Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j1la_ | Pirin | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1sfpa_ | Acidic seminal fluid protein (ASFP) | Spermadhesin, CUB domain | CUB-like | All β |
Query <-- 1.062 --> IntermediateDALI alignment (Z-score: 9.2 Raw score:663.80) query 1 meinadfTKPVVIDtdqLEWRPSpMKGVERRMLDR----IGGEVARATSIVRYAPGSRFS 56 ::::::: :::::: ::::::::::: ::::::::::::::::::::: d1j1la_ 1 ----sskKVTLSVL---SREQSE-GVGARVRRSIGrpelKNLDPFLLFDEFKGGRPGGFP 52 query 57 AHTHD-GGEEFIVL-DGVFQDE-----HGDYPAGTYVRNPP--TTSHVPGSAE--GCTIF 105 ::::: :::::::: ::::::: :::::::::::::: :::::::::: ::::: d1j1la_ 53 DHPHRgFETVSYLLeGGSMAHEdfcghTGKMNPGDLQWMTAgrGILHAEMPCSeePAHGL 112 query 106 VKLWQF---DPAD-RTQFSKNM-------------------------------------- 123 :::::: :::: :::::::: d1j1la_ 113 QLWVNLrssEKMVePQYQELKSeeipkpskdgvtvavisgealgikskvytrtptlyldf 172 query 124 ------------------------------------------------------------ 124 d1j1la_ 173 kldpgakhsqpipkgwtsfiytisgdvyigpddaqqkiephhtavlgegdsvqvenkdpk 232 query 124 -------------------------------------------------------- 124 d1j1la_ 233 rshfvliageplrepviqhgpfvmntneeisqaildfrnakngferaktwkskign 288 FAST alignment (Normalized score: 5.54 Raw score:1043.00) query 1 MEINADFTK-----PVVIDTDQLEWRPSPMKGVERRMLDRIGGEV-----------ARAT 44 ::::: ::::: :::::::::: :::: d1j1la_ 1 ---------SSKKVTLSVL---SREQS-EGVGARVRRS-------IGRPELKNLDPFLLF 40 query 45 SIVRYAPGS--RFSAHTHD-GGEEFIVL-DGVFQDE-------HGDYPAGTYVRNPP--- 90 ::::::: :::::::: :::::::: ::::: :::::::::::: d1j1la_ 41 DEFKGGR--PGGFPDHPHRGFETVSYLLEGGSMA--HEDFCGHTGKMNPGDLQWM--TAG 94 query 91 -TTSHVPGS--AEGCTIFVKLWQF-------DPAD-RTQFSKNM---------------- 123 :::::::: ::::::::: :::: :::::: d1j1la_ 95 RGILHAEMPCSEEPAHGLQL----WVNLRSSEKMVEPQYQEL--KSEEIPKPSKDGVTVA 148 query 124 ------------------------------------------------------------ 124 d1j1la_ 149 VISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQ 208 query 124 ------------------------------------------------------------ 124 d1j1la_ 209 KIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILD 268 query 124 -------------------- 124 d1j1la_ 269 FRNAKNGFERAKTWKSKIGN 288 TMalign alignment (TM-score: 0.59 Raw score:72.48) query 1 ---------------------------------------------------------MEI 3 d1j1la_ 1 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHR--- 57 query 4 NADFTKPVVIDTD-----------------QL---------------------------- 18 :::::::::: :: d1j1la_ 58 ---GFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQL 114 query 19 -------------------E---WRPSPMKGVERRMLDR---------IG--GEVARATS 45 : :::: ::::::::::: :: ::::: d1j1la_ 115 WVNLRSSEKMVEPQYQELKSEEIPKPS-KDGVTVAVISGEALGIKSKVYTRT---PTLYL 170 query 46 IVRYAPGSRFSAHTH-D-GGEEFIVLDGVFQD----EHGDYPAGTYVRNPPTTSHVPGSA 99 :::::::::: :::: : :::::::::::::: :::::::::::::::::::::::: d1j1la_ 171 DFKLDPGAKH-SQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENK 229 query 100 E--GCTIFVKLWQFDPA------------------------------------------- 114 : :::::::: ::::: d1j1la_ 230 DPKRSHFVLIA-GEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN 288 query 115 DRTQFSKNM 123 d1j1la_ 289 --------- 289 HHsearch alignment (Probability: 0.84 E-value:0.00) query 28 VERRMLDRIGGEVARATSIVRYAPGSR--FSAHTHDGGEEF-IVLD-GVF-----QDEHG 78 ::::::::::::::::::::::::::: :::::::::::: :::: ::: ::::: d1j1la_ 22 VRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTG 81 query 79 DYPAGTYVRNPPTT 92 :::::::::::::: d1j1la_ 82 KMNPGDLQWMTAGR 95
