Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1qxra_ | Glucose-6-phosphate isomerase, GPI | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.997 --> HitDALI alignment (Z-score: 10.8 Raw score:823.00) d1lrha_ 1 scvrdNSLVRD--------ISQMPQSSYGI----------------------EGLSHITv 30 :::::: ::::::::::: ::::::: d1qxra_ 1 ---myKEPFGVkvdfetgiIEGAKKSVRRLsdmegyfvderawkelvekedpVVYEVYA- 56 d1lrha_ 31 AGALnhgmKEVEVWLQTISP------GQRTPIHRH---SCEEVFTVLKGKGTLLMGSSSl 81 :::: :::::::::::: ::::::::: ::::::::::::::::::::: d1qxra_ 57 VEQE-ekeGDLNFATTVLYPgkvgkeFFFTKGHFHaklDRAEVYVALKGKGGMLLQTPE- 114 d1lrha_ 82 kypGQPQEIPFFQNTTFSIPVNDPHQVWNSDeHEDLQVLVIISrPPAKIFLY----DDWS 137 :::::::::::::::::::::::::::: ::::::::::: :::::::: :::: d1qxra_ 115 ---GDAKWISMEPGTVVYVPPYWAHRTVNIG-DEPFIFLAIYP-ADAGHDYGtiaeKGFS 169 d1lrha_ 138 mphtaavlkfpfvwdedcfeaak 160 d1qxra_ 170 -----kivieengevkvvdnprw 187 FAST alignment (Normalized score: 7.89 Raw score:1365.00) d1lrha_ 1 SCVRDNS-----LVRDI--------SQMPQSSYGI------------------------- 22 :::: ::::: d1qxra_ 1 -------MYKEPFGVK-VDFETGIIEGAKK-----SVRRLSDMEGYFVDERAWKELVEKE 47 d1lrha_ 23 --EGLSHITVAGALNHGM-------KEVEVWLQTISP-------GQRTPIHR---HSCEE 63 ::::::: ::::::::::: :::::::: ::::: d1qxra_ 48 DPVVYEVYA---------VEQEEKEGDLNFATTVLY-PGKVGKEFFFTKGHFHAKLDRAE 97 d1lrha_ 64 VFTVLKGKGTLLMGSSSLKYP-GQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVI 122 :::::::::::::::: ::::::::::::::::::::::::::: :::::::::: d1qxra_ 98 VYVALKGKGGMLLQTP-----EGDAKWISMEPGTVVYVPPYWAHRTVNI-GDEPFIFLAI 151 d1lrha_ 123 ISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK---------------------- 160 : ::::::: d1qxra_ 152 Y-PADAGHD-----------------------------YGTIAEKGFSKIVIEENGEVKV 181 d1lrha_ 161 ------ 161 d1qxra_ 182 VDNPRW 187 TMalign alignment (TM-score: 0.64 Raw score:102.55) d1lrha_ 1 ---SCVRDNSLVRD-------ISQMPQSSYG--I--------------------EGLSHI 28 :::::: :::::::::: : :::::: d1qxra_ 1 MYK-----EPFGVKVDFETGIIEGAKKSVRRLSDMEGYFVDERAWKELVEKEDPVVYEVY 55 d1lrha_ 29 TVAGALNHGMKEVEVWLQTISPG------QRTPIHRH--S-CEEVFTVLKGKGTLLMGSS 79 :: :::: ::::::::::::::: :::::::: : ::::::::::::::::::: d1qxra_ 56 AV-EQEE-KEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTP 113 d1lrha_ 80 SLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFL--Y-D-D 135 ::: :::::::::::::::::::::::::: ::::::::::: ::::::: : : : d1qxra_ 114 ---EGD-AKWISMEPGTVVYVPPYWAHRTVNIG-DEPFIFLAIYP-ADAGHDYGTIAEKG 167 d1lrha_ 136 WS------------------MPHTAAVLKFPFVWDEDCFEAAK 160 :: d1qxra_ 168 FSKIVIEENGEVKVVDNPRW----------------------- 187 HHsearch alignment (Probability: 1.00 E-value:0.00) d1lrha_ 4 RDNSLVRDISQMPQ---SSYG-------IEGLSHITVAGALNHGMKEVEVWLQTISPGQ- 52 :::::::::::::: :::: ::::::::::::::::::::::::::::::: d1qxra_ 19 GAKKSVRRLSDMEGYFVDERAWKELVEKEDPVVYEVYAVEQEEKEGDLNFATTVLYPGKV 78 d1lrha_ 53 -----RTPIHRH---SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVND 104 ::::::: :::::::::::::::::::: ::::::::::::::::::::: d1qxra_ 79 GKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTP----EGDAKWISMEPGTVVYVPPYW 134 d1lrha_ 105 PHQVWNSDEHEDLQVLVIISRPPAK 129 ::::::::: ::::::::::::::: d1qxra_ 135 AHRTVNIGD-EPFIFLAIYPADAGH 158