Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1o5la1 | CRP-like transcriptional regulator TM1171, N-terminal domain | cAMP-binding domain-like | Double-stranded beta-helix | All β |
| Hit | d1o7fa3 | Regulatory domain of Epac2, domains 1 and 3 | cAMP-binding domain-like | Double-stranded beta-helix | All β |
Query <-- 1.374 --> IntermediateDALI alignment (Z-score: 4.4 Raw score:279.00) query 1 meinadftkpvvidtdqlewrpspmkgverrMLDRiggevaraTSIVRYAPGSR-FSAHT 59 :::: ::::::::::: ::::: d1o5la1 1 --------------------------mdlkkLLPC--------GKVIVFRKGEIvKHQDD 26 query 60 HdgGEEFIVLDGVFQDE----------HGDYPAGTYV-RNPP----TTSH-VPGSAEGCT 103 : :::::::::::::: :::::::::: :::: :::: ::::::::: d1o5la1 27 P-iEDVLILLEGTLKTEhvsengktleIDEIKPVQIIaSGFIfssePRFPvNVVAGENSK 85 query 104 IFVKLWQ------------------------fdpadrtqfsknm 123 ::::::: d1o5la1 86 ILSIPKEvfldllmkdrelllfflkdvsehfrvvseklfflttk 129 FAST alignment (Normalized score: 3.30 Raw score:415.50) query 1 MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGGEVAR--------ATSIVRYAPG 52 :::::::::: d1o5la1 1 ------------------------------------------MDLKKLLPCGKVIVFRKG 18 query 53 SRFSAHTHDG--------GEEFIVLDGVFQD-----------EHGDYPAGTYVRNPPTT- 92 :: :::::::::::: :::::::::: d1o5la1 19 EI--------VKHQDDPIEDVLILLEGTLK-TEHVSENGKTLEIDEIKPVQI-------I 62 query 93 ------------SHVPGSAEGCTIFVKLWQFDPADRTQFSKNM----------------- 123 ::::::::::::::: d1o5la1 63 ASGFIFSSEPRFPVNVVAGENSKILSI----------------PKEVFLDLLMKDRELLL 106 query 124 ----------------------- 124 d1o5la1 107 FFLKDVSEHFRVVSEKLFFLTTK 129 TMalign alignment (TM-score: 0.45 Raw score:55.05) query 1 ------MEINADFTKPVVIDTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSR 54 : :: ::::::::::: d1o5la1 1 MDLKKL--------------L-----------------PC---------GKVIVFRKGEI 20 query 55 FSAHTHDGGEEFIVLDGVFQDE----------HGDYPAGTYV-R-NP----PTTSHVPGS 98 :::::::::::::::::::::: :::::::::: : :: ::::::::: d1o5la1 21 VKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVA 80 query 99 AEGCTIFVKLWQF--D-------------PADRT-QFSK---------------NM 123 :::::::::: :: : : :::: d1o5la1 81 GENSKILSIP-KEVFLDLLMKDRELLLFF----LKDVSEHFRVVSEKLFFLTTK-- 129 HHsearch alignment (Probability: 0.09 E-value:0.01) query 44 TSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ 74 ::::::::::::::::::::::::::::::: d1o5la1 10 GKVIVFRKGEIVKHQDDPIEDVLILLEGTLK 40
Intermediate <-- 1.776 --> HitDALI alignment (Z-score: 11.8 Raw score:563.70) d1o5la1 1 ------------MDLK-----------kLLPCGKVIVF-RKGEIVKHQDDPIEDVLILLE 36 :::: :::::::::: ::::::::::::::::::::: d1o7fa3 1 tvddleiiydelLHIKalshlsttvkreLAGVLIFESHaKGGTVLFNQGEEGTSWYIILK 60 d1o5la1 37 GTLKTEHVSengkTLEIDEIKPVQIIASGFIFSsEPRFPVNVVAGEN-SKILSIPKEVFL 95 ::::::::: :::::::::::::::::::: ::::::::::::: :::::::::::: d1o7fa3 61 GSVNVVIYG----KGVVCTLHEGDDFGKLALVN-DAPRAASIVLREDnCHFLRVDKEDFN 115 d1o5la1 96 DLLMKDRelllfflkdvsehfrvvseklfflttk 129 ::::::: d1o7fa3 116 RILRDVE-------------------------an 124 FAST alignment (Normalized score: 9.03 Raw score:1142.00) d1o5la1 1 MDLKK----------------------------LLPCGKVIVF-RKGEIVKHQDDPIEDV 31 :::::::::: :::::::::::::::: d1o7fa3 1 -----TVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSW 55 d1o5la1 32 LILLEGTLKTEHVSENGK--TLEIDEIKPVQIIASGFIFSSEPRFPVNVVAG-ENSKILS 88 :::::::::::: ::::::::::::::::::::: :::::::::: ::::::: d1o7fa3 56 YIILKGSVNVVI------YGKGVVCTLHEGDDFGKLALVND-APRAASIVLREDNCHFLR 108 d1o5la1 89 IPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTK---- 129 :::::::::::: d1o7fa3 109 VDKEDFNRILRD-----------------------------VEAN 124 TMalign alignment (TM-score: 0.60 Raw score:76.94) d1o5la1 1 ------------MDL--K-------K--LLPCGKVIVF-RKGEIVKHQDDPIEDVLILLE 36 ::: : : :::::::::: ::::::::::::::::::::: d1o7fa3 1 TVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILK 60 d1o5la1 37 GTLKTEHVSENGKTLEIDEIKPVQIIASGFI-FSSEPRFPVNVVAGEN-SKILSIPKEVF 94 ::::::::: ::::::::::::::: :: :: ::::::::::::: ::::::::::: d1o7fa3 61 GSVNVVIYG----KGVVCTLHEGDDFGK-LALVN-DAPRAASIVLREDNCHFLRVDKEDF 114 d1o5la1 95 L-DLLMK---DRELLLFFLKDVSEHFRVVSEKLFFLTTK 129 : ::::: d1o7fa3 115 NRILRDVEAN----------------------------- 124 HHsearch alignment (Probability: 1.00 E-value:0.00) d1o5la1 2 DLKKLLPCGKVIVFR-KGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQ 60 ::::::::::::::: :::::::::::::::::::::::::::::: :::::::::: d1o7fa3 25 VKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK----GVVCTLHEGD 80 d1o5la1 61 IIASGFIFSSEPRFPVNVVAGEN-SKILSIPKEVFLDLLMKDRE 103 ::::::::::::: ::::::::: :::::::::::::::::::: d1o7fa3 81 DFGKLALVNDAPR-AASIVLREDNCHFLRVDKEDFNRILRDVEA 123