HorA Server Transitive Detail

Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets. J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu


Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL


Query <-- 0.999 --> Intermediate <-- 0.998 --> Hit

HHsearch
probability
HHsearch
probability

The query (T592_B.pdb B) is transitively linked to the hit (d1hzma_) through the intermediate protein (d1e0ca1) by significant HHsearch probability (>0.9).

  SCOP Id Protein SCOP Superfamily SCOP Fold SCOP
Class
Intermediate d1e0ca1 SulfurtransferaseRhodanese/​Cell cycle control phosphataseRhodanese/​Cell cycle control phosphataseα/β
Hit d1hzma_ Erk2 binding domain of Mapk phosphatase mkp-​3Rhodanese/​Cell cycle control phosphataseRhodanese/​Cell cycle control phosphataseα/β

Supporting Alignments

Query <-- 0.999 --> Intermediate
DALI alignment (Z-score: 12.9 Raw score:767.20) query 1 npneayrhymkkLSYETDIADLSIDIkkGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI 60 :::::::::::::: :::::::::::::::::::::::::::::::: d1e0ca1 1 ------mddfasLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARFVDPKRT 52 query 61 ----------------NEDTTK--RLSKEKVIITYCWGPaCNGATKAAAKFAQLGF-RVK 101 :::::: ::::::::::::::: :::::::::::::::: ::: d1e0ca1 53 qlgqppapglqppreqLESLFGelGHRPEAVYVVYDDEG-GGWAGRFIWLLDVIGQqRYH 111 query 102 ELIGGIEYWRKENGEVEGTlgakadlfwnmkkesle 137 ::::::::::::::::::: d1e0ca1 112 YLNGGLTAWLAEDRPLSRE------------lpapa 135 FAST alignment (Normalized score: 11.21 Raw score:1524.00) query 1 NPNEAYRHYMKK------LSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 ------------MDDFASLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI-----------------NEDTTKRLS--KEKVIITYCWGP-ACNGATKAAAKFA 94 ::::: ::::::::: :::::::::: ::::::::::::: d1e0ca1 47 VDPKR-TQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDD--EGGGWAGRFIWLLD 103 query 95 QLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::: :::::::::::::::::::: d1e0ca1 104 VIGQQRYHYLNGGLTAWLAEDRPL--------------------SRELPAPA 135 TMalign alignment (TM-score: 0.67 Raw score:92.22) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 MDDFAS------------LPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI----------------NEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 :::::: :::::: ::::::::::::::: :::::::::::::: d1e0ca1 47 VDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEG-GGWAGRFIWLLDVI 105 query 97 GF-RVKELIGGIEYWRKENGEVEGT-----LGAKADLFWNMKKESLE 137 :: :::::::::::::::::::::: d1e0ca1 106 GQQRYHYLNGGLTAWLAEDRPLSRELPAPA----------------- 135 HHsearch alignment (Probability: 1.00 E-value:0.00) query 17 TDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI---------------- 60 :::::::::::: :::::::::::::::::::::::::::::: d1e0ca1 11 IEPADLQARLSA--PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQ 68 query 61 --NEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEV 117 :::::::::::::::::::::: ::::::::::::::: ::::::::::::::::::: d1e0ca1 69 LESLFGELGHRPEAVYVVYDDEGG-GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL 127 query 118 EGTLGAKA 125 :::::::: d1e0ca1 128 SRELPAPA 135
