Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1e0ca1 | Sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1urha2 | 3-mercaptopyruvate sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
Query <-- 0.999 --> IntermediateDALI alignment (Z-score: 12.9 Raw score:767.20) query 1 npneayrhymkkLSYETDIADLSIDIkkGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI 60 :::::::::::::: :::::::::::::::::::::::::::::::: d1e0ca1 1 ------mddfasLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARFVDPKRT 52 query 61 ----------------NEDTTK--RLSKEKVIITYCWGPaCNGATKAAAKFAQLGF-RVK 101 :::::: ::::::::::::::: :::::::::::::::: ::: d1e0ca1 53 qlgqppapglqppreqLESLFGelGHRPEAVYVVYDDEG-GGWAGRFIWLLDVIGQqRYH 111 query 102 ELIGGIEYWRKENGEVEGTlgakadlfwnmkkesle 137 ::::::::::::::::::: d1e0ca1 112 YLNGGLTAWLAEDRPLSRE------------lpapa 135 FAST alignment (Normalized score: 11.21 Raw score:1524.00) query 1 NPNEAYRHYMKK------LSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 ------------MDDFASLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI-----------------NEDTTKRLS--KEKVIITYCWGP-ACNGATKAAAKFA 94 ::::: ::::::::: :::::::::: ::::::::::::: d1e0ca1 47 VDPKR-TQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDD--EGGGWAGRFIWLLD 103 query 95 QLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::: :::::::::::::::::::: d1e0ca1 104 VIGQQRYHYLNGGLTAWLAEDRPL--------------------SRELPAPA 135 TMalign alignment (TM-score: 0.67 Raw score:92.22) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 MDDFAS------------LPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI----------------NEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 :::::: :::::: ::::::::::::::: :::::::::::::: d1e0ca1 47 VDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEG-GGWAGRFIWLLDVI 105 query 97 GF-RVKELIGGIEYWRKENGEVEGT-----LGAKADLFWNMKKESLE 137 :: :::::::::::::::::::::: d1e0ca1 106 GQQRYHYLNGGLTAWLAEDRPLSRELPAPA----------------- 135 HHsearch alignment (Probability: 1.00 E-value:0.00) query 17 TDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI---------------- 60 :::::::::::: :::::::::::::::::::::::::::::: d1e0ca1 11 IEPADLQARLSA--PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQ 68 query 61 --NEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEV 117 :::::::::::::::::::::: ::::::::::::::: ::::::::::::::::::: d1e0ca1 69 LESLFGELGHRPEAVYVVYDDEGG-GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL 127 query 118 EGTLGAKA 125 :::::::: d1e0ca1 128 SRELPAPA 135
Intermediate <-- 0.999 --> HitDALI alignment (Z-score: 12.3 Raw score:692.90) d1e0ca1 1 mddfaSLPLVIEPADLQARLSAPELILVDLTSAARYAE-------GHIPGARFVDPKRTQ 53 ::::::::::::::::::::::::::::::::: ::::::::::::::: d1urha2 1 -----NPEAVVKVTDVLLASHENTAQIIDARPAARFNAevdelrrGHIPGALNVPWTELV 55 d1e0ca1 54 LgqppaPGLQPPREQLESLFGE-LGHRpEAVYVVYDDEGgGWAGRFIWLLDVIGQQRYHY 112 : :::::::::::::::: :::: ::::::::::: :::::::::::::::::::: d1urha2 56 R-----EGELKTTDELDAIFFGrGVSY-DKPIIVSCGSG-VTAAVVLLALATLDVPNVKL 108 d1e0ca1 113 LNGgltaWLAEdrplsrelpapa 135 ::: :::: d1urha2 109 YDG----AWSE------------ 115 FAST alignment (Normalized score: 10.11 Raw score:1260.00) d1e0ca1 1 MDDFAS-LPLVIEPADLQARLSA--PELILVDLTSAARYA-------EGHIPGARFVDPK 50 :::::::::::::: ::::::::::::::: ::::::::::::: d1urha2 1 ------NPEAVVKVTDVLLAS--HENTAQIIDARPAARFNAEVDELRRGHIPGALNVPWT 52 d1e0ca1 51 RTQLGQPPA-PGLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQR 109 ::: ::::::::::::::::::::::::::::::: :::::::::::::::::: d1urha2 53 ELV------REGELKTTDELDAIFFGRGVSYDKPIIVSCGS-GVTAAVVLLALATLDVPN 105 d1e0ca1 110 YHYLNGGLTAWLAEDRPLSRELPAPA------ 135 :::: d1urha2 106 VKLY----------------------DGAWSE 115 TMalign alignment (TM-score: 0.65 Raw score:88.26) d1e0ca1 1 -MDDFASLPLVIEPADLQARLSAPELILVDLTSAARYAE------G-HIPGARFVDPKRT 52 :::::::::::::::::::::::::::::::: : ::::::::::::: d1urha2 1 N------PEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDELRRGHIPGALNVPWTEL 54 d1e0ca1 53 QLGQPPAPGLQPPREQLESLFGE-LGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYH 111 :: :::::::::::::::: :::: ::::::::::: ::::::::::::::::::: d1urha2 55 VR-----EGELKTTDELDAIFFGRGVSY-DKPIIVSCGSG-VTAAVVLLALATLDVPNVK 107 d1e0ca1 112 YLNGGLTAWLAE-DRPLSRELPAPA 135 :::: : :: d1urha2 108 LYDG---A--WSE------------ 115 HHsearch alignment (Probability: 1.00 E-value:0.00) d1e0ca1 6 SLPLVIEPADLQARLSAPELILVDLTSAARYA-------EGHIPGARFVDPKRTQLGQPP 58 :::::::::::::::::::::::::::::::: ::::::::::::::::::: d1urha2 1 NPEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDELRRGHIPGALNVPWTELVREG-- 58 d1e0ca1 59 APGLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: d1urha2 59 ---ELKTTDELDAIFFGRGVSYDKPIIVSCGS-GVTAAVVLLALATLDVPNVKLYDGAWS 114