Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1o5la1 | CRP-like transcriptional regulator TM1171, N-terminal domain | cAMP-binding domain-like | Double-stranded beta-helix | All β |
| Hit | d1o7fa2 | Regulatory domain of Epac2, domains 1 and 3 | cAMP-binding domain-like | Double-stranded beta-helix | All β |
Query <-- 1.374 --> IntermediateDALI alignment (Z-score: 4.4 Raw score:279.00) query 1 meinadftkpvvidtdqlewrpspmkgverrMLDRiggevaraTSIVRYAPGSR-FSAHT 59 :::: ::::::::::: ::::: d1o5la1 1 --------------------------mdlkkLLPC--------GKVIVFRKGEIvKHQDD 26 query 60 HdgGEEFIVLDGVFQDE----------HGDYPAGTYV-RNPP----TTSH-VPGSAEGCT 103 : :::::::::::::: :::::::::: :::: :::: ::::::::: d1o5la1 27 P-iEDVLILLEGTLKTEhvsengktleIDEIKPVQIIaSGFIfssePRFPvNVVAGENSK 85 query 104 IFVKLWQ------------------------fdpadrtqfsknm 123 ::::::: d1o5la1 86 ILSIPKEvfldllmkdrelllfflkdvsehfrvvseklfflttk 129 FAST alignment (Normalized score: 3.30 Raw score:415.50) query 1 MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGGEVAR--------ATSIVRYAPG 52 :::::::::: d1o5la1 1 ------------------------------------------MDLKKLLPCGKVIVFRKG 18 query 53 SRFSAHTHDG--------GEEFIVLDGVFQD-----------EHGDYPAGTYVRNPPTT- 92 :: :::::::::::: :::::::::: d1o5la1 19 EI--------VKHQDDPIEDVLILLEGTLK-TEHVSENGKTLEIDEIKPVQI-------I 62 query 93 ------------SHVPGSAEGCTIFVKLWQFDPADRTQFSKNM----------------- 123 ::::::::::::::: d1o5la1 63 ASGFIFSSEPRFPVNVVAGENSKILSI----------------PKEVFLDLLMKDRELLL 106 query 124 ----------------------- 124 d1o5la1 107 FFLKDVSEHFRVVSEKLFFLTTK 129 TMalign alignment (TM-score: 0.45 Raw score:55.05) query 1 ------MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSR 54 : :: ::::::::::: d1o5la1 1 MDLKKL--------------L-----------------PC---------GKVIVFRKGEI 20 query 55 FSAHTHDGGEEFIVLDGVFQDE----------HGDYPAGTYV-R-NP----PTTSHVPGS 98 :::::::::::::::::::::: :::::::::: : :: ::::::::: d1o5la1 21 VKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVA 80 query 99 AEGCTIFVKLWQF--D-------------PADRT-QFSK---------------NM 123 :::::::::: :: : : :::: d1o5la1 81 GENSKILSIP-KEVFLDLLMKDRELLLFF----LKDVSEHFRVVSEKLFFLTTK-- 129 HHsearch alignment (Probability: 0.09 E-value:0.01) query 44 TSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ 74 ::::::::::::::::::::::::::::::: d1o5la1 10 GKVIVFRKGEIVKHQDDPIEDVLILLEGTLK 40
Intermediate <-- 1.709 --> HitDALI alignment (Z-score: 12.1 Raw score:707.50) d1o5la1 1 --------------------------MDLK-----------kLLPCGKVIVFRKGEIVKH 23 :::: :::::::::::::::::: d1o7fa2 1 aewiacldkrplerssedvdiiftrlKGVKafekfhpnllrqICLCGYYENLEKGITLFR 60 d1o5la1 24 QDDPIEDVLILLEGTLKTEHVSENG--KTLEIDEIKPVQIIASgFIFSsEPRFPVNVVAG 81 ::::::::::::::::::::::::: :::::::::::::::: :::: ::::::::::: d1o7fa2 61 QGDIGTNWYAVLAGSLDVKVSETSShqDAVTICTLGIGTAFGE-SILD-NTPRHATIVTR 118 d1o5la1 82 ENSKILSIPKEVFLDLLMKDrelLLFFLKDVSE--HFRVvseklfflttk 129 :::::::::::::::::::: :::::::::: :::: d1o7fa2 119 ESSELLRIEQEDFKALWEKY---RQYMAGLLAPpyGVME----------t 155 FAST alignment (Normalized score: 9.91 Raw score:1401.00) d1o5la1 1 MDLK-----------------------------------------KLLPCGKVIVFRKGE 19 ::::::::::::::: d1o7fa2 1 ----AEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGI 56 d1o5la1 20 IVKHQDDPIEDVLILLEGTLKTEHVSEN---GKTLEIDEIKPVQIIASGFIFSSE--PRF 74 ::::::::::::::::::::::::::: :::::::::::::::: :::: ::: d1o7fa2 57 TLFRQGDIGTNWYAVLAGSLDVKVSET-SSHQDAVTICTLGIGTAFG-ESIL---DNTPR 111 d1o5la1 75 PVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTK----- 129 :::::::::::::::::::::::::: :::::::: d1o7fa2 112 HATIVTRESSELLRIEQEDFKALWEK---YRQYMAGL------------------LAPPY 150 d1o5la1 130 ----- 130 d1o7fa2 151 GVMET 155 TMalign alignment (TM-score: 0.70 Raw score:90.03) d1o5la1 1 -------------------------------MD-L----KK-LLPCGKVIVFRKGEIVKH 23 :: : :: :::::::::::::::::: d1o7fa2 1 AEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFR 60 d1o5la1 24 QDDPIEDVLILLEGTLKTEHVSE-N-GKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAG 81 ::::::::::::::::::::::: : ::::::::::::::::: :::: ::::::::::: d1o7fa2 61 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILD-NTPRHATIVTR 118 d1o5la1 82 ENSKILSIPKEVFLDLL-MKDRELLLFFLKDVSE--HFRV-VSEKLFFLTTK 129 ::::::::::::::::: : : :::::::::: :::: d1o7fa2 119 ESSELLRIEQEDFKALWEK--Y--RQYMAGLLAPPYGVMET----------- 155 HHsearch alignment (Probability: 1.00 E-value:0.00) d1o5la1 2 DLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSEN--GKTLEIDEIKPV 59 :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: d1o7fa2 39 LLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIG 98 d1o5la1 60 QIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLK 110 ::::: ::::::: ::::::::::::::::::::::::::::::::::::: d1o7fa2 99 TAFGE-SILDNTP-RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 147