Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tq1a_ | Thiosulfate sulfurtransferase/Senescence-associated protein | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1fpza_ | Kinase associated phosphatase (kap) | (Phosphotyrosine protein) phosphatases II | (Phosphotyrosine protein) phosphatases II | α/β |
Query <-- 0.999 --> IntermediateDALI alignment (Z-score: 3.7 Raw score:298.10) query 1 npneayrhymkklsYETDIADLSIDIKKGYegiIVVDVRDAEAYKECHI-PTAISIP--g 57 :::::::::::::::: :::::::::::::::: ::::::: d1tq1a_ 1 -------aeesrvpSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHAcGAINVPYmnr 50 query 58 nkineDTTK--------rlskeKVIITYCWGpacngaTKAAAKFAQLGFR-VKELIGGIE 108 :::: ::::::::: ::::::::::::: ::::::::: d1tq1a_ 51 gasgmSKNTdfleqvsshfgqsDNIIVGCQS--ggrsIKATTDLLHAGFTgVKDIVGGYS 108 query 109 YWRKeNGEVEGtlgakadlfwnmkkesle 137 :::: :::::: d1tq1a_ 109 AWAK-NGLPTK------------------ 118 FAST alignment (Normalized score: 4.04 Raw score:514.40) query 1 NPNEAYRHYMKKLS-------YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAI 53 ::::::::::::::: ::::::::::::::::::::: d1tq1a_ 1 --------------AEESRVPSSVSVTVAHDLLLAG---HRYLDVRTPEEFSQGHACGAI 43 query 54 SIPGNKINEDTTKRLSKEK---------------------------VIITYCWGPACN-- 84 ::: :::::::: d1tq1a_ 44 NVP----------------YMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQS----GG 83 query 85 GATKAAAKFAQLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE----- 137 ::::::::::::: :::::::::::::::: d1tq1a_ 84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKN------------------------GLPTK 118 TMalign alignment (TM-score: 0.46 Raw score:62.97) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHI-PTAI 53 ::::::::::::::::: :::::::::::::::: :::: d1tq1a_ 1 AEESRV-------------PSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAIN 44 query 54 SIPG--------NKINEDT-TK---R-LSKEKVIITYCWGPACNGATKAAAKFAQ-LGFR 99 :::: :::::: :: : ::: ::::::: :: :::::::::: :: :::: d1tq1a_ 45 VPYMNRGASGMS-KNTDFLEQVSSHFGQSD-NIIVGCQ-SG-GRSIKATTDL-LHAGFTG 99 query 100 VKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE 137 ::::::::::::: :::::: d1tq1a_ 100 VKDIVGGYSAWAK-NGLPTK------------------ 118 HHsearch alignment (Probability: 1.00 E-value:0.00) query 10 MKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN----------- 58 ::::::::::::::::::::: ::::::::::::::::::::::::: d1tq1a_ 3 ESRVPSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNT 59 query 59 KINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEV 117 :::::::::::::::::::::::: ::::::::::::::: :::::::::::::::::: d1tq1a_ 60 DFLEQVSSHFGQSDNIIVGCQSGG--RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT 117 query 118 E 118 : d1tq1a_ 118 K 118
Intermediate <-- 0.961 --> HitDALI alignment (Z-score: 0.9 Raw score:161.80) d1tq1a_ 1 ------------aEESRVPSS-------------vsvTVAHDLLLAGHRYLDVRT----- 30 :::::::: :::::::::::::::::: d1fpza_ 1 tpihiswlslsrvNCSQFLGLcalpgckfkdvrrnvqKDTEELKSCGIQDIFVFCtrgel 60 d1tq1a_ 31 -----peefsqgHACGAINVPymnrgasgmskntdfleqvsshfGQSD---NIIVGCQS- 81 ::::::::: :::: :::::::: d1fpza_ 61 skyrvpnlldlyQQCGIITHH--hpiadggtpdiascceimeelTTCLknyRKTLIHSYg 118 d1tq1a_ 82 GGRSIKATTDLLHAG---------------------ftgvkdivggysawaknglptk 118 ::::::::::::::: d1fpza_ 119 GLGRSCLVAACLLLYlsdtispeqaidslrdlrgsgaiqtikqynylhefrdklaahl 176 FAST alignment (Normalized score: 0.87 Raw score:126.10) d1tq1a_ 1 AEE---------------SRVPSSVSV---------------TVAHDLLLAGH--RYLDV 28 ::::::: :::::::::: ::::: d1fpza_ 1 ---TPIHISWLSLSRVNCSQFLGLC--ALPGCKFKDVRRNVQKDTEELKSCG-IQDIFVF 54 d1tq1a_ 29 RTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQS------- 81 ::::::: d1fpza_ 55 CTRGELS----------------------------------------------KYRVPNL 68 d1tq1a_ 82 -------------------------GGRSI-KATTDLLHAGFT-GVKDIVGGYSAWAKNG 114 ::::: :::::::::: :::: d1fpza_ 69 LDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNY--RKTLI------------ 114 d1tq1a_ 115 LPTK-------------------------------------------------------- 118 d1fpza_ 115 ----HSYGGLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRD 170 d1tq1a_ 119 ------ 119 d1fpza_ 171 KLAAHL 176 TMalign alignment (TM-score: 0.40 Raw score:46.91) d1tq1a_ 1 ----------A---EESRVPSSVS-V------------TVAHDLLL-AGHRYLDVRTPE- 32 : ::: :::::: : :::::::: :::::::::::: d1fpza_ 1 TPIHISWLSLSRVNCSQ-FLGLCALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGE 59 d1tq1a_ 33 E------FSQGHA---CG-A-INVPYM--------NRGASGMSKNTDFLEQVSSHFGQSD 73 : :::: :: : :::::: ::::::: :: ::::: d1fpza_ 60 LSKYRVP--NLLDLYQQCGIITHHHPIADGGTPDI--------ASCCEIM-EE--LTTCL 106 d1tq1a_ 74 ---N-IIVGCQSGGRSIKATTDLLHAGF-T------------------------------ 98 : ::::: :: ::::::::::::: : d1fpza_ 107 KNYRKTLIHS-YG--GLGRSCLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYN 163 d1tq1a_ 99 -------------GVKDIVGGYSAWAKNGLPTK 118 d1fpza_ 164 YLHEFRDKLAAHL-------------------- 176 HHsearch alignment (Probability: 0.96 E-value:0.00) d1tq1a_ 12 VTVAHDLLLAG-HRYLDVRTPEEFSQGHACG-----------AINVPYMNRGASGMSKNT 59 ::::::::::: ::::::::::::::::::: :::::::::::::::::: d1fpza_ 37 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC 96 d1tq1a_ 60 DFLEQVSSHFGQSDNIIVGCQSGG-RSIKAT-TDLLHAG 96 :::::::::::::::::::::::: :::::: ::::::: d1fpza_ 97 EIMEELTTCLKNYRKTLIHSYGGLGRSCLVAACLLLYLS 135