Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0611_Ad2.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1t56a2 | Ethr repressor | Tetracyclin repressor-like, C-terminal domain | Tetracyclin repressor-like, C-terminal domain | All α |
| Hit | d1ui5a2 | A-factor receptor homolog CprB | Tetracyclin repressor-like, C-terminal domain | Tetracyclin repressor-like, C-terminal domain | All α |
Query <-- 1.356 --> IntermediateDALI alignment (Z-score: 9.2 Raw score:578.80) query 1 fqeyeklvdyyldipedrpiTLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDY 60 :::::::::::::::::::::::::::::::::::::::: d1t56a2 1 ----------------adtdRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELW 44 query 61 REFTNRCLAAINRIFAKLADAGIIQPQPedLRSAMSLNVWLVITNWMAFL--KTAH---L 115 :::::::::::::::::::::::::::: :::::::::::::::::::: :::: : d1t56a2 45 STFMQKWIAYTAAVIDAERDRGAAPRTL--PAHELATALNLMNERTLFASfaGEQPsvpE 102 query 116 TELK-QGIYQVLTLEVPYltpeyrervlalrekyrp 150 :::: ::::::::::::: d1t56a2 103 ARVLdTLVHIWVTSIYGE------------------ 120 FAST alignment (Normalized score: 8.62 Raw score:1156.00) query 1 FQEYEKLVDYYLDIPEDRPI----TLEDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRL 56 :::::::::::::::::::::::::::::::::::: d1t56a2 1 --------------------ADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEV 40 query 57 RQDYREFTNRCLAAINRIFAKLADAGIIQPQ--PEDLRSAMSLNVWLVITNWMAFLKTAH 114 ::::::::::::::::::::::::::::::: :::::::::::::::::::: d1t56a2 41 AELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASF------- 93 query 115 LTE--------LKQGIYQVLTLEVPYLTPEYRERVLALREKYRP----- 150 :::::::::::::: d1t56a2 94 ---AGEQPSVPEARVLDTLVHIWVT-------------------SIYGE 120 TMalign alignment (TM-score: 0.56 Raw score:84.62) query 1 FQEYEKLVDYYLDIPEDRPITL-EDMTFYLESVFDGLWSYRFFHRD-LEYLLDSDPRLRQ 58 ::::: ::::::::::::::::::::::: ::::::::: ::: d1t56a2 1 -----------------ADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVE-VAE 42 query 59 DYREFTNRCLAAINRIFAKLADAGIIQPQPEDLRSAMSLNVWLVITNW-MAFL-K-TAH- 114 :::::::::::::::::::::::::::::: :::::::::::::::: :::: : ::: d1t56a2 43 LWSTFMQKWIAYTAAVIDAERDRGAAPRTL--PAHELATALNLMNERTLFASFAGEQPSV 100 query 115 LTELKQGI-YQVLTLEVPYLTPEYRERVLALREKYRP 150 :::::: ::::::::::::: d1t56a2 101 --PEARVLDTLVHIWVTSIYGE--------------- 120 HHsearch alignment (Probability: 0.73 E-value:0.00) query 23 EDMTFYLESVFDGLWSYRFFHRDLEYLLDSDPRLRQDYREFTNRCLAAINRIFAKLADAG 82 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: d1t56a2 7 NMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRG 66 query 83 IIQPQPEDLRSAMSLNVWLVITNWMAFLKT----AHLTELKQGIYQVL 126 :::::::::::::: ::::::::::::::: :::::::::::::: d1t56a2 67 AAPRTLPAHELATA-LNLMNERTLFASFAGEQPSVPEARVLDTLVHIW 113
Intermediate <-- 1.556 --> HitDALI alignment (Z-score: 7.8 Raw score:464.20) d1t56a2 1 adTDRENMWRTGINVFFETFGSHkAVTRAGQAAR-ATSVEvaelwSTFMQKWIAYTAAVI 59 ::::::::::::::::::::: :::::::::: ::::: ::::::::::::::: d1ui5a2 1 --YSSLEALMRLTFGMARLCVQG-PVLRAGLRLAtAGVPV--rplPHPFTEWREIATSRL 55 d1t56a2 60 DAERDRGAAPRTLPAHELATALNLMNERTlfasfageqpsvPEARVLDTLVHIWVTSIYG 119 ::::::::::::::::::::::::::::: ::::::::::::::::::: d1ui5a2 56 LDAVRQSDVHQDIDVDSVAHTLVCSVVGT---------rvvREPRRLAEMWYILIRGMVP 106 d1t56a2 120 E----------------- 120 : d1ui5a2 107 Vtrraryvtlaarleqet 124 FAST alignment (Normalized score: 8.30 Raw score:1012.00) d1t56a2 1 ADT-DRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWS--------TFMQKW 51 ::::::::::::::::::: ::::::::::::: :::::: d1ui5a2 1 ---YSSLEALMRLTFGMARLCVQ-GPVLRAGLRLATA---------GVPVRPLPHPFTEW 47 d1t56a2 52 IAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPS-----VPEARVL 106 :::::::::::::::::::::::::::::::::: ::::::: d1ui5a2 48 REIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSV--------------VGTRVVREPRRL 93 d1t56a2 107 DTLVHIWVTSIYGE-------------------- 120 ::::::::::: d1ui5a2 94 AEMWYILIRGM---VPVTRRARYVTLAARLEQET 124 TMalign alignment (TM-score: 0.62 Raw score:74.86) d1t56a2 1 ADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAEL-WSTFMQKWIAYTAAVI 59 :::: ::::::::::::::::::::::::::::: ::: :: :::::::::::::::: d1ui5a2 1 -YSSL-EALMRLTFGMARLCVQGPVLRAGLRLATA-GVP--VRPLPHPFTEWREIATSRL 55 d1t56a2 60 DAERDRGAAPRTLPAHELATALNLMNERTLFA-SFAGEQPSVPEARVLDTLVHIWVTSIY 118 ::::::::::::::::::::::::::::: :: :::::::::::::::::: d1ui5a2 56 LDAVRQSDVHQDIDVDSVAHTLVCSVVGT-RVV---------REPRRLAEMWYILIRGMV 105 d1t56a2 119 GE----------------- 120 :: d1ui5a2 106 PVTRRARYVTLAARLEQET 124 HHsearch alignment (Probability: 0.93 E-value:0.00) d1t56a2 23 HKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALN 82 :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: d1ui5a2 20 QGPVLRAGLRLATAGV-PVRPLPHPFTEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLV 78 d1t56a2 83 LMNER 87 ::::: d1ui5a2 79 CSVVG 83