Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1gmxa_ | Sulfurtransferase GlpE | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1l1qa_ | Adenine PRTase | PRTase-like | PRTase-like | α/β |
Query <-- 1.662 --> IntermediateDALI alignment (Z-score: 13.4 Raw score:712.00) query 1 npneayrhymkklsYETDIADLSIDIKkgYEGIIVVDVRDAEAYKECHIPTAISIPgNKI 60 ::::::::::::: ::::::::::::::::::::::::::: ::: d1gmxa_ 1 ----------mdqfECINVADAHQKLQ--EKEAVLVDIRDPQSFAMGHAVQAFHLT-NDT 47 query 61 NEDTTKRLSKEKVIITYCWGpacNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG-EVE 118 :::::::::::::::::::: ::::::::::::::: ::::::::::::::::: ::: d1gmxa_ 48 LGAFMRDNDFDTPVMVMCYH--gNSSKGAAQYLLQQGYdVVYSIDGGFEAWQRQFPaEVA 105 query 119 GTlgakadlfwnmkkesle 137 :: d1gmxa_ 106 YG----------------a 108 FAST alignment (Normalized score: 11.37 Raw score:1383.00) query 1 NPNEAYRHYMKKLS----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIP 56 :::::::::::::: :::::::::::::::::::::::::: d1gmxa_ 1 --------------MDQFECINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLT 44 query 57 GNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLG-FRVKELIGGIEYWRKENG 115 ::: ::::::::::::::::::::: :::::::::::::: ::::::::::::::: d1gmxa_ 45 NDT-LGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQR--- 98 query 116 EVEGTLGAKADLFWNMKKESLE---------- 137 d1gmxa_ 99 ----------------------QFPAEVAYGA 108 TMalign alignment (TM-score: 0.65 Raw score:88.83) query 1 --NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN 58 : ::::::::::::: :::::::::::::::::::::::::::: d1gmxa_ 1 MD-----------Q-FECINVADAHQKL--QEKEAVLVDIRDPQSFAMGHAVQAFHLT-- 44 query 59 KINEDT-TKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG- 115 :::::: ::::::::::::::::: ::::::::::::::: ::::::::::::::::: d1gmxa_ 45 NDTLGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA 102 query 116 EVEGT-LGAKADLFWNMKKESLE 137 ::::: d1gmxa_ 103 EVAYGA----------------- 108 HHsearch alignment (Probability: 1.00 E-value:0.00) query 16 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVII 75 ::::::::::::: :::::::::::::::::::::::::::::: :::::::::::::: d1gmxa_ 6 CINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLTNDTL-GAFMRDNDFDTPVM 62 query 76 TYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTLGA 123 :::::: :::::::::::::::: :::::::::::::: ::::::::: d1gmxa_ 63 VMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVAYGA 108
Intermediate <-- 0.868 --> HitDALI alignment (Z-score: 3.1 Raw score:295.70) d1gmxa_ 1 --------------------------------mdqfecinvadAHQKLQEKEA-VLVDIR 27 :::::::::: :::::: d1l1qa_ 1 tmsvadahaliktipdfptkgiafkdlsdilstpaaldavrkeVTAHYKDVPItKVVGIE 60 d1gmxa_ 28 DpqsfamgHAVQ------AFHLTND----------------------TLGAfmRDNDFDT 59 : :::: ::::::: :::: ::::::: d1l1qa_ 61 S-rgfilgGIVAnslgvgFVALRKAgklpgdvckctfdmeyqkgvtiEVQK--RQLGPHD 117 d1gmxa_ 60 PVMVMCYHG---nSSKGAAQYLLQQGYD--VVYSIdgGFEA------------------W 96 ::::::::: ::::::::::::::: ::::: :::: : d1l1qa_ 118 VVLLHDDVLatggTLLAAIELCETAGVKpeNIYIN--VLYEiealkgrekvgqkctrlfS 175 d1gmxa_ 97 QRQfpaevayga 108 ::: d1l1qa_ 176 VIR------ehh 181 FAST alignment (Normalized score: 3.59 Raw score:502.30) d1gmxa_ 1 MDQFECI---------------------------------------NVADAHQKLQEKE- 20 ::::::::::::: d1l1qa_ 1 -------TMSVADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPI 53 d1gmxa_ 21 AVLVDIRDPQSFAMGHA----------VQAFHL-TNDTLGA------------------- 50 :::::: :::::: :::::: :::: d1l1qa_ 54 TKVVGI--ESRGFI---LGGIVANSLGVGFVALRKAGK---LPGDVCKCTFDMEYQKGVT 105 d1gmxa_ 51 ---FMRDNDFDTPVMVMCYH---GNSSKGAAQYLLQQGY--DVVYSIDGGFEAWQRQFPA 102 ::::::::::::::::: :::::::::::::::: :::::: d1l1qa_ 106 IEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYIN------------- 152 d1gmxa_ 103 EVAYGA----------------------------- 108 d1l1qa_ 153 ------VLYEIEALKGREKVGQKCTRLFSVIREHH 181 TMalign alignment (TM-score: 0.52 Raw score:56.23) d1gmxa_ 1 ------------------------------------------MDQFECINVADAH-QKLQ 17 : :: :: : d1l1qa_ 1 TMSVADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRK---------E-VTAHY-K 49 d1gmxa_ 18 EKEA-VLVDIRDPQSFAMGH--AVQA-----FHLTN----D------------------- 46 :::: :::::::: :: :: :::: ::::: : d1l1qa_ 50 DVPITKVVGIESR-GF--ILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTI 106 d1gmxa_ 47 -TLGAFMRDNDFDTPVMVMCYHG--N-SSKGAAQYLLQQGYD--VVYSIDGGFE------ 94 :::::: ::::::::::::: : ::::::::::::::: ::::: ::: d1l1qa_ 107 EVQKRQL---GPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYIN--VLYEIEALK 161 d1gmxa_ 95 -------------AWQRQ---FPAEVAYGA 108 :: :: d1l1qa_ 162 GREKVGQKCTRLFSV-IREHH--------- 181 HHsearch alignment (Probability: 0.08 E-value:0.02) d1gmxa_ 53 RDNDFDTPVMVMC---YHGNSSKGAAQYLLQQGYDV--V---YSIDGGFEAWQRQF 100 ::::::::::::: :::::::::::::::::::: : :::::::::::::: d1l1qa_ 111 RQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKV 166