Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1sefa_ | Hypothetical protein EF2996 | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.996 --> HitDALI alignment (Z-score: 8.8 Raw score:782.00) d1lrha_ 1 ------------------------------------------------------------ 1 d1sefa_ 1 kelltsravikkdnyaiiphdglvqnavpgfenvdisilgspklgatfvdyiatfhkngq 60 d1lrha_ 1 ------------------------------------------------------------ 1 d1sefa_ 61 qttgfggdgiqtlvyvidgrlrvsdgqetheleaggyayftpemkmylanaqeadtevfl 120 d1lrha_ 1 --------scvrdNSLVRDISQMPQSS-YGIEGLSHITVAGALnhGMKEVEVWLQTISPG 51 :::::::::::::: ::::::::::::::: ::::::::::::::: d1sefa_ 121 ykkryqplaghqpYKVVGSIHDQQPEEyEGMTDVLLWSLLPKE--FDFDMNMHILSFEPG 178 d1lrha_ 52 QRT-PIHRHSCEEVFTVLKGKGTLLMGssslkypgqPQEIPFFQNTTFSIPVNDPHQVWN 110 ::: ::::::::::::::::::::::: :::::::::::::::::::::::: d1sefa_ 179 ASHaYIETHVQEHGAYLISGQGMYNLD---------NEWYPVEKGDYIFMSAYVPQAAYA 229 d1lrha_ 111 SDEHEDLQVLVIISRPpakiflyddwsmphtaavlkfpfvwdedcfeaak 160 :::::::::::::::: d1sefa_ 230 VGREEPLMYVYSKDAN-----------------------------repel 250 FAST alignment (Normalized score: 7.36 Raw score:1472.00) d1lrha_ 1 SCVRDNS----------------------------------------------------- 7 d1sefa_ 1 -------KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIA 53 d1lrha_ 8 ------------------------------------------------------------ 8 d1sefa_ 54 TFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQE 113 d1lrha_ 8 ----------------------LVRDISQMPQ-SSYGIEGLSHITVAGALNHGM-----K 39 :::::::::: :::::::::::::: : d1sefa_ 114 ADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLL-------PKEFDF 166 d1lrha_ 40 EVEVWLQTISPGQRT-PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQ--PQEIPFFQNT 96 ::::::::::::::: ::::::::::::::::::::: :::::::::: d1sefa_ 167 DMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYN-----------LDNEWYPVEKGD 215 d1lrha_ 97 TFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCF 156 ::::::::::::::::::::::::::: d1sefa_ 216 YIFMSAYVPQAAYAVGREEPLMYVYSK--------------------------------- 242 d1lrha_ 157 EAAK-------- 160 d1sefa_ 243 ----DANREPEL 250 TMalign alignment (TM-score: 0.61 Raw score:98.36) d1lrha_ 1 ------------------------------------------------------------ 1 d1sefa_ 1 KELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQ 60 d1lrha_ 1 ------------------------------------------------------------ 1 d1sefa_ 61 QTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFL 120 d1lrha_ 1 -------------SCVRDNSLVRDISQMPQSSY-GIEGLSHITVAGALNHGMKEVEVWLQ 46 ::::::::::::::: :::::::::::::: :::: :::::: d1sefa_ 121 YKKRYQPLAGHQP-----YKVVGSIHDQQPEEYEGMTDVLLWSLLPKE-FDFD-MNMHIL 173 d1lrha_ 47 TISPGQRT-PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDP 105 :::::::: ::::::::::::::::::::::: ::::::::::::::::::: d1sefa_ 174 SFEPGASHAYIETHVQEHGAYLISGQGMYNLD---------NEWYPVEKGDYIFMSAYVP 224 d1lrha_ 106 HQVWNSDEHEDLQVLVIISRPPAK---IFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160 ::::::::::::::::::: :::: d1sefa_ 225 QAAYAVGREEPLMYVYSKD-ANREPEL------------------------------- 250 HHsearch alignment (Probability: 1.00 E-value:0.00) d1lrha_ 29 TVAGALNHGMKEVEVWLQTISPGQRT--PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQ 86 ::::::::: :::::::::::::::: :::::::::::::::::::::::: d1sefa_ 37 SILGSPKLG-ATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQ-------- 87 d1lrha_ 87 PQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISR 125 :::::::::::::::::::::::::: ::::::::::: d1sefa_ 88 -ETHELEAGGYAYFTPEMKMYLANAQE-ADTEVFLYKKR 124