Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1juha_ | Quercetin 2,3-dioxygenase | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1odma_ | Isopenicillin N synthase | Clavaminate synthase-like | Double-stranded beta-helix | All β |
Query <-- 1.119 --> IntermediateDALI alignment (Z-score: 9.2 Raw score:671.30) query 1 ------------------------------------------------------------ 1 d1juha_ 1 sslivedapdhvrpyvirhysharavtvdtqlyrfyvtgpssgyaftlmgtnaphsdalg 60 query 1 ------------------------------------------------------------ 1 d1juha_ 61 vlphihqkhyenfycnkgsfqlwaqsgnetqqtrvlssgdygsvprnvthtfqiqdpdte 120 query 1 ------------------------------------------------------------ 1 d1juha_ 121 mtgvivpggfedlfyylgtnatdtthtpyipsistlqsfdvyaelsftprtdtvngtapa 180 query 1 --------meINADFTKPVVIDTDQLEWRPSP-MKGVERRMLDRI--GGEVARATSIVRY 49 :::::::::::::::::::::: :::::::::::: ::::::::::::: d1juha_ 181 ntvwhtganaLASTAGDPYFIANGWGPKYLNSqYGYQIVAPFVTAtqAQDTNYTLSTISM 240 query 50 APG---srFSAHTHDGGEEFIVLDGVFQDE-----HGDYPAGTYVRNPPTTSHVPGSAE- 100 ::: :::::::::::::::::::::: :::::::::::::::::::::::: d1juha_ 241 STTpstvtVPTWSFPGACAFQVQEGRVVVQigdyaATELGSGDVAFIPGGVEFKYYSEAy 300 query 101 GCTIFVKLWQ-----------fdpadrtqfsknm 123 :::::::::: d1juha_ 301 FSKVLFVSSGsdgldqnlvnggeewssvsfpadw 334 FAST alignment (Normalized score: 5.64 Raw score:1144.00) query 1 ME---------------------------------------------------------- 2 d1juha_ 1 --SSLIVEDAPDHVRPYVIRHYSHARAVTVDTQLYRFYVTGPSSGYAFTLMGTNAPHSDA 58 query 3 ------------------------------------------------------------ 3 d1juha_ 59 LGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPD 118 query 3 ------------------------------------------------------------ 3 d1juha_ 119 TEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSISTLQSFDVYAELSFTPRTDTVNGTA 178 query 3 ------------INADFTKPVVIDTDQLEWRP-SPMKGVERRMLDRIGGEVA-------- 41 :::::::::::::::::::: :::::::::::: d1juha_ 179 PANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFV-------TATQAQDT 231 query 42 -RATSIVRYAPGSR-------FSAHTHDGGEEFIVLDGVFQDE------HGDYPAGTYVR 87 ::::::::: ::::::::::::::::::::: ::::::::::: d1juha_ 232 NYTLSTISMS----TTPSTVTVPTWSFPGACAFQVQEGRVVV-QIGDYAATELGSGDVAF 286 query 88 NPPTTSHVPGS-AEGCTIFVKLWQFDPADRTQFSKNM----------------------- 123 ::::::::::: :::::::::: d1juha_ 287 IPGGVEFKYYSEAYFSKVLFVS---------------SGSDGLDQNLVNGGEEWSSVSFP 331 query 124 --- 124 d1juha_ 332 ADW 334 TMalign alignment (TM-score: 0.74 Raw score:90.61) query 1 ------MEINADFTKPVVIDTDQLEW-RPSPMKGVERRMLDRIG---GEVA-RATSIVRY 49 :::::: :::::::: ::: ::: ::::::::::::: : :::::::: d1juha_ 1 SSLIVE-DAPDHV-RPYVIRHY-SHARAVT-VDTQLYRFYVTGPSSG---YAFTLMGTNA 53 query 50 APGSRF--SAHTHD-GGEEFIVLDGVFQDE---------HGDYPAGTYVRNPPTTSHVPG 97 :::::: :::::: ::::::::::::::: ::::::::::::::::::::: d1juha_ 54 PHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQ 113 query 98 SAEG-CTIFVKLWQF--------------------------------------------- 111 :::: :::::::::: d1juha_ 114 IQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSISTLQSFDVYAELSFTPRTDT 173 query 112 ---------------------DPADRTQFSK-NM-------------------------- 123 ::::::: :: d1juha_ 174 VNGTAPANTVWHTGANALAST---AGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQD 230 query 124 ------------------------------------------------------------ 124 d1juha_ 231 TNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGG 290 query 124 -------------------------------------------- 124 d1juha_ 291 VEFKYYSEAYFSKVLFVSSGSDGLDQNLVNGGEEWSSVSFPADW 334 HHsearch alignment (Probability: 0.96 E-value:0.00) query 6 DFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSRFS--AHTHDGG 63 ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: d1juha_ 10 DHVRPYVIRHYSHARAVTVDTQLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKH 69 query 64 -EEFIVLDGVFQDEHGD---------YPAGTYVRNPPTTSHV 95 :::::::::::::::: :::::::::::::::: d1juha_ 70 YENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHT 111
Intermediate <-- 0.743 --> HitDALI alignment (Z-score: 5.4 Raw score:676.50) d1juha_ 1 ----sSLIVED-----------------APDHVR---PYVIRHYsharavtvdtqlyrfy 36 :::::: :::::: ::::::: d1odma_ 1 svskaNVPKIDvsplfgddqaakmrvaqQIDAASrdtGFFYAVN---------------- 44 d1juha_ 37 vtgpssgyaftlMGTNaphsdalgvlphihqkhyenfYCNKgsfqlwaqsgnetqqtrvl 96 :::: :::: d1odma_ 45 ------------HGIN--------------------vQRLS------------------- 53 d1juha_ 97 SSGDygsvprnvthtfqiqdpdtemtgvivpggfedlfyylgtnatdtthtpyipsistl 156 :::: d1odma_ 54 QKTK-------------------------------------------------------- 57 d1juha_ 157 qsfdvyaelsftprtdtvngtapantvwhtganalastagdpyfiANGW----------- 205 :::: d1odma_ 58 ---------------------------------------------EFHMsitpeekwdla 72 d1juha_ 206 -------------gPKYLNSQ-yGYQIVAPfVTATQ------------------------ 227 ::::::: ::::::: ::::: d1odma_ 73 iraynkehqdqvraGYYLSIPgkKAVESFC-YLNPNftpdhpriqaktpthevnvwpdet 131 d1juha_ 228 -------------------------------------------aQDTNYTLSTISMS--- 241 ::::::::::::: d1odma_ 132 khpgfqdfaeqyywdvfglssallkgyalalgkeenffarhfkpDDTLASVVLIRYPyld 191 d1juha_ 242 -ttPSTVT---------VPTWSFPG-ACAFQVqEGRVVVQIGD---YAATELGSGDVAFI 287 ::::: :::::::: :::::: :::::::::: :::::::::::::: d1odma_ 192 pypEAAIKtaadgtklsFEWHEDVSlITVLYQ-SNVQNLQVETaagYQDIEADDTGYLIN 250 d1juha_ 288 PGG------------VEFKYYSEAYFSKVLFVSSGS--------------------dgld 315 ::: ::::::::::::::::::::: d1odma_ 251 CGSymahltnnyykaPIHRVKWVNAERQSLPFFVNLgydsvidpfdprepngksdrepls 310 d1juha_ 316 qnlvnggeewssvsfpadw 334 d1odma_ 311 ygdylqnglvslinkngqt 329 FAST alignment (Normalized score: 2.20 Raw score:730.00) d1juha_ 1 SSLIVEDAPDHVRPYVIRHYSHA------------------------------------- 23 d1odma_ 1 -----------------------SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDT 37 d1juha_ 24 -------------------------------------------------RAVTV----DT 30 ::::: :: d1odma_ 38 GFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKA 97 d1juha_ 31 QLYRFYVTGPSS------------------------------------------------ 