HorA Server Transitive Detail

Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets. J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu


Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL


Query <-- 0.999 --> Intermediate <-- 0.999 --> Hit

HHsearch
probability
HHsearch
probability

The query (T592_B.pdb B) is transitively linked to the hit (d1e0ca2) through the intermediate protein (d1tq1a_) by significant HHsearch probability (>0.9).

  SCOP Id Protein SCOP Superfamily SCOP Fold SCOP
Class
Intermediate d1tq1a_ Thiosulfate sulfurtransferase/​Senescence-​associated proteinRhodanese/​Cell cycle control phosphataseRhodanese/​Cell cycle control phosphataseα/β
Hit d1e0ca2 SulfurtransferaseRhodanese/​Cell cycle control phosphataseRhodanese/​Cell cycle control phosphataseα/β

Supporting Alignments

Query <-- 0.999 --> Intermediate
DALI alignment (Z-score: 3.7 Raw score:298.10) query 1 npneayrhymkklsYETDIADLSIDIKKGYegiIVVDVRDAEAYKECHI-PTAISIP--g 57 :::::::::::::::: :::::::::::::::: ::::::: d1tq1a_ 1 -------aeesrvpSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHAcGAINVPYmnr 50 query 58 nkineDTTK--------rlskeKVIITYCWGpacngaTKAAAKFAQLGFR-VKELIGGIE 108 :::: ::::::::: ::::::::::::: ::::::::: d1tq1a_ 51 gasgmSKNTdfleqvsshfgqsDNIIVGCQS--ggrsIKATTDLLHAGFTgVKDIVGGYS 108 query 109 YWRKeNGEVEGtlgakadlfwnmkkesle 137 :::: :::::: d1tq1a_ 109 AWAK-NGLPTK------------------ 118 FAST alignment (Normalized score: 4.04 Raw score:514.40) query 1 NPNEAYRHYMKKLS-------YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAI 53 ::::::::::::::: ::::::::::::::::::::: d1tq1a_ 1 --------------AEESRVPSSVSVTVAHDLLLAG---HRYLDVRTPEEFSQGHACGAI 43 query 54 SIPGNKINEDTTKRLSKEK---------------------------VIITYCWGPACN-- 84 ::: :::::::: d1tq1a_ 44 NVP----------------YMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQS----GG 83 query 85 GATKAAAKFAQLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE----- 137 ::::::::::::: :::::::::::::::: d1tq1a_ 84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKN------------------------GLPTK 118 TMalign alignment (TM-score: 0.46 Raw score:62.97) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHI-PTAI 53 ::::::::::::::::: :::::::::::::::: :::: d1tq1a_ 1 AEESRV-------------PSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAIN 44 query 54 SIPG--------NKINEDT-TK---R-LSKEKVIITYCWGPACNGATKAAAKFAQ-LGFR 99 :::: :::::: :: : ::: ::::::: :: :::::::::: :: :::: d1tq1a_ 45 VPYMNRGASGMS-KNTDFLEQVSSHFGQSD-NIIVGCQ-SG-GRSIKATTDL-LHAGFTG 99 query 100 VKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE 137 ::::::::::::: :::::: d1tq1a_ 100 VKDIVGGYSAWAK-NGLPTK------------------ 118 HHsearch alignment (Probability: 1.00 E-value:0.00) query 10 MKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN----------- 58 ::::::::::::::::::::: ::::::::::::::::::::::::: d1tq1a_ 3 ESRVPSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNT 59 query 59 KINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEV 117 :::::::::::::::::::::::: ::::::::::::::: :::::::::::::::::: d1tq1a_ 60 DFLEQVSSHFGQSDNIIVGCQSGG--RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT 117 query 118 E 118 : d1tq1a_ 118 K 118
Intermediate <-- 0.999 --> Hit
DALI alignment (Z-score: 3.6 Raw score:305.60) d1tq1a_ 1 ----aeesrvpSSVSVTVAHDLLLAG-HRYLDVRTPEEFSQ--------GHACgAINVPY 47 ::::::::::::::: :::::::::::::: :::: :::::: d1e0ca2 1 ggpvalslhdePTASRDYLLGRLGAAdLAIWDARSPQEYRGekvlaakgGHIP-GAVNFE 59 d1tq1a_ 48 mnrgasgmsKNTD------fLEQVSS-----hfgqsDNIIVGCQSGGrsIKATTDLLHAG 96 :::: :::::: ::::::::::: ::::::::::: d1e0ca2 60 -------wtAAMDpsralriRTDIAGrleelgitpdKEIVTHCQTHHrsGLTYLIAKALG 112 d1tq1a_ 97 FTGVKDIVGGYSAWAKN--gLPTK 118 ::::::::::::::::: :::: d1e0ca2 113 YPRVKGYAGSWGEWGNHpdtPVEL 136 FAST alignment (Normalized score: 3.74 Raw score:473.90) d1tq1a_ 1 AEESRVP-----------SSVSVTVAHDLLLA---GHRYLDVRTPEEFS---------QG 37 :::::::::::: ::::::::::::: :: d1e0ca2 1 -------GGPVALSLHDEPTASRDYLLGRL--GAADLAIWDARSPQEY-RGEKVLAAKGG 50 d1tq1a_ 38 HACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQS------------------------- 72 ::::::::: d1e0ca2 51 HIPGAVNFE--------------------------WTAAMDPSRALRIRTDIAGRLEELG 84 d1tq1a_ 73 ----DNIIVGCQSGGRSIKATTDLLHAGFT--GVKDIVGGYSAWAKN----GLPTK- 118 :::::::::::::::::::::::: ::::::::::::: :::: d1e0ca2 85 ITPDKEIVTHCQTHHRSGLTYLIAKALG--YPRVKGYAGSWGEWG--NHPDTPVE-L 136 TMalign alignment (TM-score: 0.50 Raw score:58.48) d1tq1a_ 1 ----------AEESRVPSSVSVTVAHDLLLAGH----RYL-DVRTPEEFSQG-------H 38 ::: :::::::::: ::: ::::::::::: : d1e0ca2 1 GGPVALSLHD-------EPT---ASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGG 50 d1tq1a_ 39 ACGAINVPYM-N----------RGASGMSKNTDFLEQVS--SHFGQS--DNIIVGCQSGG 83 :::::::::: : ::::::::: ::: ::::::::::: d1e0ca2 51 HIPGAVNFEWTAAMDPSRALRI--------RTDIAGRLEEL---GITPDKEIVTHCQTHH 99 d1tq1a_ 84 RSIKA-TTDL-LHAGFT-GVKDIVGGYSAWAKNG--LPTK 118 ::: : :: : :: ::: :::::::::::::::: :::: d1e0ca2 100 RSG-LTYL-IAKA-LGYPRVKGYAGSWGEWGNHPDTPVEL 136 HHsearch alignment (Probability: 1.00 E-value:0.00) d1tq1a_ 8 SSVSVTVAHDLLLAG-HRYLDVRTPEEFS--------QGHACGAINVPYMNRGASGMS-K 57 ::::::::::::::: ::::::::::::: ::::::::::::::::::::: : d1e0ca2 12 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALR 71 d1tq1a_ 58 NTDFLE--QVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAK-NG 114 :::::: ::::::::::::::::::::::::::::::::::::::::::::::::: :: d1e0ca2 72 IRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPD 131 d1tq1a_ 115 LPTK 118 :::: d1e0ca2 132 TPVE 135