Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1t6t1_ | Hypothetical protein aq 2086 | Toprim domain (Pfam 01751) | Toprim domain (Pfam 01751) | α/β |
| Hit | d1g4us2 | SptP tyrosine phosphatase, catalytic domain | (Phosphotyrosine protein) phosphatases II | (Phosphotyrosine protein) phosphatases II | α/β |
Query <-- 0.610 --> IntermediateDALI alignment (Z-score: 4.8 Raw score:306.10) query 1 npneayrhymkklsyetDIADLSIDikkgyEGIIVVDvRDAEaYKECH----IPTAISIP 56 :::::::: ::::::: :::: ::::: :::::::: d1t6t1_ 1 -----------prnlseWIKELKKA----sREAVILV-EGKN-DKKALskfsIKNVIDLS 43 query 57 gnKINEdTTKRLSKEK-VIITYCWGPA--CNGATKAAAKFAQLGFRVKE------liggi 107 :::: ::::::::: :::::::::: :::::::::::::::::::: d1t6t1_ 44 gkRYAD-VVDMLEGKWeKVILLFDLDThgERINQKMKELLSSQGFLVDEnfrnflkkwni 102 query 108 EYWRkengevegtlgakadlfwnmkkesle 137 :::: d1t6t1_ 103 IHIE------------------------ei 108 FAST alignment (Normalized score: 4.56 Raw score:554.40) query 1 NPNEAYRHYMKKLSYET------DIADLSIDIKKGYEGIIVVDVRDAEAYKECH------ 48 ::::::::: ::::::: ::::::: d1t6t1_ 1 -----------------PRNLSEWIKELKKAS----REAVILV-EGKNDKK---ALSKFS 35 query 49 IPTAISIPGNKI-----NEDTTKRLSKE--KVIITYCWGPA---CNGATKAAAKFAQLGF 98 :::::: ::::::: ::: :::::::::: :::::::::::::::: d1t6t1_ 36 IKNVID------LSGKRYADVVDM-LEGKWEKVILLFDLD-THGERINQKMKELLSSQGF 87 query 99 RVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE------------------ 137 ::: d1t6t1_ 88 LVD------------------------------------ENFRNFLKKWNIIHIEEI 108 TMalign alignment (TM-score: 0.48 Raw score:65.09) query 1 --NPNEAYRHYMKKLSYETDIA-DLS-IDIKKGYEGIIVVDVRDAEAYKECHI--P---- 50 :: ::: ::: :::::::::: : :: ::: : d1t6t1_ 1 PR------------------NLSEWIKELK-KASREAVILV-E----GK-NDKKALSKFS 35 query 51 -T-AISIPGNKINEDTTKRL--SKEKVIITYCWGPA--CNGATKAAAKFAQLGFRVKE-- 102 : :::::::::: :::::: ::: :::::::::: :::::::::::::::::::: d1t6t1_ 36 IKNVIDLSGKRYA-DVVDMLEGKWE-KVILLFDLDTHGERINQKMKELLSSQGFLVDENF 93 query 103 LI-GG---IEYWRKENGEVEGTLGAKADLFWNMKKESLE 137 :: :: :::::: : d1t6t1_ 94 RNFLKKWNIIHIEE--I---------------------- 108 HHsearch alignment (Probability: 0.05 E-value:0.04) query 49 IPTAISIPGNKINEDTTKRLSKEKVIITYCWGPACNGATKAAA----KFAQLGFRV 100 ::::::::::::::::::::::::::::::::: :::::::: ::::::::: d1t6t1_ 36 IKNVIDLSGKRYADVVDMLEGKWEKVILLFDLD--THGERINQKMKELLSSQGFLV 89
