Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1t6t1_ | Hypothetical protein aq 2086 | Toprim domain (Pfam 01751) | Toprim domain (Pfam 01751) | α/β |
| Hit | d1lyva_ | Protein-tyrosine phosphatase YopH, catalytic domain | (Phosphotyrosine protein) phosphatases II | (Phosphotyrosine protein) phosphatases II | α/β |
Query <-- 0.610 --> IntermediateDALI alignment (Z-score: 4.8 Raw score:306.10) query 1 npneayrhymkklsyetDIADLSIDikkgyEGIIVVDvRDAEaYKECH----IPTAISIP 56 :::::::: ::::::: :::: ::::: :::::::: d1t6t1_ 1 -----------prnlseWIKELKKA----sREAVILV-EGKN-DKKALskfsIKNVIDLS 43 query 57 gnKINEdTTKRLSKEK-VIITYCWGPA--CNGATKAAAKFAQLGFRVKE------liggi 107 :::: ::::::::: :::::::::: :::::::::::::::::::: d1t6t1_ 44 gkRYAD-VVDMLEGKWeKVILLFDLDThgERINQKMKELLSSQGFLVDEnfrnflkkwni 102 query 108 EYWRkengevegtlgakadlfwnmkkesle 137 :::: d1t6t1_ 103 IHIE------------------------ei 108 FAST alignment (Normalized score: 4.56 Raw score:554.40) query 1 NPNEAYRHYMKKLSYET------DIADLSIDIKKGYEGIIVVDVRDAEAYKECH------ 48 ::::::::: ::::::: ::::::: d1t6t1_ 1 -----------------PRNLSEWIKELKKAS----REAVILV-EGKNDKK---ALSKFS 35 query 49 IPTAISIPGNKI-----NEDTTKRLSKE--KVIITYCWGPA---CNGATKAAAKFAQLGF 98 :::::: ::::::: ::: :::::::::: :::::::::::::::: d1t6t1_ 36 IKNVID------LSGKRYADVVDM-LEGKWEKVILLFDLD-THGERINQKMKELLSSQGF 87 query 99 RVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE------------------ 137 ::: d1t6t1_ 88 LVD------------------------------------ENFRNFLKKWNIIHIEEI 108 TMalign alignment (TM-score: 0.48 Raw score:65.09) query 1 --NPNEAYRHYMKKLSYETDIA-DLS-IDIKKGYEGIIVVDVRDAEAYKECHI--P---- 50 :: ::: ::: :::::::::: : :: ::: : d1t6t1_ 1 PR------------------NLSEWIKELK-KASREAVILV-E----GK-NDKKALSKFS 35 query 51 -T-AISIPGNKINEDTTKRL--SKEKVIITYCWGPA--CNGATKAAAKFAQLGFRVKE-- 102 : :::::::::: :::::: ::: :::::::::: :::::::::::::::::::: d1t6t1_ 36 IKNVIDLSGKRYA-DVVDMLEGKWE-KVILLFDLDTHGERINQKMKELLSSQGFLVDENF 93 query 103 LI-GG---IEYWRKENGEVEGTLGAKADLFWNMKKESLE 137 :: :: :::::: : d1t6t1_ 94 RNFLKKWNIIHIEE--I---------------------- 108 HHsearch alignment (Probability: 0.05 E-value:0.04) query 49 IPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAA----KFAQLGFRV 100 ::::::::::::::::::::::::::::::::: :::::::: ::::::::: d1t6t1_ 36 IKNVIDLSGKRYADVVDMLEGKWEKVILLFDLD--THGERINQKMKELLSSQGFLV 89
