Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qxna_ | Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1yaca_ | YcaC | Isochorismatase-like hydrolases | Isochorismatase-like hydrolases | α/β |
Query <-- 1.002 --> IntermediateDALI alignment (Z-score: 10.4 Raw score:602.30) query 1 ------NPNEAYRHYMKKLS--YETDIADLSIDIKkGYEGIIVVDVRDAEAYK-ECHIPT 51 :::::::::::::: ::::::::::::: ::::::::::::::::: :::::: d1qxna_ 1 admgekFDATFKAQVKAAKAdmVMLSPKDAYKLLQ-ENPDITLIDVRDPDELKaMGKPDV 59 query 52 --AISIPgNKINeDTTK--RLSKEKVIITYCwgpaCNGATKAAAKFAQLGF-RVKELIGG 106 ::::: :::: :::: :::::::::::: :::::::::::::::: :::::::: d1qxna_ 60 knYKHMSrGKLE-PLLAksGLDPEKPVVVFC--ktAARAALAGKTLREYGFkTIYNSEGG 116 query 107 IEYWRKENGEVEGTLgakadlfwnmkkesle 137 ::::::::::::::: d1qxna_ 117 MDKWLEEGLPSLDRS----------hhhhhh 137 FAST alignment (Normalized score: 8.73 Raw score:1196.00) query 1 N----PNEAYRHYMKKLS-----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKE-CHI- 49 ::::::::::::: ::::::::::::: :::::::::::::::::: ::: d1qxna_ 1 -ADMGEKFDATFKAQVKAAKADMVMLSPKDAYKLLQ-ENPDITLIDVRDPDELKAMGKPD 58 query 50 -PTAISIPGNKIN-----EDTTK--RLSKEKVIITYCW--GPACNGATKAAAKFAQLGF- 98 :::::: ::::: :::::::::: :::: :::::::::::::: d1qxna_ 59 VKNYKHM------SRGKLEPLLAKSGLDPEKPVVV---FCKTAA-RAALAGKTLREYGFK 108 query 99 RVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::::::::::::::::::::: d1qxna_ 109 TIYNSEGGMDKWLEEGLPSLD------------------RSHHHHHH 137 TMalign alignment (TM-score: 0.61 Raw score:83.41) query 1 -------------------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDA 41 ::::::::::::::::: :::::::::::: d1qxna_ 1 ADMGEKFDATFKAQVKAAK-----------ADMVMLSPKDAYKLLQE-NPDITLIDVRDP 48 query 42 EAYKE-CHIPT--AISIPGNKINEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 ::::: ::::: :::::::::: :::: :::::::::::: : ::::::::::::::: d1qxna_ 49 DELKAMGKPDVKNYKHMSRGKLE-PLLAKSGLDPEKPVVVFC-K-TAARAALAGKTLREY 105 query 97 GFR-VKELIGGIEYWRKENGEVEGTLGAK----ADLFWNMKKESLE 137 ::: :::::::::::::::::::: :::: d1qxna_ 106 GFKTIYNSEGGMDKWLEEGLPSLD-RSHHHHHH------------- 137 HHsearch alignment (Probability: 1.00 E-value:0.00) query 16 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKE---CHIPTAISIPGNKINEDTTKR--LSK 70 :::::::::::::: :::::::::::::::: :::::::::::::: :::::: ::: d1qxna_ 24 MLSPKDAYKLLQEN-PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKL-EPLLAKSGLDP 81 query 71 EKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTL 121 :::::::::::: ::::::::::::::: :::::::::::::::::::::: d1qxna_ 82 EKPVVVFCKTAA--RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131