Intermediate <-- 0.936 --> HitDALI alignment (Z-score: 2.6 Raw score:306.30) d1t6t1_ 1 ---------------------------------------------------------pRN 3 :: d1g4us2 1 pqtmsgptlglarfavssipinqqtqvklsdgmpvpvntltfdgkpvalagsypkntpDA 60 d1t6t1_ 4 LSEWIKELKKAsREAVILVEGKN-------dkKALSK----------------------- 33 ::::::::::: ::::::::::: ::::: d1g4us2 61 LEAHMKMLLEK-ECSCLVVLTSEdqmqakqlpPYFRGsytfgevhtnsqkvssasqgeai 119 d1t6t1_ 34 ------------fsiKNVIDLSG----------kRYADVVDMLEGkweKVILLFDLdthG 71 :::::::: ::::::::::: :::::::: : d1g4us2 120 dqynmqlscgekrytIPVLHVKNwpdhqplpstdQLEYLADRVKN-khLPMIHCLG---G 175 d1t6t1_ 72 ERINQKMKELLSSQG------------------flvdenfrnflkkwniihieei 108 ::::::::::::::: d1g4us2 176 VGRTGTMAAALVLKDnphsnleqvradfrdsrnnrmledasqfvqlkamqaqllm 230 FAST alignment (Normalized score: 2.17 Raw score:341.30) d1t6t1_ 1 PRN--------------------------------------------------------L 4 : d1g4us2 1 ---PQTMSGPTLGLARFAVSSIPINQQTQVKLSDGMPVPVNTLTFDGKPVALAGSYPKNT 57 d1t6t1_ 5 SEWIKELKKASRE----AVILVEGKNDKKALSKFSI------------------------ 36 :::::::::::: ::::: d1g4us2 58 PDALEAHMKMLL-EKECSCLVV--------------LTSEDQMQAKQLPPYFRGSYTFGE 102 d1t6t1_ 37 --------------------------------KNVIDLSGK------------RYADVVD 52 ::::::: ::::::: d1g4us2 103 VHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVK--NWPDHQPLPSTDQLEYLAD 160 d1t6t1_ 53 MLEGKW--EKVILLFD--LDTHGERINQKMKELLSSQGFLVDENFRNFLKKWNIIHIEEI 108 ::: ::::::: :::::::::::::: d1g4us2 161 RVK---NKHLPMIHC-LGGVGRTGTMAAALVL---------------------------- 188 d1t6t1_ 109 ------------------------------------------ 109 d1g4us2 189 KDNPHSNLEQVRADFRDSRNNRMLEDASQFVQLKAMQAQLLM 230 TMalign alignment (TM-score: 0.53 Raw score:56.93) d1t6t1_ 1 ----------------------------P---R-------------------------NL 4 : : :: d1g4us2 1 PQTMSGPTLGLARFAVSSIPINQQTQVKLSDGMPVPVNTLTFDGKPVALAGSYPKNTPDA 60 d1t6t1_ 5 -SEWIKELKKASREAVILVEGKN--D-----KKALS-K-------FSI------------ 36 ::::::: :::::::::::::: : ::::: : ::: d1g4us2 61 LEAHMKML-LEKECSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAI 119 d1t6t1_ 37 ----K-----------NVIDLSG------K----RYADVVDMLEGK-WEKVILLFDLDTH 70 : ::::::: : :::::::::: : ::::::::: d1g4us2 120 DQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVK-NK-HLPMIHCLG--- 174 d1t6t1_ 71 GERINQKMKELLSSQG------------FLVDE---NFRN-------------------- 95 :::::::::::::::: : : d1g4us2 175 GVGRTGTMAAALVLKDNPHSNLEQVRAD----FRDS---RNNRMLEDASQFVQLKAMQAQ 227 d1t6t1_ 96 ---FLKKWNIIHIEEI 108 d1g4us2 228 LLM------------- 230 HHsearch alignment (Probability: 0.00 E-value:0.52) d1t6t1_ 49 DVVDMLEGKWEKVILLFDLDTHGERINQKMKELLSS 84 ::::::::::::::::::: ::::::::::::::: d1g4us2 157 YLADRVKNKHLPMIHCLGG--VGRTGTMAAALVLKD 190