Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j1la_ | Pirin | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1nzia1 | Complement C1S component | Spermadhesin, CUB domain | CUB-like | All β |
Query <-- 1.062 --> IntermediateDALI alignment (Z-score: 9.2 Raw score:663.80) query 1 meinadfTKPVVIDtdqLEWRPSpMKGVERRMLDR----IGGEVARATSIVRYAPGSRFS 56 ::::::: :::::: ::::::::::: ::::::::::::::::::::: d1j1la_ 1 ----sskKVTLSVL---SREQSE-GVGARVRRSIGrpelKNLDPFLLFDEFKGGRPGGFP 52 query 57 AHTHD-GGEEFIVL-DGVFQDE-----HGDYPAGTYVRNPP--TTSHVPGSAE--GCTIF 105 ::::: :::::::: ::::::: :::::::::::::: :::::::::: ::::: d1j1la_ 53 DHPHRgFETVSYLLeGGSMAHEdfcghTGKMNPGDLQWMTAgrGILHAEMPCSeePAHGL 112 query 106 VKLWQF---DPAD-RTQFSKNM-------------------------------------- 123 :::::: :::: :::::::: d1j1la_ 113 QLWVNLrssEKMVePQYQELKSeeipkpskdgvtvavisgealgikskvytrtptlyldf 172 query 124 ------------------------------------------------------------ 124 d1j1la_ 173 kldpgakhsqpipkgwtsfiytisgdvyigpddaqqkiephhtavlgegdsvqvenkdpk 232 query 124 -------------------------------------------------------- 124 d1j1la_ 233 rshfvliageplrepviqhgpfvmntneeisqaildfrnakngferaktwkskign 288 FAST alignment (Normalized score: 5.54 Raw score:1043.00) query 1 MEINADFTK-----PVVIDTDQLEWRPSPMKGVERRMLDRIGGEV-----------ARAT 44 ::::: ::::: :::::::::: :::: d1j1la_ 1 ---------SSKKVTLSVL---SREQS-EGVGARVRRS-------IGRPELKNLDPFLLF 40 query 45 SIVRYAPGS--RFSAHTHD-GGEEFIVL-DGVFQDE-------HGDYPAGTYVRNPP--- 90 ::::::: :::::::: :::::::: ::::: :::::::::::: d1j1la_ 41 DEFKGGR--PGGFPDHPHRGFETVSYLLEGGSMA--HEDFCGHTGKMNPGDLQWM--TAG 94 query 91 -TTSHVPGS--AEGCTIFVKLWQF-------DPAD-RTQFSKNM---------------- 123 :::::::: ::::::::: :::: :::::: d1j1la_ 95 RGILHAEMPCSEEPAHGLQL----WVNLRSSEKMVEPQYQEL--KSEEIPKPSKDGVTVA 148 query 124 ------------------------------------------------------------ 124 d1j1la_ 149 VISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQ 208 query 124 ------------------------------------------------------------ 124 d1j1la_ 209 KIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILD 268 query 124 -------------------- 124 d1j1la_ 269 FRNAKNGFERAKTWKSKIGN 288 TMalign alignment (TM-score: 0.59 Raw score:72.48) query 1 ---------------------------------------------------------MEI 3 d1j1la_ 1 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHR--- 57 query 4 NADFTKPVVIDTD-----------------QL---------------------------- 18 :::::::::: :: d1j1la_ 58 ---GFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQL 114 query 19 -------------------E---WRPSPMKGVERRMLDR---------IG--GEVARATS 45 : :::: ::::::::::: :: ::::: d1j1la_ 115 WVNLRSSEKMVEPQYQELKSEEIPKPS-KDGVTVAVISGEALGIKSKVYTRT---PTLYL 170 query 46 IVRYAPGSRFSAHTH-D-GGEEFIVLDGVFQD----EHGDYPAGTYVRNPPTTSHVPGSA 99 :::::::::: :::: : :::::::::::::: :::::::::::::::::::::::: d1j1la_ 171 DFKLDPGAKH-SQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENK 229 query 100 E--GCTIFVKLWQFDPA------------------------------------------- 114 : :::::::: ::::: d1j1la_ 230 DPKRSHFVLIA-GEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN 288 query 115 DRTQFSKNM 123 d1j1la_ 289 --------- 289 HHsearch alignment (Probability: 0.84 E-value:0.00) query 28 VERRMLDRIGGEVARATSIVRYAPGSR--FSAHTHDGGEEF-IVLD-GVF-----QDEHG 78 ::::::::::::::::::::::::::: :::::::::::: :::: ::: ::::: d1j1la_ 22 VRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTG 81 query 79 DYPAGTYVRNPPTT 92 :::::::::::::: d1j1la_ 82 KMNPGDLQWMTAGR 95