42 ::::: d1odma_ 98 VESFC-------YLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGL 150 d1juha_ 43 --------------------------GYAFTLMGTNAPHSD-----------------AL 59 :::::::::::: :: d1odma_ 151 SSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYP---YLDPYPEAAIKTAADGTKL 207 d1juha_ 60 GVLPHIHQK--HYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPR----------- 106 ::::::: ::::::::::: :::::: :::::::::::::::::: d1odma_ 208 SFEWHED--VSLITVLYQSNVQ-NLQVET-AAGYQDIEADDTGYLINC-GSYMAHLTNNY 262 d1juha_ 107 --NVTHTFQIQDPDTEMTGVIVPG---------------------------------GFE 131 ::::::::::::::::::: ::: d1odma_ 263 YKAPIHRVKWVNAERQSLPFF---VNLGYDSVIDPFDPREPNGKSDREPLSYGDYLQNGL 319 d1juha_ 132 DLFYYLGTNATDTTHTPYIPSISTLQSFDVYAELSFTPRTDTVNGTAPANTVWHTGANAL 191 : d1odma_ 320 V----------------------------------------------------------- 320 d1juha_ 192 ASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPT 251 d1odma_ 321 ------------------------------------------------------------ 321 d1juha_ 252 WSFPGACAFQVQEGRVVVQIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGS 311 d1odma_ 321 ------------------------------------------------------------ 321 d1juha_ 312 DGLDQNLVNGGEEWSSVSFPADW--------- 334 d1odma_ 321 -----------------------SLINKNGQT 329 TMalign alignment (TM-score: 0.36 Raw score:121.82) d1juha_ 1 ----SSLIVEDA-------------PD--HV--R---PYVIRHYSHARAVTVDTQLYRFY 36 :::::::: :: :: : ::::: : :: d1odma_ 1 SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYA----V----------NH- 45 d1juha_ 37 VTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVL 96 ::::: :::: d1odma_ 46 ------------GINVQ--------------------RLSQ------------------- 54 d1juha_ 97 SSGDY--GSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSIS 154 ::::: d1odma_ 55 KTKEFHM----------------------------------------------------- 61 d1juha_ 155 TLQSFDVYAELSFTPRTDTVNGTAPANTVWHT-GAN-AL--------------ASTAGDP 198 ::: ::: :: d1odma_ 62 -----------------------------SITPEEKWDLAIRAYNKEHQDQVR------- 85 d1juha_ 199 YFIANGWGPKYLNS-QYGYQIVAPFVT----------------ATQ-------------- 227 ::::::: :::::::::::: ::: d1odma_ 86 -------AGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQD 138 d1juha_ 228 ------------------------------------AQDTNYTLSTISMS----TTP--S 245 :::::::::::::: ::: : d1odma_ 139 FAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAI 198 d1juha_ 246 TVT-----V--PTWSFPG-ACAFQVQEGRVVVQIGD---YAATELGSGDVAFIPG----- 289 ::: : ::::::: ::::::: ::::::::: :::::::::::::::: d1odma_ 199 KTAADGTKLSFEWHEDVSLITVLYQS-NVQNLQVETAAGYQDIEADDTGYLINCGSYMAH 257 d1juha_ 290 -------GVEFKYYSEAYFSKVLFVSSG-----------------------------SD- 312 ::::::::::::::::::::: :: d1odma_ 258 LTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDREPLSYGDYLQN 317 d1juha_ 313 GLDQNLV-NGGEEWSSVSFPADW 334 ::::::: :::: d1odma_ 318 GLVSLINKNGQT----------- 329 HHsearch alignment (Probability: 0.09 E-value:0.03) d1juha_ 40 PSSGYAFTLMGTNAP 54 ::::::::::::::: d1odma_ 34 SRDTGFFYAVNHGIN 48