Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qxna_ | Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1gmxa_ | Sulfurtransferase GlpE | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
Query <-- 0.999 --> IntermediateDALI alignment (Z-score: 10.4 Raw score:602.30) query 1 ------NPNEAYRHYMKKLS--YETDIADLSIDIKkGYEGIIVVDVRDAEAYK-ECHIPT 51 :::::::::::::: ::::::::::::: ::::::::::::::::: :::::: d1qxna_ 1 admgekFDATFKAQVKAAKAdmVMLSPKDAYKLLQ-ENPDITLIDVRDPDELKaMGKPDV 59 query 52 --AISIPgNKINeDTTK--RLSKEKVIITYCwgpaCNGATKAAAKFAQLGF-RVKELIGG 106 ::::: :::: :::: :::::::::::: :::::::::::::::: :::::::: d1qxna_ 60 knYKHMSrGKLE-PLLAksGLDPEKPVVVFC--ktAARAALAGKTLREYGFkTIYNSEGG 116 query 107 IEYWRKENGEVEGTLgakadlfwnmkkesle 137 ::::::::::::::: d1qxna_ 117 MDKWLEEGLPSLDRS----------hhhhhh 137 FAST alignment (Normalized score: 8.73 Raw score:1196.00) query 1 N----PNEAYRHYMKKLS-----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKE-CHI- 49 ::::::::::::: ::::::::::::: :::::::::::::::::: ::: d1qxna_ 1 -ADMGEKFDATFKAQVKAAKADMVMLSPKDAYKLLQ-ENPDITLIDVRDPDELKAMGKPD 58 query 50 -PTAISIPGNKIN-----EDTTK--RLSKEKVIITYCW--GPACNGATKAAAKFAQLGF- 98 :::::: ::::: :::::::::: :::: :::::::::::::: d1qxna_ 59 VKNYKHM------SRGKLEPLLAKSGLDPEKPVVV---FCKTAA-RAALAGKTLREYGFK 108 query 99 RVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::::::::::::::::::::: d1qxna_ 109 TIYNSEGGMDKWLEEGLPSLD------------------RSHHHHHH 137 TMalign alignment (TM-score: 0.61 Raw score:83.41) query 1 -------------------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDA 41 ::::::::::::::::: :::::::::::: d1qxna_ 1 ADMGEKFDATFKAQVKAAK-----------ADMVMLSPKDAYKLLQE-NPDITLIDVRDP 48 query 42 EAYKE-CHIPT--AISIPGNKINEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 ::::: ::::: :::::::::: :::: :::::::::::: : ::::::::::::::: d1qxna_ 49 DELKAMGKPDVKNYKHMSRGKLE-PLLAKSGLDPEKPVVVFC-K-TAARAALAGKTLREY 105 query 97 GFR-VKELIGGIEYWRKENGEVEGTLGAK----ADLFWNMKKESLE 137 ::: :::::::::::::::::::: :::: d1qxna_ 106 GFKTIYNSEGGMDKWLEEGLPSLD-RSHHHHHH------------- 137 HHsearch alignment (Probability: 1.00 E-value:0.00) query 16 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKE---CHIPTAISIPGNKINEDTTKR--LSK 70 :::::::::::::: :::::::::::::::: :::::::::::::: :::::: ::: d1qxna_ 24 MLSPKDAYKLLQEN-PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKL-EPLLAKSGLDP 81 query 71 EKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTL 121 :::::::::::: ::::::::::::::: :::::::::::::::::::::: d1qxna_ 82 EKPVVVFCKTAA--RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131
Intermediate <-- 0.999 --> HitDALI alignment (Z-score: 13.5 Raw score:682.00) d1qxna_ 1 admgekfdatfkaqvkaakaDMVMLSPKDAYKLLQENpDITLIDVRDPDELKaMGKPDVk 60 ::::::::::::::::: :::::::::::::: :::::: d1gmxa_ 1 ------------------mdQFECINVADAHQKLQEK-EAVLVDIRDPQSFA-MGHAVQ- 39 d1qxna_ 61 nYKHMSrgklEPLLAKS--GLDPEKPVVVFCktaARAALAGKTLREYGFKTIYNSEGGMD 118 ::::: ::::::: :::::::::::: :::::::::::::::::::::::::: d1gmxa_ 40 -AFHLT----NDTLGAFmrDNDFDTPVMVMCyhgNSSKGAAQYLLQQGYDVVYSIDGGFE 94 d1qxna_ 119 KWLEEGL-PSLDRshhhhhh 137 ::::::: ::::: d1gmxa_ 95 AWQRQFPaEVAYG------a 108 FAST alignment (Normalized score: 10.84 Raw score:1318.00) d1qxna_ 1 ADMGEKFDATFKAQVKAAKA--DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPD 58 ::::::::::::::: :::::::::::::::: :::: d1gmxa_ 1 --------------------MDQFECINVADAHQKLQ-EKEAVLVDIRDPQSFA-MGHA- 37 d1qxna_ 59 VKNYKHMSRGKLEPLLAKS---GLDPEKPVVVFCKTA-----ARAALAGKTLREYGFKTI 110 :::::: ::::::: :::::::::: :::::::::::::::::: d1gmxa_ 38 -VQAFHL----TNDTLGA-FMRDNDFDTPVMV-----MCYHGNSSKGAAQYLLQQGYDVV 86 d1qxna_ 111 YNSEGGMDKWLEEGLPSLDRSHHHHHH---------- 137 :::::::::::: d1gmxa_ 87 YSIDGGFEAWQR---------------QFPAEVAYGA 108 TMalign alignment (TM-score: 0.63 Raw score:86.88) d1qxna_ 1 --ADMGEKFDATFKAQVKAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPD 58 ::::::::::::::::: ::::::::::::::: :::: d1gmxa_ 1 MD--------------------QFECINVADAHQKLQEK-EAVLVDIRDPQSFAM-GHAV 38 d1qxna_ 59 VKNYKHMSRGKLEPLLAKS--GLDPEKPVVVFC--KTAARAALAGKTLREYGFKTIYNSE 114 : ::::: : :::::: :::::::::::: :: ::::::::::::::::::::: d1gmxa_ 39 Q--AFHLT---N-DTLGAFMRDNDFDTPVMVMCYHGN--SSKGAAQYLLQQGYDVVYSID 90 d1qxna_ 115 GGMDKWLEEGL-PSLDR-SHHHHHH 137 ::::::::::: ::::: d1gmxa_ 91 GGFEAWQRQFPAEVAYGA------- 108 HHsearch alignment (Probability: 1.00 E-value:0.00) d1qxna_ 19 KADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSG 78 ::::::::::::::::::: ::::::::::::::: :::::::::::::::::::: d1gmxa_ 1 MDQFECINVADAHQKLQEK-EAVLVDIRDPQSFAM---GHAVQAFHLTNDTLGAFMRD-- 54 d1qxna_ 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR 130 ::::::::::::::::::::::::::::::::::::::::::::: :::::: d1gmxa_ 55 NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVA 105