Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tq1a_ | Thiosulfate sulfurtransferase/Senescence-associated protein | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1uara1 | Sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
Query <-- 0.999 --> IntermediateDALI alignment (Z-score: 3.7 Raw score:298.10) query 1 npneayrhymkklsYETDIADLSIDIKKGYegiIVVDVRDAEAYKECHI-PTAISIP--g 57 :::::::::::::::: :::::::::::::::: ::::::: d1tq1a_ 1 -------aeesrvpSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHAcGAINVPYmnr 50 query 58 nkineDTTK--------rlskeKVIITYCWGpacngaTKAAAKFAQLGFR-VKELIGGIE 108 :::: ::::::::: ::::::::::::: ::::::::: d1tq1a_ 51 gasgmSKNTdfleqvsshfgqsDNIIVGCQS--ggrsIKATTDLLHAGFTgVKDIVGGYS 108 query 109 YWRKeNGEVEGtlgakadlfwnmkkesle 137 :::: :::::: d1tq1a_ 109 AWAK-NGLPTK------------------ 118 FAST alignment (Normalized score: 4.04 Raw score:514.40) query 1 NPNEAYRHYMKKLS-------YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAI 53 ::::::::::::::: ::::::::::::::::::::: d1tq1a_ 1 --------------AEESRVPSSVSVTVAHDLLLAG---HRYLDVRTPEEFSQGHACGAI 43 query 54 SIPGNKINEDTTKRLSKEK---------------------------VIITYCWGPACN-- 84 ::: :::::::: d1tq1a_ 44 NVP----------------YMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQS----GG 83 query 85 GATKAAAKFAQLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE----- 137 ::::::::::::: :::::::::::::::: d1tq1a_ 84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKN------------------------GLPTK 118 TMalign alignment (TM-score: 0.46 Raw score:62.97) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHI-PTAI 53 ::::::::::::::::: :::::::::::::::: :::: d1tq1a_ 1 AEESRV-------------PSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAIN 44 query 54 SIPG--------NKINEDT-TK---R-LSKEKVIITYCWGPACNGATKAAAKFAQ-LGFR 99 :::: :::::: :: : ::: ::::::: :: :::::::::: :: :::: d1tq1a_ 45 VPYMNRGASGMS-KNTDFLEQVSSHFGQSD-NIIVGCQ-SG-GRSIKATTDL-LHAGFTG 99 query 100 VKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE 137 ::::::::::::: :::::: d1tq1a_ 100 VKDIVGGYSAWAK-NGLPTK------------------ 118 HHsearch alignment (Probability: 1.00 E-value:0.00) query 10 MKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN----------- 58 ::::::::::::::::::::: ::::::::::::::::::::::::: d1tq1a_ 3 ESRVPSSVSVTVAHDLLLAGH---RYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNT 59 query 59 KINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEV 117 :::::::::::::::::::::::: ::::::::::::::: :::::::::::::::::: d1tq1a_ 60 DFLEQVSSHFGQSDNIIVGCQSGG--RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPT 117 query 118 E 118 : d1tq1a_ 118 K 118
Intermediate <-- 0.999 --> HitDALI alignment (Z-score: 4.4 Raw score:351.40) d1tq1a_ 1 aeesrvpSSVSVTVAHDLLLAG-HRYLDVR-TPEEFsQGHAcGAINVPYMnrgasgmSKN 58 ::::::::::::::: ::::::: ::::: :::: :::::::: ::: d1uara1 1 -gyahpeVLVSTDWVQEHLEDPkVRVLEVDeDILLY-DTGHiPGAQKIDW------qRDF 52 d1tq1a_ 59 TD------FLEQVSSH------fgqsDNIIVGCQS-ggrsIKATTDLLHAGFTGVKDIVG 105 :: :::::::: ::::::::: :::::::::::::::::::: d1uara1 53 WDpvvrdfISEEEFAKlmerlgisndTTVVLYGDKnnwwaAYAFWFFKYNGHKDVRLMNG 112 d1tq1a_ 106 GYSAWAK-NGLPTK----------------- 118 ::::::: :::::: d1uara1 113 GRQKWVEeGRPLTTevpsyppgryevpyrde 143 FAST alignment (Normalized score: 3.38 Raw score:439.30) d1tq1a_ 1 AEESRVP------SSVSVTVAHDLLLAG--HRYLDV-RTPEEFSQGHACGAINVPYMNRG 51 :::::::::::::: :::::: ::::::::::::::::::: d1uara1 1 -------GYAHPEVLVSTDWVQEHLED-PKVRVLEVDEDILLYDTGHIPGAQKIDW---- 48 d1tq1a_ 52 ASGMSKNT---------------DFLEQVSSHFGQS---------DNIIVGCQSGGRSIK 87 :::::: :::::::: d1uara1 49 --------QRDFWDPVVRDFISEEEFAKL-------MERLGISNDTTVVLYGD------- 86 d1tq1a_ 88 A---------TTDLLHAGFTGVKDIVGGYSAWAKNGLPTK-------------------- 118 ::::::::::::::::::::::::: d1uara1 87 -KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEE-----GRPLTTEVPSYPPGRYEVPY 140 d1tq1a_ 119 --- 119 d1uara1 141 RDE 143 TMalign alignment (TM-score: 0.53 Raw score:62.21) d1tq1a_ 1 -----AEESRVPSSVSVTVAHDLLLAG-HRYLDVR-TPEEFSQGHACGAINVPYMNRGAS 53 :::::::::::::::: ::::::: ::::: ::::::::::::::: d1uara1 1 GYAHP------EVLVSTDWVQEHLEDPKVRVLEVDEDILLY-DTGHIPGAQKIDWQR--- 50 d1tq1a_ 54 GMSKNTD------FLEQVSSHF-GQ----SD--NIIVGCQ--SGGRSIKATTDLLHAGFT 98 :::: :::::: : :: :: ::::::: :: ::::::::::::::: d1uara1 51 ---DFWDPVVRDFISEEEF--AKLMERLGISNDTTVVLYGDKNN-WWAAYAFWFFKYNGH 104 d1tq1a_ 99 -GVKDIV-GGYSAWA-K-NGLPTK--------------- 118 :::::: ::::::: : :::::: d1uara1 105 KDVRLMNGGRQKWVEEGRPLTTEVPSYPPGRYEVPYRDE 143 HHsearch alignment (Probability: 1.00 E-value:0.00) d1tq1a_ 8 SSVSVTVAHDLLLA-GHRYLDVRT-PEEFSQGHACGAINVPYMNRGASG---MSKNTDFL 62 :::::::::::::: ::::::::: :::::::::::::::::::::::: :::::::: d1uara1 7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEF 66 d1tq1a_ 63 EQVSS--HFGQSDNIIVGCQSGGR-SIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 118 ::::: ::::::::::::::::: :::::::::::::::::::::::::::::::::: d1uara1 67 AKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT 125