Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1lrha_ | Auxin binding protein | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1dcsa_ | Deacetoxycephalosporin C synthase | Clavaminate synthase-like | Double-stranded beta-helix | All β |
Query <-- 1.316 --> IntermediateDALI alignment (Z-score: 9.7 Raw score:629.00) query 1 meinadftKPVVIDTDQLEWRPSPMKGVERRMLDRIG--gevARATSIVRYAPGSRFSAH 58 ::::::::::::::::::::::::::::: :::::::::::::::::: d1lrha_ 1 ---scvrdNSLVRDISQMPQSSYGIEGLSHITVAGALnhgmkEVEVWLQTISPGQRTPIH 57 query 59 THDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE---GC 102 :::::::::::::::::: :::::::::::::::::::::::: :: d1lrha_ 58 RHSCEEVFTVLKGKGTLLmgssslkypgqpqEIPFFQNTTFSIPVNDPHQVWNSDeheDL 117 query 103 TIFVKLWQ----------------------fdpadrtqfsknm 123 :::::::: d1lrha_ 118 QVLVIISRppakiflyddwsmphtaavlkfpfvwdedcfeaak 160 FAST alignment (Normalized score: 7.67 Raw score:1076.00) query 1 MEINADFTKP-------VVIDTDQLEWRPSPMKGVERRMLDRIGGEVA--------RATS 45 ::::::::::::::::::::::::: :::: d1lrha_ 1 ----------SCVRDNSLVRDISQMPQSSYGIEGLSHITVAG------ALNHGMKEVEVW 44 query 46 IVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE--------------HGDYPAGTYVRNPPT 91 :::::::::::::::::::::::::::::: ::::::::::::::: d1lrha_ 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTL-LMGSSSLKYPGQPQEIPFFQNTTFSIPVN 103 query 92 TSHVPGSA----EGCTIFVKLWQFDPADRTQFSKNM------------------------ 123 ::::::: :::::::: d1lrha_ 104 DPHQVWN-SDEHEDLQVLVI----------------ISRPPAKIFLYDDWSMPHTAAVLK 146 query 124 -------------- 124 d1lrha_ 147 FPFVWDEDCFEAAK 160 TMalign alignment (TM-score: 0.67 Raw score:82.39) query 1 -MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGG---EVA-RATSIVRYAPGSRF 55 :::: : : :::::::::::::::::::::::::::: : :::::::::::::: d1lrha_ 1 SCVRD-N--S-LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRT 54 query 56 SAHTHDGGEEFIVLDGVFQDE-------------HGDYPAGTYVRNPPTTSHVPGSAE-- 100 ::::::::::::::::::::: :::::::::::::::::::::::: d1lrha_ 55 PIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEH 114 query 101 -GCTIFVKLWQF----------------------------------DPADRTQFSKNM 123 ::::::::::: d1lrha_ 115 EDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK------------ 160 HHsearch alignment (Probability: 0.97 E-value:0.00) query 10 PVVIDTDQLEWRPSPMKGVERRML--DRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1lrha_ 7 SLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFT 66 query 68 VLDGVFQDEHGD-------------YPAGTYVRNPPTTSHVP--GSA-EGCTIFV 106 :::::::::::: ::::::::::::::::: ::: ::::::: d1lrha_ 67 VLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Intermediate <-- 0.700 --> HitDALI alignment (Z-score: 4.8 Raw score:512.40) d1lrha_ 1 ------------------------------------------------------------ 1 d1dcsa_ 1 mdttvptfslaelqqglhqdefrrclrdkglfyltdcgltdtelksakdlvidffehgse 60 d1lrha_ 1 ----SCVRDnslvrdisqMPQSSygiegLSHITvAGALNH-------------------- 36 ::::: ::::: ::::: :::::: d1dcsa_ 61 aekrAVTSP---vptmrrGFTGL-----SMCYS-MGTADNlfpsgdferiwtqyfdrqyt 