Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0582_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1sfna_ | Hypothetical protein DR1152 | RmlC-like cupins | Double-stranded beta-helix | All β |
| Hit | d1cx4a2 | Regulatory subunit of Protein kinase A | cAMP-binding domain-like | Double-stranded beta-helix | All β |
Query <-- 1.868 --> IntermediateDALI alignment (Z-score: 10.4 Raw score:726.80) query 1 -----meinadfTKPVVIDTDQLEWRPSP-MKGVERRMLDRIG--gevARATSIVRYAPG 52 ::::::::::::::::: ::::::::::::: :::::::::::: d1sfna_ 1 mkhlgqtrsalhGSHAVITPETFVRTALAeWPGSAIVLHIAPVvglgaRFVQFTAEMPAG 60 query 53 SRfsaHTHDGGEEFIVLDGVFQDE----HGDYPAGTYVRNPPTTSHVPGSAEGCTIFVKL 108 :: ::::::::::::::::::: :::::::::::::::::::::::::::::::: d1sfna_ 61 AQ--aTESVYQRFAFVLSGEVDVAvggeTRTLREYDYVYLPAGEKHMLTAKTDARVSVFE 118 query 109 WqFDPA-----DRTQFSKNM---------------------------------------- 123 : :::: ::::::::: d1sfna_ 119 K-PYQTvegvqAPGVYWGNErenpgypfegddhliarkllpdepafdfmvstmsfapgas 177 query 124 ------------------------------------------------------------ 124 d1sfna_ 178 lpyaevhymehgllmlegeglykleenyypvtagdiiwmgahcpqwygalgrnwskylly 237 query 124 -------- 124 d1sfna_ 238 kdmnrhpl 245 FAST alignment (Normalized score: 7.10 Raw score:1232.00) query 1 MEINADF------------TKPVVIDTDQLEWRPS-PMKGVERRMLDRIGGEVA------ 41 :::::::::::::::: ::::::::::: d1sfna_ 1 -------MKHLGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHI-------APVVGL 46 query 42 ---RATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE-----HGDYPAGTYVRNPPTTS 93 :::::::::::::::: :::::::::::::::: ::::::::::::::::: d1sfna_ 47 GARFVQFTAEMPAGAQATE--SVYQRFAFVLSGEVDV-AVGGETRTLREYDYVYLPAGEK 103 query 94 HVPGSAEGCTIFVKLWQFDP----------ADRTQFSKNM-------------------- 123 :::::::::::::: :::::::: d1sfna_ 104 HMLTAKTDARVSVF------EKPYQTVEGVQAPGVYWG--NERENPGYPFEGDDHLIARK 155 query 124 ------------------------------------------------------------ 124 d1sfna_ 156 LLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIW 215 query 124 ------------------------------ 124 d1sfna_ 216 MGAHCPQWYGALGRNWSKYLLYKDMNRHPL 245 TMalign alignment (TM-score: 0.75 Raw score:91.78) query 1 ----------MEINADFTKPVVIDTDQ-LEWRPSP-MKGVERRMLDRIG-----GEVARA 43 ::::::::: :: ::::::: ::::::::::::: ::: d1sfna_ 1 MKHLGQTRSA-----LHGSHAVIT-PETFVRTALAEWPGSAIVLHIAPVVGLGA---RFV 51 query 44 TSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQDE----HGDYPAGTYVRNPPTTSHVPGSA 99 :::::::::::: :: ::::::::::::::::: ::::::::::::::::::::::: d1sfna_ 52 QFTAEMPAGAQA-TE-SVYQRFAFVLSGEVDVAVGGETRTLREYDYVYLPAGEKHMLTAK 109 query 100 EGCTIFVKLWQFDP----ADRTQFSKNM-------------------------------- 123 :::::::::::::: :::::::::: d1sfna_ 110 TDARVSVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVST 169 query 124 ------------------------------------------------------------ 124 d1sfna_ 170 MSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 query 124 ---------------- 124 d1sfna_ 230 NWSKYLLYKDMNRHPL 245 HHsearch alignment (Probability: 0.96 E-value:0.00) query 11 VVIDTDQLEWRPSPM-KGVERRMLDRI--GGEVARATSIVRYAPGSRFSAHTHDGGEEFI 67 ::::::::::::::: ::::::::::: ::::::::::::::::::::::::: :::: d1sfna_ 16 AVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQATESVYQ--RFAF 73 query 68 VLDGVFQ----DEHGDYPAGTYVRNPPTTSHVPGSAEGCTIFVKLWQFDPAD 115 ::::::: ::::::::::::::::::::::::::::::::::::::::: d1sfna_ 74 VLSGEVDVAVGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQTVE 125