Intermediate <-- 1.034 --> HitDALI alignment (Z-score: 4.9 Raw score:326.10) d1j1la_ 1 sskkvtlsvlsreqsegvgarvrrsigrpelknldpfllfdefkggrpggfpdhphrgfe 60 d1nzia1 1 ------------------------------------------------------------ 1 d1j1la_ 61 tvsylleggsmahedfcghtgkmnpgdlqwmtagrgilhaempcseepahglqlwvnlrs 120 d1nzia1 1 ------------------------------------------------------------ 1 d1j1la_ 121 sekmvepqyqelkseeipkpskdgvtvavisgealgikskvytrtptLYLDFKLD----- 175 :::::::: d1nzia1 1 --------------------------------------------eptMYGEILSPnypqa 16 d1j1la_ 176 ----pGAKHSQPIPKGWTSFIYTISG-----------dVYIGPddAQQKIE--------- 211 ::::::::::::::::::::: ::::: :::::: d1nzia1 17 ypsevEKSWDIEVPEGYGIHLYFTHLdielsencaydsVQIIS--EEGRLCgqrssnnph 74 d1j1la_ 212 --pHHTAVLGeGDSVQVENKD-------PKRSHFVLIAGEPlrepviqhgpfvmntneei 262 ::::::: :::::::::: ::::::::::::: d1nzia1 75 spiVEEFQVP-YNKLQVIFKSdfsneerFTGFAAYYVATDI------------------- 114 d1j1la_ 263 sqaildfrnakngferaktwkskign 288 d1nzia1 115 -------------------------- 115 FAST alignment (Normalized score: 2.79 Raw score:506.20) d1j1la_ 1 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFE 60 d1nzia1 1 ------------------------------------------------------------ 1 d1j1la_ 61 TVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRS 120 d1nzia1 1 ------------------------------------------------------------ 1 d1j1la_ 121 SEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPT---LYLDFKLD-- 175 :::::: d1nzia1 1 -----------------------------------------------EPTMYGEIL--SP 11 d1j1la_ 176 ---------PGAKHSQPIPKGWTSFIYTIS------------GDVYIGPDDA---QQKIE 211 :::::::::::::::::::: ::::: :::: d1nzia1 12 NYPQAYPSEVEKSWDIEVPEGYGIHLYFT-HLDIELSENCAYDSVQI-----ISEEGRL- 64 d1j1la_ 212 P-------------HHTAVLGEGDSVQVENKDP---------KRSHFVLIAGEPLREPVI 249 ::::: ::::::::::: :::::::::: d1nzia1 65 -CGQRSSNNPHSPIVEEFQ-VPYNKLQVIFK--SDFSNEERFTGFAAYYVAT-------- 112 d1j1la_ 250 QHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN-- 288 d1nzia1 113 ---------------------------------------DI 114 TMalign alignment (TM-score: 0.24 Raw score:67.75) d1j1la_ 1 SSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFE 60 d1nzia1 1 ------------------------------------------------------------ 1 d1j1la_ 61 TVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRS 120 d1nzia1 1 ------------------------------------------------------------ 1 d1j1la_ 121 SEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDF--K---LD 175 :: : ::::::: : :: d1nzia1 1 -------------------------------EP---------T--MYGEILSPNYPQAYP 18 d1j1la_ 176 PGAKHSQPIPK----GWTSFIYTISGD-------VYIGP--DD-AQQKIEPHH------- 214 ::::::::::: :::::::::::: ::::: : ::::::::: d1nzia1 19 SEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIIS-EEGRLCGQRSSNNPHSPI 77 d1j1la_ 215 TAVLGE---GDSVQVENK--DP-KRSHFVLIAGEPLREPVIQHGPFVMNTNEEISQAILD 268 :::::: ::::::::: :: :::::::::::::: d1nzia1 78 VEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDI----------------------- 114 d1j1la_ 269 FRNAKNGFERAKTWKSKIGN 288 d1nzia1 115 -------------------- 115 HHsearch alignment (Probability: 0.05 E-value:0.20) d1j1la_ 168 LYLDFKLDPGAKHSQPIPKGW--------TSFIYTISGDVYIGPDDAQQKIEP-HHTAVL 218 ::::::::::::::::::::: :::::::::::::::::::::::: :::::: d1nzia1 23 KSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISEEGRLCGQRSSNNPHSPIVEEFQ 82 d1j1la_ 219 GEGDSVQVENKDP 231 ::::::::::::: d1nzia1 83 VPYNKLQVIFKSD 95