Intermediate <-- 0.861 --> HitDALI alignment (Z-score: 2.4 Raw score:311.90) d1t6t1_ 1 ------------------------------------------------------------ 1 d1lyva_ 1 vspygpearaelssrlttlrntlapatndprylqacggeklnrfrdiqcrrqtavradln 60 d1t6t1_ 1 ------------------pRNLSEWIKELKKAsREAVILVEGKN---------dkKALSK 33 ::::::::::::: ::::::::::: ::::: d1lyva_ 61 anyiqvgntrtiacqyplqSQLESHFRMLAEN-RTPVLAVLASSseianqrfgmpDYFRQ 119 d1t6t1_ 34 F--------------------------------------sikNVIDLSG---------kR 46 : ::::::: : d1lyva_ 120 SgtygsitveskmtqqvglgdgimadmytltireagqktisvPVVHVGNwpdqtavsseV 179 d1t6t1_ 47 YADVVDMLEGKWE--------------------KVILLFDLdthGERINQKMKELLSSQG 86 ::::::::::::: :::::::: :::::::::::::::: d1lyva_ 180 TKALASLVDQTAEtkrnmyeskgssavaddsklRPVIHSRA---GVGRTAQLIGAMCMND 236 d1t6t1_ 87 -------------------------flvdenfrnflkkwniihieei 108 d1lyva_ 237 srnsqlsvedmvsqmrvqrngimvqkdeqldvliklaegqgrpllns 283 FAST alignment (Normalized score: 1.39 Raw score:242.90) d1t6t1_ 1 PRN--------------------------------------------------------- 3 d1lyva_ 1 ---VSPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA 57 d1t6t1_ 4 --------------------LSEWIKELKKASREA----VILV-EGKNDKKALSKFSIKN 38 :::::::::::::: :::: :::::: d1lyva_ 58 DLNANYIQVGNTRTIACQYPLQSQLESHFRMLAE-NRTPVLAVLASSSEI---------- 106 d1t6t1_ 39 VIDLSGKRYADVVDMLEGKW---------------------------------------- 58 d1lyva_ 107 --------------------ANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADM 146 d1t6t1_ 59 -------------EKVILLFD---------LDTHGERINQKMKELLSSQG---------- 86 :::::: :::::::::::::::::: d1lyva_ 147 YTLTIREAGQKTISVPVVH--VGNWPDQTAVSSEVTKALASLVDQTAE--TKRNMYESKG 202 d1t6t1_ 87 ---------FLVDENFRNFLKKWNIIHIEEI----------------------------- 108 :::: d1lyva_ 203 SSAVADDSKLRPV------------------IHSRAGVGRTAQLIGAMCMNDSRNSQLSV 244 d1t6t1_ 109 --------------------------------------- 109 d1lyva_ 245 EDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQGRPLLNS 283 TMalign alignment (TM-score: 0.47 Raw score:51.20) d1t6t1_ 1 ---------------------------------------------------------PRN 3 ::: d1lyva_ 1 VSPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRADLN 60 d1t6t1_ 4 -----------------L-SEWIKELKKASRE-AV--ILVEGKN--D-------KKALS- 32 : : ::::::::::: :: ::::::: : :::: d1lyva_ 61 ANYIQVGNTRTIACQYPLQS-QLESHFRMLAENRTPVLAVLASSSEIANQRFGM-PDYFR 118 d1t6t1_ 33 K-F------SI-------------------K-----------NVIDLS------------ 43 : : :: : :::::: d1lyva_ 119 QSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSE 178 d1t6t1_ 44 ---GKRY--ADVVDMLEG-K-------W-----EKVILLFD-LDTHGERINQKMKELLSS 84 :::: ::::::::: : : :::::::: :::::::::::: ::: : d1lyva_ 179 VTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQLIGAM-CMN-D 236 d1t6t1_ 85 QG------------FLVDE---NFRNF-LK-------------------------KWNII 103 :: : :: : d1lyva_ 237 SRNSQLSVEDMVSQ----MRVQ---RNG-IMVQKDEQLDVLIKLAEGQGRPLLNS----- 283 d1t6t1_ 104 HIEEI 108 d1lyva_ 284 ----- 284 HHsearch alignment (Probability: 0.00 E-value:0.48) d1t6t1_ 61 VILLFDL-DTHGERINQKMKELLSSQGFLV 89 ::::::: :::::::::::::::::::::: d1lyva_ 215 VIHSRAGVGRTAQLIGAMCMNDSRNSQLSV 244