Intermediate <-- 0.598 --> HitDALI alignment (Z-score: 5.2 Raw score:328.30) d1j1la_ 1 sskkvtlsvlsreqsegvgarvrrsigrpelknldpfllfdefkggrpggfpdhphrgfe 60 d1sfpa_ 1 ------------------------------------------------------------ 1 d1j1la_ 61 tvsylleggsmahedfcghtgkmnpgdlqwmtagrgilhaempcseepahglqlwvnlrs 120 d1sfpa_ 1 ------------------------------------------------------------ 1 d1j1la_ 121 sekmvepqyqelkseeipkpsKDGVtvavisgealgikskvytrtpTLYLDFKLD----p 176 :::: ::::::::: d1sfpa_ 1 -----------------lprnTNCG-----------------gilkEESGVIATYygpkt 26 d1j1la_ 177 GAKHSQPIPKGWTSFIYTISG-------DVYIG---PDDAQ-QKIE--pHHTAVLGeGDS 223 ::::::::::::::::::::: ::::: ::::: :::: ::::::: ::: d1sfpa_ 27 NCVWTIQMPPEYHVRVSIQYLqlncnkeSLEIIdglPGSPVlGKICegsLMDYRSS-GSI 85 d1j1la_ 224 VQVENKD-----PKRSHFVLIAgeplrepviqhgpfvmntneeisqaildfrnakngfer 278 ::::::: :::::::::: d1sfpa_ 86 MTVKYIRepehpASFYEVLYFQ-------------------------------------- 107 d1j1la_ 279 aktwkskign 288 d1sfpa_ 108 ------dpqa 111 FAST alignment (Normalized score: 3.13 Raw score:559.20) d1j1la_ 1 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFE 60 d1sfpa_ 1 ------------------------------------------------------------ 1 d1j1la_ 61 TVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRS 120 d1sfpa_ 1 ------------------------------------------------------------ 1 d1j1la_ 121 SEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPT--------LYLDF 172 ::::: ::::: d1sfpa_ 1 ----------------LPRNT--------------------------NCGGILKEESGVI 18 d1j1la_ 173 KL-----DPGAKHSQPIPKGWTSFIYTIS--------GDVY--IGPDDAQQKI------- 210 : ::::::::::::::::::::: :::: ::::: d1sfpa_ 19 A-TYYGPKTNCVWTIQMPPEYHVRVSIQ-YLQLNCNKESLEIIDGLPG-----SPVLGKI 71 d1j1la_ 211 --EPHHTAVLGEGDSVQVENKD------PKRSHFVLIAGEPLREPVIQHGPFVMNTNEEI 262 ::::::::: ::::::::: ::::::::::: d1sfpa_ 72 CEGSLMDYRSS-GSIMTVKYI-REPEHPASFYEVLYFQD--------------------- 108 d1j1la_ 263 SQAILDFRNAKNGFERAKTWKSKIGN--- 288 d1sfpa_ 109 --------------------------PQA 111 TMalign alignment (TM-score: 0.25 Raw score:71.28) d1j1la_ 1 --SSKKVTLSVLSREQSEGVG---ARVRRSIG-RPELKNLDPFLLFDEFKG---GRPGGF 51 ::::::: : :: ::::: :::::: d1sfpa_ 1 LP------------RNTNCGGILK-------EE----------SG-VIATYYGPKTNCVW 30 d1j1la_ 52 PDHPH---RGFETVS-YLLEG---GSMAHEDF---CGHTGKMNPGDLQWMTAGRGILHAE 101 :::: ::::::: ::::: :::::::: ::::::::::::::::: ::::::: d1sfpa_ 31 -TIQMPPEYHVRVSIQYLQLNCNKESLEIIDGLPGSPVLGKICEGSLMDYRS-SGSIMTV 88 d1j1la_ 102 MPCSE--E-PAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIK 158 ::::: : ::::::::::: : d1sfpa_ 89 KYIREPEHPASFYEVLYFQD----P----------------------------------- 109 d1j1la_ 159 SKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVL 218 d1sfpa_ 110 ------------------------------------------------------------ 110 d1j1la_ 219 GEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFER 278 :: d1sfpa_ 110 ------------------------------------QA---------------------- 111 d1j1la_ 279 AKTWKSKIGN 288 d1sfpa_ 112 ---------- 112 HHsearch alignment (Probability: 0.03 E-value:0.25) d1j1la_ 152 GEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGW----TSFIYTISGD 198 ::::::::::::::: ::::::::::::::::::::: :::::::::: d1sfpa_ 13 EESGVIATYYGPKTN-CVWTIQMPPEYHVRVSIQYLQLNCNKESLEIIDGL 62