Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qxna_ | Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1t6t1_ | Hypothetical protein aq 2086 | Toprim domain (Pfam 01751) | Toprim domain (Pfam 01751) | α/β |
Query <-- 1.002 --> IntermediateDALI alignment (Z-score: 10.4 Raw score:602.30) query 1 ------NPNEAYRHYMKKLS--YETDIADLSIDIKkGYEGIIVVDVRDAEAYK-ECHIPT 51 :::::::::::::: ::::::::::::: ::::::::::::::::: :::::: d1qxna_ 1 admgekFDATFKAQVKAAKAdmVMLSPKDAYKLLQ-ENPDITLIDVRDPDELKaMGKPDV 59 query 52 --AISIPgNKINeDTTK--RLSKEKVIITYCwgpaCNGATKAAAKFAQLGF-RVKELIGG 106 ::::: :::: :::: :::::::::::: :::::::::::::::: :::::::: d1qxna_ 60 knYKHMSrGKLE-PLLAksGLDPEKPVVVFC--ktAARAALAGKTLREYGFkTIYNSEGG 116 query 107 IEYWRKENGEVEGTLgakadlfwnmkkesle 137 ::::::::::::::: d1qxna_ 117 MDKWLEEGLPSLDRS----------hhhhhh 137 FAST alignment (Normalized score: 8.73 Raw score:1196.00) query 1 N----PNEAYRHYMKKLS-----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKE-CHI- 49 ::::::::::::: ::::::::::::: :::::::::::::::::: ::: d1qxna_ 1 -ADMGEKFDATFKAQVKAAKADMVMLSPKDAYKLLQ-ENPDITLIDVRDPDELKAMGKPD 58 query 50 -PTAISIPGNKIN-----EDTTK--RLSKEKVIITYCW--GPACNGATKAAAKFAQLGF- 98 :::::: ::::: :::::::::: :::: :::::::::::::: d1qxna_ 59 VKNYKHM------SRGKLEPLLAKSGLDPEKPVVV---FCKTAA-RAALAGKTLREYGFK 108 query 99 RVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::::::::::::::::::::: d1qxna_ 109 TIYNSEGGMDKWLEEGLPSLD------------------RSHHHHHH 137 TMalign alignment (TM-score: 0.61 Raw score:83.41) query 1 -------------------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDA 41 ::::::::::::::::: :::::::::::: d1qxna_ 1 ADMGEKFDATFKAQVKAAK-----------ADMVMLSPKDAYKLLQE-NPDITLIDVRDP 48 query 42 EAYKE-CHIPT--AISIPGNKINEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 ::::: ::::: :::::::::: :::: :::::::::::: : ::::::::::::::: d1qxna_ 49 DELKAMGKPDVKNYKHMSRGKLE-PLLAKSGLDPEKPVVVFC-K-TAARAALAGKTLREY 105 query 97 GFR-VKELIGGIEYWRKENGEVEGTLGAK----ADLFWNMKKESLE 137 ::: :::::::::::::::::::: :::: d1qxna_ 106 GFKTIYNSEGGMDKWLEEGLPSLD-RSHHHHHH------------- 137 HHsearch alignment (Probability: 1.00 E-value:0.00) query 16 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKE---CHIPTAISIPGNKINEDTTKR--LSK 70 :::::::::::::: :::::::::::::::: :::::::::::::: :::::: ::: d1qxna_ 24 MLSPKDAYKLLQEN-PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKL-EPLLAKSGLDP 81 query 71 EKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTL 121 :::::::::::: ::::::::::::::: :::::::::::::::::::::: d1qxna_ 82 EKPVVVFCKTAA--RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131
Intermediate <-- 0.798 --> HitDALI alignment (Z-score: 4.9 Raw score:301.00) d1qxna_ 1 admgekfdatfkaqvkaakadmvmlspKDAYKLLqenPDITLIDVRdpdelkamGKPD-- 58 ::::::: ::::::::: :::: d1t6t1_ 1 -------------------prnlsewiKELKKAS---REAVILVEG----kndkKALSkf 34 d1qxna_ 59 -VKNYKHMSRgklePLLAKS--GLDPEK-PVVVFC--kTAAR--AALAGKTLREYGFkTI 110 ::::::::: :::::: :::::: :::::: :::: ::::::::::::: :: d1t6t1_ 35 sIKNVIDLSG----KRYADVvdMLEGKWeKVILLFdldTHGEriNQKMKELLSSQGF-LV 89 d1qxna_ 111 YN--SEGG----mDKWLEEglpsldrshhhhhh 137 :: :::: :::::: d1t6t1_ 90 DEnfRNFLkkwniIHIEEI-------------- 108 FAST alignment (Normalized score: 3.55 Raw score:432.30) d1qxna_ 1 ADMGEKFDATFKAQVKAAKADMVML------SPKDAYKLLQENPDITLIDVRDPDELKAM 54 ::::::::: ::::::: :::::: d1t6t1_ 1 -------------------------PRNLSEWIKELKKAS---REAVILV-EGKNDK--- 28 d1qxna_ 55 G----KPDVKNYKHMSRGKLEP--LLAKSGLDPE---------KPVVV-FCKTAA----- 93 ::::::::::: :::: ::::: :::: d1t6t1_ 29 -KALSKFSIKNVIDLS------GKRYAD------VVDMLEGKWEKVILLFDLD--THGER 73 d1qxna_ 94 RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRSHHHHHH---------------- 137 ::::::::::::: :::: d1t6t1_ 74 INQKMKELLSSQG-FLVD--------------------------ENFRNFLKKWNIIHIE 106 d1qxna_ 138 -- 138 d1t6t1_ 107 EI 108 TMalign alignment (TM-score: 0.46 Raw score:63.17) d1qxna_ 1 ---ADMGEKFDATFKAQVKAAKADMVMLSP--KDAYKLLQEN-PDITLIDVRDPDELKAM 54 : :: :: :::: ::::::::: : : d1t6t1_ 1 PRN--------------------------LSEWI-KE-LKKASREAVILVEG-K--N--- 26 d1qxna_ 55 GK--PD----VKNYKHMSRGKLEPLL-AKSGLDP-EKPVVVFC-K-TAA--RAALAGKTL 102 : :: :::::::::: ::::: : :::: :::::::: : ::: ::::::::: d1t6t1_ 27 -DKKALSKFSIKNVIDLSGK-RYADVVD--MLEGKWEKVILLFDLDTHGERINQKMKELL 82 d1qxna_ 103 REYGFKTIYN--SE--G--GMDKW-LEEGLPSLDRSHHHHHH 137 ::::: :::: :: : ::::: : : d1t6t1_ 83 SSQGF-LVDENFRNFLKKWNIIHIEE---I------------ 108 HHsearch alignment (Probability: 0.08 E-value:0.06) d1qxna_ 35 QENPD-ITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDPEKPVVVFCK--T 91 ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::: : d1t6t1_ 13 KASREAVILVE--GKNDKKALSKFSIKNVIDLSGKRYADVVDMLEGKWEKVILLFDLDTH 70 d1qxna_ 92 AAR-AALAGKTLREYGFK 108 ::: :::::::::::::: d1t6t1_ 71 GERINQKMKELLSSQGFL 88