Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1vj2a_ | Hypothetical protein TM1459 | RmlC-like cupins | Double-stranded beta-helix | All β |
Query <-- 0.971 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.998 --> HitDALI alignment (Z-score: 13.8 Raw score:817.90) d1lrha_ 1 scvrdnSLVRDISQMPQSSYGI---EGLSHITVAGALnhGMKEVEVWLQTISPGQRTPIH 57 :::::::::::::::: :::::::::::: ::::::::::::::::::::: d1vj2a_ 1 ------MILKRAYDVTPQKISTdkvRGVRKRVLIGLK--DAPNFVMRLFTVEPGGLIDRH 52 d1lrha_ 58 RHSCEEVFTVLKGKGTLLMGssslkypgqPQEIPFFQNTTFSIPVNDPHQVWNSDEhEDL 117 :::::::::::::::::::: ::::::::::::::::::::::::::: ::: d1vj2a_ 53 SHPWEHEIFVLKGKLTVLKE---------QGEETVEEGFYIFVEPNEIHGFRNDTD-SEV 102 d1lrha_ 118 QVLVIISrPPAKiflyddwsmphtaavlkfpfvwdedcfeaak 160 ::::::: :::: d1vj2a_ 103 EFLCLIP-KEGG------------------------------e 114 FAST alignment (Normalized score: 12.00 Raw score:1621.00) d1lrha_ 1 SCVRDNSLVRDISQMPQSSYG-----IEGLSHITVAGALNHGMKEVEVWLQTISPGQRTP 55 ::::::::::::: ::::::::::::: ::::::::::::::::::: d1vj2a_ 1 ------MILKRAYDVTPQK--ISTDKVRGVRKRVLIGLK--DAPNFVMRLFTVEPGGLID 50 d1lrha_ 56 IHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQ--PQEIPFFQNTTFSIPVNDPHQVWNSDE 113 :::::::::::::::::::: ::::::::::::::::::::::::: : d1vj2a_ 51 RHSHPWEHEIFVLKGKLTVL-----------KEQGEETVEEGFYIFVEPNEIHGFRND-T 98 d1lrha_ 114 HEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------ 160 :::::::::: d1vj2a_ 99 DSEVEFLCLI-------------------------------------PKEGGE 114 TMalign alignment (TM-score: 0.62 Raw score:99.10) d1lrha_ 1 SCVRDNSLVRD-ISQMPQSSYGI---EGLSHITVAGALNHGMKEVEVWLQTISPGQRTPI 56 :::: ::::::::::: ::::::::::: ::::::::::::::::::::: d1vj2a_ 1 -------MILKRAYDVTPQKISTDKVRGVRKRVLIGL--KDAPNFVMRLFTVEPGGLIDR 51 d1lrha_ 57 HRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHED 116 ::::::::::::::::::::: :::::::::::::::::::::::::: ::: d1vj2a_ 52 HSHPWEHEIFVLKGKLTVLKE---------QGEETVEEGFYIFVEPNEIHGFRNDT-DSE 101 d1lrha_ 117 LQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK 160 :::::::::::: : d1vj2a_ 102 VEFLCLIPKEGG-----------------------E-------- 114 HHsearch alignment (Probability: 1.00 E-value:0.00) d1lrha_ 8 LVRDISQMPQSS---YGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEV 64 :::::::::::: ::::::::::::::: :::::::::::::::::::::::::::: d1vj2a_ 2 ILKRAYDVTPQKISTDKVRGVRKRVLIGLK--DAPNFVMRLFTVEPGGLIDRHSHPWEHE 59 d1lrha_ 65 FTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIIS 124 :::::::::::::: :::::::::::::::::::::::::: :::::::::: d1vj2a_ 60 IFVLKGKLTVLKEQ---------GEETVEEGFYIFVEPNEIHGFRNDTD-SEVEFLCLIP 109 d1lrha_ 125 RPPA 128 :::: d1vj2a_ 110 KEGG 113