111 d1lrha_ 37 ------------------------gmKEVEVWLQTISPgqRTPIHRHSC-EEVFTVLKG- 70 :::::::::::: ::::::::: ::::::::: d1dcsa_ 112 asravarevlratgtepdggveafldCEPLLRFRYFPQ-lRMAPHYDLSmVTLIQQTPCa 170 d1lrha_ 71 --kGTLLMGSsslkypGQPQEIPFFQNTTFSIPV------------NDPHQVWnSDEH-E 115 ::::::: :::::::::::::::::: ::::::: :::: : d1dcsa_ 171 ngfVSLQAEV-----gGAFTDLPYRPDAVLVFCGaiatlvtggqvkAPRHHVA-APIAgS 224 d1lrha_ 116 DLQVLVIISR----------------------------------pPAKIFLYDdwsmpht 141 :::::::::: :::::::: d1dcsa_ 225 SRTSSVFFLRpnadftfsvplarecgfdvsldgetatfqdwiggnYVNIRRTS------- 277 d1lrha_ 142 aavlkfpfvwdedcfeaak 160 d1dcsa_ 278 -----------------ka 279 FAST alignment (Normalized score: 3.40 Raw score:717.40) d1lrha_ 1 SCVRDNSLVRDISQMPQSSYGIEG------------------------------------ 24 d1dcsa_ 1 ------------------------MDTTVPTFSLAELQQGLHQDEFRRCLRDKGLFYLTD 36 d1lrha_ 25 --------------------------------------------LSHITVAGALNHGM-- 38 ::::: d1dcsa_ 37 CGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFTGLSMCYS---------MG 87 d1lrha_ 39 --------------------------------------------------KEVEVWLQTI 48 :::::::::: d1dcsa_ 88 TADNLFPSGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYF 147 d1lrha_ 49 SPGQ--RTPIHRHS-CEEVFTVLKGK------GTLLMGSSSLKY--PGQPQEIP-FFQNT 96 : :::::::: :::::::: ::::: ::::::: ::::: d1dcsa_ 148 P---QLRMAPHYDLSMVTLIQQT---PCANGFVSLQA-------EVGGAFTDL-PYRPDA 193 d1lrha_ 97 TFSIPV-------------NDPHQVWNSDEH-EDLQVLVIISRPPA-------------- 128 ::::: :::::::: ::: ::::::::: d1dcsa_ 194 VLVFC-GAIATLVTGGQVKAPRHHVAA-PIAGSSRTSSVFF-----LRPNADFTFSVPLA 246 d1lrha_ 129 -------------------------KIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK--- 160 :::: d1dcsa_ 247 RECGFDVSLDGETATFQDWIGGNYVNIRR----------------------------TSK 278 d1lrha_ 161 - 161 d1dcsa_ 279 A 279 TMalign alignment (TM-score: 0.53 Raw score:84.01) d1lrha_ 1 ------------------------------------------------------------ 1 d1dcsa_ 1 MDTTVPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSE 60 d1lrha_ 1 --------SCVR--DNSLVRDISQMPQSSYGIEGLSHITVAGALNH-------------- 36 :::: : ::::: ::::::::: :: d1dcsa_ 61 AEKRAVTSPVPTMR-------R--GFTGL-----SMCYSMGTA-DNLFPSGDFERIWTQY 105 d1lrha_ 37 -------------------------------GMKEVEVWLQTISPGQRTPIHRHSC-EEV 64 ::::::::::::: :::::::::: ::: d1dcsa_ 106 FDRQYTASRAVAREVLRATGTEPDGGVEAFL-DCEPLLRFRYFPQ-LRMAPHYDLSMVTL 163 d1lrha_ 65 FTVLKGK----GTLLMGSSSLKYPGQPQEIPFFQNTTFSIPV------------NDPHQV 108 ::: ::: ::::::: : :::::::::::::::::: :::::: d1dcsa_ 164 IQQ-TPCANGFVSLQAEV-G----GAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHV 217 d1lrha_ 109 WNSDEHEDLQVLVIISRP----------------------------------PAKIFLYD 134 :::::::::::::::::: :::::: d1dcsa_ 218 AAPIAGSSRTSSVFFLRPNADFTFSVPLARECGFDVSLDGETATFQDWIGGNYVNIRR-- 275 d1lrha_ 135 DWSMPHTAAVLKFPFVWDEDCFEAAK 160 : ::: d1dcsa_ 276 -----T-SKA---------------- 279 HHsearch alignment (Probability: 0.02 E-value:0.23) d1lrha_ 102 VNDPHQVWNSDEHEDLQVLVIISRPPAK 129 :::::::::::::::::::::::::::: d1dcsa_ 211 KAPRHHVAAPIAGSSRTSSVFFLRPNAD 238