Intermediate <-- 1.553 --> HitDALI alignment (Z-score: 6.1 Raw score:350.80) d1sfna_ 1 mkhlgqtrsalhgshavitpetfvrtalaewpgsaivlhiapvvglgarfvqFTAEMPAG 60 :::::::: d1cx4a2 1 ---------------------------esfieslpflkslevserlkvvdviGTKVYNDG 33 d1sfna_ 61 AQATE--SVYQRFAFVLSGEVDVAVG----GETRTLREYDYV-YLPA----GEKHMLTAK 109 ::::: ::::::::::::::::::: :::::::::::: :::: ::::::::: d1cx4a2 34 EQIIAqgDSADSFFIVESGEVRITMKrngaVEIARCLRGQYFgELALvtnkPRAASAHAI 93 d1sfna_ 110 TDARVSVFEKpyqtvegvqapgvywgnerenpgypfegddhliarkllpdepafdfmvst 169 :::::::::: d1cx4a2 94 GTVKCLAMDV-------------------------------------------------- 103 d1sfna_ 170 msfapgaslpyaevhymehgllmlegeglykleenyypvtagdiiwmgahcpqwygalgr 229 d1cx4a2 104 ------------------------------------------------------------ 104 d1sfna_ 230 nwskyllYKDM-------------------------nrhpl 245 :::: d1cx4a2 104 -----qaFERLlgpcmeimkrniatyeeqlvalfgtnmdiv 139 FAST alignment (Normalized score: 3.31 Raw score:610.10) d1sfna_ 1 MKHLGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARF---------- 50 d1cx4a2 1 --------------------------------------------------ESFIESLPFL 10 d1sfna_ 51 -------------VQFTAEMPAGAQATE-----SVYQRFAFVLSGEVDVAVGGE------ 86 :::::::::::: :::::::::::::::::: d1cx4a2 11 KSLEVSERLKVVDVIGTKVYNDGEQ---IIAQGDSADSFFIVESGEVRITM---KRNGAV 64 d1sfna_ 87 -TRTLREYDYVYLP---------AGEKHMLTAKTDARVSVFEKPYQTVEGVQAPGVYWGN 136 ::::::::: :::::::::::::::::: d1cx4a2 65 EIARCLRGQY----FGELALVTNKPRAASAHAIGTVKCLAM------------------- 101 d1sfna_ 137 ERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGE 196 d1cx4a2 102 ------------------------------------------------------------ 102 d1sfna_ 197 GLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMNRHPL----------- 245 d1cx4a2 102 -------------------------------------------------DVQAFERLLGP 112 d1sfna_ 246 --------------------------- 246 d1cx4a2 113 CMEIMKRNIATYEEQLVALFGTNMDIV 139 TMalign alignment (TM-score: 0.29 Raw score:70.54) d1sfna_ 1 ----MKHLGQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTA- 55 :::: : ::: d1cx4a2 1 ESFI---------------------------------ESLP-F-------------LKSL 13 d1sfna_ 56 -EMPAGAQATESVYQRFAFVLSGEVDVAVGGETRTLREYDYVYLPAGEKHMLTAKTDARV 114 : :: ::::: : d1cx4a2 14 E-------V-SE-RLKVV------------------------D----------------- 23 d1sfna_ 115 SVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAP 174 : :::::::: d1cx4a2 24 ------------------------------------------V---------IGTKVYND 32 d1sfna_ 175 GASLPYAEVHYMEHGLLMLEGEGLYKLEE----NYYPVTAGDII-WMG---AHCP-QWYG 225 :::::::::::: :::::::::::::::: ::::::::::: ::: :::: :::: d1cx4a2 33 GEQIIAQGDSAD-SFFIVESGEVRITMKRNGAVEIARCLRGQYFGELALVTNKPRAASAH 91 d1sfna_ 226 ALGRNWSKYLLYKDMN----------------------------------RHPL 245 ::: ::::::::::: d1cx4a2 92 AIG--TVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFGTNMDIV---- 139 HHsearch alignment (Probability: 0.52 E-value:0.00) d1sfna_ 65 ESVYQRFAFVLSGEVDVAVGGE----TRTLREYDY-----VYLPAGEKHMLTAKTDARVS 115 :::::::::::::::::::::: ::::::::: :::::::::::::::::::: d1cx4a2 40 GDSADSFFIVESGEVRITMKRNGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCL 99 d1sfna_ 116 VFEK 119 :::: d1cx4a2 100 AMDV 103