Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1o4ta_ | Hypothetical protein TM1287 | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.998 --> HitDALI alignment (Z-score: 13.2 Raw score:788.80) d1lrha_ 1 scvrdnsLVRDISQMPQSSYGI-----EGLSHITVAGALnHGMKEV-EVWLQTISPGQRT 54 ::::::::::::::: :::::::::::: :::::: ::::::::::::: d1o4ta_ 1 -------MVVRSSEITPERISNmrggkGEVEMAHLLSKE-AMHNKArLFARMKLPPGSSV 52 d1lrha_ 55 PIHRHS-CEEVFTVLKGKGTLLMGssslkypgqPQEIPFFQNTTFSIPVNDPHQVWNSDE 113 :::::: ::::::::::::::::: ::::::::::::::::::::::::::: d1o4ta_ 53 GLHKHEgEFEIYYILLGEGVFHDN---------GKDVPIKAGDVCFTDSGESHSIENTGN 103 d1lrha_ 114 hEDLQVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 ::::::::::: d1o4ta_ 104 -TDLEFLAVIIL----------------------------------l 115 FAST alignment (Normalized score: 11.18 Raw score:1516.00) d1lrha_ 1 SCVRDNSLVRDISQMPQSSYG------IEGLSHITVAGALNHGMKE-VEVWLQTISPGQR 53 ::::::::::::: ::::::::::::::: ::: ::::::::::::: d1o4ta_ 1 -------MVVRSSEITPERI-SNMRGGKGEVEMAHLLSKEAM-HNKARLFARMKLPPGSS 51 d1lrha_ 54 TPIHR-HSCEEVFTVLKGKGTLLMGSSSLKYPGQ--PQEIPFFQNTTFSIPVNDPHQVWN 110 ::::: ::::::::::::::::: :::::::::::::::::::::::: d1o4ta_ 52 VGLHKHEGEFEIYYILLGEGVFH-----------DNGKDVPIKAGDVCFTDSGESHSIEN 100 d1lrha_ 111 SDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK--- 160 : ::::::::::: d1o4ta_ 101 T-GNTDLEFLAVI-------------------------------------ILL 115 TMalign alignment (TM-score: 0.61 Raw score:96.82) d1lrha_ 1 SCVRDNSLVRDISQMPQSSYGI-----EGLSHITVAGALNHGM-KEV-EVWLQTISPGQR 53 ::::::::::::::: ::::::::::: ::: ::: :::::::::::: d1o4ta_ 1 -------MVVRSSEITPERISNMRGGKGEVEMAHLLSK--EAMHNKARLFARMKLPPGSS 51 d1lrha_ 54 TPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSD 112 ::::::: ::::::::::::::::: :::::::::::::::::::::::::: d1o4ta_ 52 VGLHKHEGEFEIYYILLGEGVFHDN---------GKDVPIKAGDVCFTDSGESHSIENTG 102 d1lrha_ 113 EHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160 ::::::::::::: d1o4ta_ 103 -NTDLEFLAVIILL---------------------------------- 115 HHsearch alignment (Probability: 1.00 E-value:0.00) d1lrha_ 8 LVRDISQMPQSS-----YGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSC- 61 :::::::::::: :::::::::::::::::::::::::::::::::::::::::: d1o4ta_ 1 MVVRSSEITPERISNMRGGKGEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGE 60 d1lrha_ 62 EEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121 ::::::::::::::::: :::::::::::::::::::::::::: ::::::: d1o4ta_ 61 FEIYYILLGEGVFHDNG---------KDVPIKAGDVCFTDSGESHSIENTGN-TDLEFLA 110 d1lrha_ 122 II 123 :: d1o4ta_ 111 VI 112