Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tq1a_ | Thiosulfate sulfurtransferase/Senescence-associated protein | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1urha1 | 3-mercaptopyruvate sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
Query <-- 0.999 --> IntermediateDALI alignment (Z-score: 3.7 Raw score:298.10) query 1 npneayrhymkklsYETDIADLSIDIKKGYegiIVVDVRDAEAYKECHI-PTAISIP--g 57 :::::::::::::::: :::::::::::::::: ::::::: d1tq1a_ 1 -------aeesrvpSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHAcGAINVPYmnr 50 query 58 nkineDTTK--------rlskeKVIITYCWGpacngaTKAAAKFAQLGFR-VKELIGGIE 108 :::: ::::::::: ::::::::::::: ::::::::: d1tq1a_ 51 gasgmSKNTdfleqvsshfgqsDNIIVGCQS--ggrsIKATTDLLHAGFTgVKDIVGGYS 108 query 109 YWRKeNGEVEGtlgakadlfwnmkkesle 137 :::: :::::: d1tq1a_ 109 AWAK-NGLPTK------------------ 118 FAST alignment (Normalized score: 4.04 Raw score:514.40) query 1 NPNEAYRHYMKKLS-------YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAI 53 ::::::::::::::: ::::::::::::::::::::: d1tq1a_ 1 --------------AEESRVPSSVSVTVAHDLLLAG---HRYLDVRTPEEFSQGHACGAI 43 query 54 SIPGNKINEDTTKRLSKEK---------------------------VIITYCWGPACN-- 84 ::: :::::::: d1tq1a_ 44 NVP----------------YMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQS----GG 83 query 85 GATKAAAKFAQLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE----- 137 ::::::::::::: :::::::::::::::: d1tq1a_ 84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKN------------------------GLPTK 118 TMalign alignment (TM-score: 0.46 Raw score:62.97) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHI-PTAI 53 ::::::::::::::::: :::::::::::::::: :::: d1tq1a_ 1 AEESRV-------------PSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAIN 44 query 54 SIPG--------NKINEDT-TK---R-LSKEKVIITYCWGPACNGATKAAAKFAQ-LGFR 99 :::: :::::: :: : ::: ::::::: :: :::::::::: :: :::: d1tq1a_ 45 VPYMNRGASGMS-KNTDFLEQVSSHFGQSD-NIIVGCQ-SG-GRSIKATTDL-LHAGFTG 99 query 100 VKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE 137 ::::::::::::: :::::: d1tq1a_ 100 VKDIVGGYSAWAK-NGLPTK------------------ 118 HHsearch alignment (Probability: 1.00 E-value:0.00) query 10 MKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN----------- 58 ::::::::::::::::::::: ::::::::::::::::::::::::: d1tq1a_ 3 ESRVPSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNT 59 query 59 KINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEV 117 :::::::::::::::::::::::: ::::::::::::::: :::::::::::::::::: d1tq1a_ 60 DFLEQVSSHFGQSDNIIVGCQSGG--RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT 117 query 118 E 118 : d1tq1a_ 118 K 118
Intermediate <-- 0.999 --> HitDALI alignment (Z-score: 3.8 Raw score:293.70) d1tq1a_ 1 aeesrvpSSVSVTVAHDLLLAG-HRYLDVRT----------PEEFsQGHAcGAINVPYMn 49 ::::::::::::::: :::::::: :::: :::: :::::::: d1urha1 1 -----ttWFVGADWLAEHIDDPeIQIIDARMaspgqedrnvAQEY-LNGHiPGAVFFDI- 53 d1tq1a_ 50 rgasgmsKNTD----------fLEQVSS-----hfgqsDNIIVGCQS-ggrsIKATTDLL 93 :::: :::::: ::::::::: :::::::: d1urha1 54 ------eALSDhtsplphmlprPETFAVamrelgvnqdKHLIVYDEGnlfsaPRAWWMLR 107 d1tq1a_ 94 HAGFTGVKDIVGGYSAWAK-NGLPTK-------------- 118 ::::::::::::::::::: :::::: d1urha1 108 TFGVEKVSILGGGLAGWQRdDLLLEEgavelpegefnaaf 147 FAST alignment (Normalized score: 3.29 Raw score:433.70) d1tq1a_ 1 AEESRVP--SSVSVTVAHDLLLAG--HRYLDVRTP----------EEFSQ----GHACGA 42 :::::::::::::: :::::: :::: :::::: d1urha1 1 -------TTWFVGADWLAEHIDD-PEIQIIDA---RMASPGQEDRNVAQ-EYLNGHIPGA 48 d1tq1a_ 43 INVPYMNRGASGMSKNTD-------------------FLEQVSSHFGQS----------D 73 :::: :::: : d1urha1 49 VFFD--------------IEALSDHTSPLPHMLPRPETFAV--------AMRELGVNQDK 86 d1tq1a_ 74 NIIVGCQSG---GRSIK-ATTDLLHAGFT--GVKDIVGGYSAWAKNGLPTK--------- 118 :::::: ::::: ::::::::: ::::::::::::::: d1urha1 87 HLIVYD---EGNLFSAPRAWWMLRTFG--VEKVSILGGGLAGWQRD-----DLLLEEGAV 136 d1tq1a_ 119 ----------- 119 d1urha1 137 ELPEGEFNAAF 147 TMalign alignment (TM-score: 0.52 Raw score:61.73) d1tq1a_ 1 -AEESRVPSSVSVT-VAHDLLLAG-HRYLDVRTP-------EEFSQ-G-HACGAINVPYM 48 :::::: ::::::::: ::::::::: ::::: : ::::::::::: d1urha1 1 T-------TWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDI 53 d1tq1a_ 49 NRGASGMSKNTD---------FLEQVSSHFGQ----S-D-NIIVGCQ---SGGRSIKA-T 89 : :::: ::::::: ::: : : ::::::: :: ::: : : d1urha1 54 E-------ALSDHTSPLPHMLPRPETFA-VAMRELGVNQDKHLIVYDEGNLF-SAP-RAW 103 d1tq1a_ 90 TDL-LHAGFTGVKDIV-GGYSAWAK--NGLPTK------------- 118 : : :: ::::::::: :::::::: :::::: d1urha1 104 W-MLRT-FGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAF 147 HHsearch alignment (Probability: 1.00 E-value:0.00) d1tq1a_ 9 SVSVTVAHDLLL-AGHRYLDVRT----------PEEFSQGHACGAINVPYMNRGASG--- 54 :::::::::::: :::::::::: :::::::::::::::::::::::: d1urha1 4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPL 63 d1tq1a_ 55 --MSKNTDFLEQVS--SHFGQSDNIIVGCQSGG-RSIKATTDLLHAGFTGVKDIVGGYSA 109 :::::::::::: ::::::::::::::::: :::::::::::::::::::::::::: d1urha1 64 PHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 123 d1tq1a_ 110 WAKNGLPTK 118 ::::::::: d1urha1 124 WQRDDLLLE 132