Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0611_Ad2.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ui5a2 | A-factor receptor homolog CprB | Tetracyclin repressor-like, C-terminal domain | Tetracyclin repressor-like, C-terminal domain | All α |
| Hit | d1t33a2 | Putative transcriptional repressor YbiH | Tetracyclin repressor-like, C-terminal domain | Tetracyclin repressor-like, C-terminal domain | All α |
Query <-- 1.085 --> IntermediateDALI alignment (Z-score: 10.2 Raw score:639.30) query 1 fqeyeklvdyyldipedrpITLEDMTFYLESVFDGLWS---YRFFHRDL-EYLLdsdprL 56 ::::::::::::::::::: :::::::: :::: : d1ui5a2 1 ------------------ySSLEALMRLTFGMARLCVQgpvLRAGLRLAtAGVP-----V 37 query 57 RQDyREFTNRCLAAINRIFAKLADAGIIQPQPedLRSAMSLNVWLVITNWMAFlktahlt 116 ::: :::::::::::::::::::::::::::: ::::::::::::::::::: d1ui5a2 38 RPL-PHPFTEWREIATSRLLDAVRQSDVHQDI--DVDSVAHTLVCSVVGTRVV------- 87 query 117 ELKQGIYQVLTLEV-PYLTPEYRERVLALREKYRP-- 150 :::::::::::::: :::::::::::::::::::: d1ui5a2 88 REPRRLAEMWYILIrGMVPVTRRARYVTLAARLEQet 124 FAST alignment (Normalized score: 8.29 Raw score:1131.00) query 1 FQEYEKLVDYYLDIPEDRPI--TLEDMTFYLESVFDGLWS---YRFFHRDLEYLLDSDPR 55 :::::::::::::::::: ::::::::: d1ui5a2 1 --------------------YSSLEALMRLTFGMARLCVQGPVLRAGLRLAT-------- 32 query 56 LRQDYR---------EFTNRCLAAINRIFAKLADAGIIQPQPED---LRSAMSLNVWLVI 103 :::::::::::::::::::::::: ::::::::::::: d1ui5a2 33 ------AGVPVRPLPHPFTEWREIATSRLLDAVRQSDVH-----QDIDVDSVAHTLVCSV 81 query 104 TNWMAFLKTA------HLTEL-KQGIYQVLTLEVPYLTPEYRERVLALREKYRP----- 150 ::::: :::::::: :::::::::::::::::: d1ui5a2 82 ----------VGTRVVREPRRLAEMWYILI---RGMVPVTRRARYVTLAAR---LEQET 124 TMalign alignment (TM-score: 0.61 Raw score:90.97) query 1 FQEYEKLVDYYLDIPEDRPITLEDMTFYLESVFDGLW-S--YRFFHRD-LEYLLDSDPRL 56 ::::: :::::::::::::: : ::::::: :: :: : : d1ui5a2 1 -----------------YSSLE-ALMRLTFGMARLCVQGPVLRAGLRLATA-GV---P-V 37 query 57 RQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAF-LKTAHL 115 ::::: :::::::::::::::::::::::::: :::::::::::::::: :: d1ui5a2 38 RPLPH-PFTEWREIATSRLLDAVRQSDVHQDI--DVDSVAHTLVCSVVGT-RVV------ 87 query 116 TELKQGIYQVL-TLEVPYLTPEYRERVLALREK-YR--P 150 :::::::::: ::::::::::::::::::::: :: d1ui5a2 88 -REPRRLAEMWYILIRGMVPVTRRARYVTLAARLEQET- 124 HHsearch alignment (Probability: 0.32 E-value:0.01) query 46 LEYLLDSDPRLRQDYREF------------TNRCLAAINRIFAKLADAGIIQPQPEDLRS 93 :::::::::::::::::: :::::::::::::::::::::::::::: : d1ui5a2 14 MARLCVQGPVLRAGLRLATAGVPVRPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVD-S 72 query 94 AMSLNVWLVITNWMAFLKTAHLTELKQGIYQVLTLEVPYLTPEYRERVLA 143 ::::::::::::::::::::::: ::::::::::::::::::: d1ui5a2 73 ----VAHTLVCSVVGTRVVREPRRLAE----MWYILIRGMVPVTRRARYV 114
Intermediate <-- 1.346 --> HitDALI alignment (Z-score: 7.8 Raw score:483.50) d1ui5a2 1 ----YSSLEALMRLTFGMARLCVqGPVLRAGLRLATAGV-----PVRPL-PHPFTEWREI 50 ::::::::::::::::::: ::::::::::::::: ::::: :::::::::: d1t33a2 1 apdrDAIRELILLACKNMIMLLT-QEDTVNLSKFISREQlsptsAYQLVhEQVIDPLHTH 59 d1ui5a2 51 ATSRLLDAvrqsdVHQD---iDVDSVAHTLVCSVVGTRVV-------------------R 88 :::::::: :::: ::::::::::::::::::: : d1t33a2 60 LTRLVAAY-----TGCDandtRMILHTHALLGEVLAFRLGketillrtgwpqfdeekaeL 114 d1ui5a2 89 EPRRLAEMWYILIRGMVPvtrraryvtlaarleqet 124 :::::::::::::::::: d1t33a2 115 IYQTVTCHIDLILHGLTQ------------------ 132 FAST alignment (Normalized score: 4.51 Raw score:576.90) d1ui5a2 1 ----YSSLEALMRLTFGMARLCV--QGPVLRAGLRLATAGVPVRPLP---HPFT-EWREI 50 ::::::::::::::::::: ::::::::::::: ::::: :::: ::::: d1t33a2 1 APDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQ--LSPTS--AYQLVHEQVIDPL 56 d1ui5a2 51 ATSRLLDAVRQSDVHQDI---------DVDSVAHTLVCSVVGTRVVR------------- 88 :::::::::: ::::::::::::: d1t33a2 57 HTHLTRLVAA--------YTGCDANDTRMILHTHALLGEV-------LAFRLGKETILLR 101 d1ui5a2 89 ------EPRRLAEMWYILIRGMVPVTRRARYVTLAARLEQET--------- 124 :::::::::::::::: d1t33a2 102 TGWPQFDEEKAELIYQTVTCHI--------------------DLILHGLTQ 132 TMalign alignment (TM-score: 0.59 Raw score:73.01) d1ui5a2 1 ----YSSLEALMRLTFGMARLCVQGPVLRAGLRLATAG---VP-VRPLPH--PFTEWREI 50 :::::::::::::::::::::: ::::::::::: :: :::::: :::::::: d1t33a2 1 APDRDAIRELILLACKNMIMLLTQED-TVNLSKFISREQLSPTSAYQLVHEQVIDPLHTH 59 d1ui5a2 51 ATSRLLDAVRQSDVHQD----IDVDSVAHTLVCSVVGTRVV----------------REP 90 :::::::::: :: ::::::::::::::::::: ::: d1t33a2 60 LTRLVAAYTG-----CDANDT-RMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAE 113 d1ui5a2 91 RRLAEMWYILIRGMVP---VTRRARYVTLAARLEQET 124 :::::::::::::::: d1t33a2 114 LIYQTVTCHIDLILHGLTQ------------------ 132 HHsearch alignment (Probability: 0.00 E-value:2.00) d1ui5a2 62 SDVHQDIDVDSVAHTLVCSVVGTRV 86 ::::::::::::::::::::::::: d1t33a2 65 AAYTGCDANDTRMILHTHALLGEVL 89