Intermediate <-- 1.059 --> HitDALI alignment (Z-score: 3.0 Raw score:297.30) d1qxna_ 1 admgekfdatfkaqvkaakadmvmlspkdaykllqENPDITLIDVR-DPDELKAM----- 54 ::::::::::: :::::::: d1yaca_ 1 ----------------------------tkpyvrlDKNDAAVLLVDhQAGLLSLVrdiep 32 d1qxna_ 55 --------gkPDVK-----NYKHMS----------------------------RGKLE-- 71 :::: :::::: ::::: d1yaca_ 33 dkfknnvlalGDLAkyfnlPTILTTsaetgpngplvpelkaqfpdapyiarpgNINAWdn 92 d1qxna_ 72 -PLLAkSGLD-peKPVVVFC-kTAARAALAGKTLREYGFkTIYNSEGGM----------- 117 :::: :::: ::::::: ::::::::::::::::: ::::::::: d1yaca_ 93 eDFVK-AVKAtgkKQLIIAGvvTEVCVAFPALSAIEEGF-DVFVVTDASgtfneitrhsa 150 d1qxna_ 118 ----------------------------------dkwleeglpsldrshhhhhh 137 d1yaca_ 151 wdrmsqagaqlmtwfgvacelhrdwrndiaglatlfsnhipdyrnlmtsydtlt 204 FAST alignment (Normalized score: 2.86 Raw score:478.20) d1qxna_ 1 ADMGEKFDATFKAQVKAAKADMVML----------------------------------- 25 d1yaca_ 1 -------------------------TKPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKF 35 d1qxna_ 26 --SPKDAYKLLQENPDITLIDVRDPD-ELKA--MGKPDVKN---------YKHMSRGK-- 69 :::::::::::: :::::::: :::: :::: :::: d1yaca_ 36 KNNVLALGDLAKYF-NLPTILTT---SAETGPNGPLV----PELKAQFPDAPYI----AR 83 d1qxna_ 70 -----------LEPLLAKSGLDPEKPVVV--FCKTAARAALAGKTLREYGFKTIYNSEGG 116 :::::::::: ::::: ::::: :::::::::::::: :::::: d1yaca_ 84 PGNINAWDNEDFVKAVKATGK---KQLIIAGVVTEV-CVAFPALSAIEEGF-DVFVVT-- 136 d1qxna_ 117 MDKWLEEGLPSLDRSHHHHHH--------------------------------------- 137 d1yaca_ 137 ---------------------DASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRDW 175 d1qxna_ 138 ----------------------------- 138 d1yaca_ 176 RNDIAGLATLFSNHIPDYRNLMTSYDTLT 204 TMalign alignment (TM-score: 0.46 Raw score:63.13) d1qxna_ 1 -------------------------------------ADMGEKFDATFKAQVKAAKADMV 23 d1yaca_ 1 TKPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKFKN----------------------- 37 d1qxna_ 24 MLSPKDAYKLLQENPDITLIDVRDPD---ELKAMGK-PD-VK--NYKHMS-RG-KL-E-P 72 :::::::::::::::::::::::: :: ::: :: :: :::::: :: :: : : d1yaca_ 38 --NVLALGDLAKYFNLPTILTTSAETGPNGP--LVPELKAQFPDAPYIARPGNINAWDNE 93 d1qxna_ 73 LLAKSGL--DPEKPVVVFCKTAARAALAGKTLREYGFKTIYN--SEGG------------ 116 ::::::: ::::::::::::::::::::::::::::::::: :::: d1yaca_ 94 DFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDR 153 d1qxna_ 117 -----------------------------------MDKWLEEGL---------------P 126 : d1yaca_ 154 MSQAGAQLMTWFGVACELHRDWRNDIAGLATLFSN--------HIPDYRNLMTSYDTLT- 204 d1qxna_ 127 SLDRSHHHHHH 137 d1yaca_ 205 ----------- 205 HHsearch alignment (Probability: 0.32 E-value:0.00) d1qxna_ 78 GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLE 122 ::::::::::::::::::::::::::::::: ::::::::::::: d1yaca_ 101 ATGKKQLIIAGVVTEVCVAFPALSAIEEGFD-VFVVTDASGTFNE 144