Intermediate <-- 0.998 --> Hit
DALI alignment (Z-score: 2.6 Raw score:254.20) d1e0ca1 1 mDDFAS-----LPLV-iepaDLQA-RLSA--PELILVDlTSAArYAEG-HIPG-ARFVDP 49 ::::: :::: :::: :::: ::::::: :::: :::: :::: :::::: d1hzma_ 1 mIDTLRpvpfaSEMAisktvAWLNeQLELgnERLLLMD-CRPQ-ELYEsSHIEsAINVAI 58 d1e0ca1 50 ----------------kRTQLGqppapglqppreqleSLFGELGHrpeAVYVVYDdeGGG 93 ::::: :::::::: ::::::: ::: d1hzma_ 59 pgimlrrlqkgnlpvraLFTRG------------edrDRFTRRCG--tDTVVLYD-eSSS 103 d1e0ca1 94 W-------agrfiWLLDV--IGQQRYHYLNG------glTAWLaedrpLSRElpapa 135 : ::::: ::::::::::: :::: :::: d1hzma_ 104 DwnentggesllgLLLKKlkDEGCRAFYLEGgfskfqaeFSLH----cETNL--dgs 154 FAST alignment (Normalized score: 2.34 Raw score:337.90) d1e0ca1 1 MDD----------FASLPLVIEPADL-------QARLSAPELILVDLTSAARYAEG---- 39 ::::::::: :::: ::::::: ::::::: d1hzma_ 1 ---MIDTLRPVPFASEMAISKT----VAWLNEQLELG-NERLLLM--DCRPQEL--YESS 48 d1e0ca1 40 HIPGARFVDPKRTQLGQPPAPGLQPPREQ---------------------LESLFGELGH 78 ::::::::: ::::::: d1hzma_ 49 HIESAINVA--------------------IPGIMLRRLQKGNLPVRALFTRGEDRDR--- 85 d1e0ca1 79 RPE-------AVYVVYDDEG-------------GGWAGRFIWLLDVIGQQRYHYLNGGLT 118 :::::: ::::::::::::::: ::::: d1hzma_ 86 ---FTRRCGTDTVVLY----DESSSDWNENTGGESLLGLLLKKLKDEG-CRAFY------ 131 d1e0ca1 119 AWLAEDRPLSRELPAPA----------------------- 135 d1hzma_ 132 -----------------LEGGFSKFQAEFSLHCETNLDGS 154 TMalign alignment (TM-score: 0.50 Raw score:66.97) d1e0ca1 1 -MDDFAS----LP-L-VIEPADLQA-RL-SA-PELILVDLTSAARYAEGH-IPG-ARFVD 48 :::::: :: : :::: :::: :: :: ::::::: :::: ::::: ::: ::::: d1hzma_ 1 MIDTLRPVPFASEMAISKTV-AWLNEQLELGNERLLLMD-CRPQ-ELYESSHIESAINVA 57 d1e0ca1 49 P----------------KRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEGG 92 : ::::: : ::: ::::: ::: :::::::: ::: d1hzma_ 58 IPGIMLRRLQKGNLPVRALFTR---------G--EDR-DRFTR-RCG-TDTVVLYD-ESS 102 d1e0ca1 93 GWAG--------RFIWLLDVI-GQ-QRYHYLNG-----G-LTAWLAEDRPLSR---ELPA 133 :: : ::::::::: :: :::::::: : ::::: ::::: d1hzma_ 103 SD-WNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKFQAEFSLH---CETNLDGS---- 154 d1e0ca1 134 PA 135 d1hzma_ 155 -- 155 HHsearch alignment (Probability: 1.00 E-value:0.00) d1e0ca1 7 LPLVIEPADLQARLSA--PELILVDLTSAARYAEGHIPGARFVDPKRTQLG-----QPPA 59 :::::::::::::::: ::::::::::::::::::::::::::::::::: :::: d1hzma_ 14 MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73 d1e0ca1 60 PGLQPPREQLESLFGELGHRPEAVYVVYDDEGGG------WAGRFIWLLDVIGQQ--RYH 111 ::::::::::::: :::::::::::::::::: ::::::::::::::: ::: d1hzma_ 74 RALFTRGEDRDRF---TRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAF 130 d1e0ca1 112 YLNGGLTAWLAEDRP 126 :::::::::::: :: d1hzma_ 131 YLEGGFSKFQAE-FS 144