Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0611_Ad2.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ui5a2 | A-factor receptor homolog CprB | Tetracyclin repressor-like, C-terminal domain | Tetracyclin repressor-like, C-terminal domain | All α |
| Hit | d1jt6a2 | Multidrug binding protein QacR | Tetracyclin repressor-like, C-terminal domain | Tetracyclin repressor-like, C-terminal domain | All α |
Query <-- 1.085 --> IntermediateDALI alignment (Z-score: 10.2 Raw score:639.30) query 1 fqeyeklvdyyldipedrpITLEDMTFYLESVFDGLWS---YRFFHRDL-EYLLdsdprL 56 ::::::::::::::::::: :::::::: :::: : d1ui5a2 1 ------------------ySSLEALMRLTFGMARLCVQgpvLRAGLRLAtAGVP-----V 37 query 57 RQDyREFTNRCLAAINRIFAKLADAGIIQPQPedLRSAMSLNVWLVITNWMAFlktahlt 116 ::: :::::::::::::::::::::::::::: ::::::::::::::::::: d1ui5a2 38 RPL-PHPFTEWREIATSRLLDAVRQSDVHQDI--DVDSVAHTLVCSVVGTRVV------- 87 query 117 ELKQGIYQVLTLEV-PYLTPEYRERVLALREKYRP-- 150 :::::::::::::: :::::::::::::::::::: d1ui5a2 88 REPRRLAEMWYILIrGMVPVTRRARYVTLAARLEQet 124 FAST alignment (Normalized score: 8.29 Raw score:1131.00) query 1 FQEYEKLVDYYLDIPEDRPI--TLEDMTFYLESVFDGLWS---YRFFHRDLEYLLDSDPR 55 :::::::::::::::::: ::::::::: d1ui5a2 1 --------------------YSSLEALMRLTFGMARLCVQGPVLRAGLRLAT-------- 32 query 56 LRQDYR---------EFTNRCLAAINRIFAKLADAGIIQPQPED---LRSAMSLNVWLVI 103 :::::::::::::::::::::::: ::::::::::::: d1ui5a2 33 ------AGVPVRPLPHPFTEWREIATSRLLDAVRQSDVH-----QDIDVDSVAHTLVCSV 81 query 104 TNWMAFLKTA------HLTEL-KQGIYQVLTLEVPYLTPEYRERVLALREKYRP----- 150 ::::: :::::::: :::::::::::::::::: d1ui5a2 82 ----------VGTRVVREPRRLAEMWYILI---RGMVPVTRRARYVTLAAR---LEQET 124 TMalign alignment (TM-score: 0.61 Raw score:90.97) query 1 FQEYEKLVDYYLDIPEDRPITLEDMTFYLESVFDGLW-S--YRFFHRD-LEYLLDSDPRL 56 ::::: :::::::::::::: : ::::::: :: :: : : d1ui5a2 1 -----------------YSSLE-ALMRLTFGMARLCVQGPVLRAGLRLATA-GV---P-V 37 query 57 RQDYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNWMAF-LKTAHL 115 ::::: :::::::::::::::::::::::::: :::::::::::::::: :: d1ui5a2 38 RPLPH-PFTEWREIATSRLLDAVRQSDVHQDI--DVDSVAHTLVCSVVGT-RVV------ 87 query 116 TELKQGIYQVL-TLEVPYLTPEYRERVLALREK-YR--P 150 :::::::::: ::::::::::::::::::::: :: d1ui5a2 88 -REPRRLAEMWYILIRGMVPVTRRARYVTLAARLEQET- 124 HHsearch alignment (Probability: 0.32 E-value:0.01) query 46 LEYLLDSDPRLRQDYREF------------TNRCLAAINRIFAKLADAGIIQPQPEDLRS 93 :::::::::::::::::: :::::::::::::::::::::::::::: : d1ui5a2 14 MARLCVQGPVLRAGLRLATAGVPVRPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVD-S 72 query 94 AMSLNVWLVITNWMAFLKTAHLTELKQGIYQVLTLEVPYLTPEYRERVLA 143 ::::::::::::::::::::::: ::::::::::::::::::: d1ui5a2 73 ----VAHTLVCSVVGTRVVREPRRLAE----MWYILIRGMVPVTRRARYV 114
Intermediate <-- 1.498 --> HitDALI alignment (Z-score: 9.7 Raw score:544.40) d1ui5a2 1 YSSLEALMRLTFGMARLCVQGPVlRAGLRLATAGVP----VRPL-PHPFTEWREIATSRL 55 ::::::::::::::::::::::: :::::::::::: :::: ::::::::::::::: d1jt6a2 1 KTNREKFYLYNELSLTTEYYYPL-QNAIIEFYTEYYktnsINEKmNKLENKYIDAYHVIF 59 d1ui5a2 56 LDAVRQSDVHQdIDVDSVAHTLVCSVVG-------trvvREPRRLAEMWYILIRGMVpvt 108 ::::::::::: :::::::::::::::: :::::::::::::::::: d1jt6a2 60 KEGNLNGEWSI-NDVNAVSKIAANAVNGivtftheqninERIKLMNKFSQIFLNGLS--- 115 d1ui5a2 109 rraryvtlaarleqet 124 d1jt6a2 116 ---------------- 116 FAST alignment (Normalized score: 8.92 Raw score:1066.00) d1ui5a2 1 YSSLEALMRLTFGMARLCVQGPVLRAGLRLATAGVPVRPLP-------------HPFTEW 47 :::::::::::::::::::::::::::::::: :::::: d1jt6a2 1 KTNREKFYLYNELSLTTEYYYPLQNAIIEFYT---------EYYKTNSINEKMNKLENKY 51 d1ui5a2 48 REIATSRLLDAVRQSDVHQD--IDVDSVAHTLVCSVVGTRVV-------------REPRR 92 ::::::::::::::::: :::::::::::::: ::::: d1jt6a2 52 IDAYHVIFKEGNLNGEW---SINDVNAVSKIAANAV------NGIVTFTHEQNINERIKL 102 d1ui5a2 93 LAEMWYILIRGMVPVTRRARYVTLAARLEQET-- 124 ::::::::::: d1jt6a2 103 MNKFSQIFLNG---------------------LS 115 TMalign alignment (TM-score: 0.64 Raw score:79.53) d1ui5a2 1 YSSLEALMRLTFGMARLCVQGPVLRAGLR-LATA-G-V--PVRPLPHPFTEWREIATSRL 55 ::::::::::::::::::::::::::: : :::: : : :::::::::::::::::::: d1jt6a2 1 KTNREKFYLYNELSLTTEYYYPLQNAI-IEFYTEYYKTNSINEKMNKLENKYIDAYHVIF 59 d1ui5a2 56 LDAVRQSDVHQDIDVDSVAHTLVCSVVGT-RV-------VREPRRLAEMWYILIRGMVPV 107 :::::::::: :::::::::::::::::: :: :::::::::::::::::: d1jt6a2 60 KEGNLNGEWS-INDVNAVSKIAANAVNGIVTFTHEQNIN-ERIKLMNKFSQIFLNGLS-- 115 d1ui5a2 108 TRRARYVTLAARLEQET 124 d1jt6a2 116 ----------------- 116 HHsearch alignment (Probability: 0.00 E-value:1.40) d1ui5a2 60 RQSDVHQDI---DVDSVAHTLVCSVVGTRVVREPRRL 93 ::::::::: ::::::::::::::::::::::::: d1jt6a2 60 KEGNLNGEWSINDVNAVSKIAANAVNGIVTFTHEQNI 96