Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1gmxa_ | Sulfurtransferase GlpE | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d2shpa1 | Tyrosine phosphatase | (Phosphotyrosine protein) phosphatases II | (Phosphotyrosine protein) phosphatases II | α/β |
Query <-- 1.662 --> IntermediateDALI alignment (Z-score: 13.4 Raw score:712.00) query 1 npneayrhymkklsYETDIADLSIDIKkgYEGIIVVDVRDAEAYKECHIPTAISIPgNKI 60 ::::::::::::: ::::::::::::::::::::::::::: ::: d1gmxa_ 1 ----------mdqfECINVADAHQKLQ--EKEAVLVDIRDPQSFAMGHAVQAFHLT-NDT 47 query 61 NEDTTKRLSKEKVIITYCWGpacNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG-EVE 118 :::::::::::::::::::: ::::::::::::::: ::::::::::::::::: ::: d1gmxa_ 48 LGAFMRDNDFDTPVMVMCYH--gNSSKGAAQYLLQQGYdVVYSIDGGFEAWQRQFPaEVA 105 query 119 GTlgakadlfwnmkkesle 137 :: d1gmxa_ 106 YG----------------a 108 FAST alignment (Normalized score: 11.37 Raw score:1383.00) query 1 NPNEAYRHYMKKLS----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIP 56 :::::::::::::: :::::::::::::::::::::::::: d1gmxa_ 1 --------------MDQFECINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLT 44 query 57 GNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLG-FRVKELIGGIEYWRKENG 115 ::: ::::::::::::::::::::: :::::::::::::: ::::::::::::::: d1gmxa_ 45 NDT-LGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQR--- 98 query 116 EVEGTLGAKADLFWNMKKESLE---------- 137 d1gmxa_ 99 ----------------------QFPAEVAYGA 108 TMalign alignment (TM-score: 0.65 Raw score:88.83) query 1 --NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN 58 : ::::::::::::: :::::::::::::::::::::::::::: d1gmxa_ 1 MD-----------Q-FECINVADAHQKL--QEKEAVLVDIRDPQSFAMGHAVQAFHLT-- 44 query 59 KINEDT-TKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG- 115 :::::: ::::::::::::::::: ::::::::::::::: ::::::::::::::::: d1gmxa_ 45 NDTLGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA 102 query 116 EVEGT-LGAKADLFWNMKKESLE 137 ::::: d1gmxa_ 103 EVAYGA----------------- 108 HHsearch alignment (Probability: 1.00 E-value:0.00) query 16 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVII 75 ::::::::::::: :::::::::::::::::::::::::::::: :::::::::::::: d1gmxa_ 6 CINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLTNDTL-GAFMRDNDFDTPVM 62 query 76 TYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTLGA 123 :::::: :::::::::::::::: :::::::::::::: ::::::::: d1gmxa_ 63 VMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVAYGA 108
Intermediate <-- 0.886 --> HitDALI alignment (Z-score: 1.9 Raw score:258.20) d1gmxa_ 1 ------------------------------------------------------------ 1 d2shpa1 1 trinaaeiesrvrelskgfweefetlqqqeckllysrkegqrqenknknryknilpfdht 60 d1gmxa_ 1 -----------------------mdqfecinVADAHQKLQEKEA-VLVDIRDPQS---fa 33 ::::::::::::: :::::::::: d2shpa1 61 rvvlhdsdyinaniimpkksyiatqgclqntVNDFWRMVFQENSrVIVMTTKEVErgksk 120 d1gmxa_ 34 mGHAV--------------------------------------------qAFHL------ 43 :::: :::: d2shpa1 121 cVKYWpdeyalkeygvmrvrnvkesaahdytlrelklskvgqgntertvwQYHFrtwpdh 180 d1gmxa_ 44 --------tNDTLGAFMRDND---fDTPVMVMCYHGN-SSKGAAQYLLQQG--------- 82 :::::::::::: :::::::::::: ::::::::::::: d2shpa1 181 gvpsdpggvLDFLEEVHHKQEsimdAGPVVVHCSAGIgRTGTFIVIDILIDiirekgvdc 240 d1gmxa_ 83 -------------ydvvysidggfeawqrqfpaevayga 108 d2shpa1 241 didvpktiqmvrsqrsgmvqteaqyrsiymavqhyietl 279 FAST alignment (Normalized score: 2.81 Raw score:486.90) d1gmxa_ 1 M----------------------------------------------------------- 1 d2shpa1 1 -TRINAAEIESRVRELSKGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDH 59 d1gmxa_ 2 -------------------DQFECI------NVADAHQKLQEKE-AVLVDIRDPQSFAMG 35 :::::: ::::::::::::: :::::::: d2shpa1 60 TRVVLHDSDYINANIIMPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTK------- 112 d1gmxa_ 36 HA--------------------------------------------------------VQ 39 :: d2shpa1 113 --EVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVW 170 d1gmxa_ 40 AFHL--------------TNDTLGAFMRDNDFDT--------PVMVMCYH-GNSSKGAAQ 76 :::: ::::::::::: :::::::: ::::::::: d2shpa1 171 QYHFRTWPDHGVPSDPGGVLDFLEEVHHK-----QESIMDAGPVVVHCSAGIGRTGTFIV 225 d1gmxa_ 77 YLLQQGYDVVYSIDGGFEAWQRQFPAEVAYGA---------------------------- 108 :::: d2shpa1 226 IDIL----------------------------IDIIREKGVDCDIDVPKTIQMVRSQRSG 257 d1gmxa_ 109 ---------------------- 109 d2shpa1 258 MVQTEAQYRSIYMAVQHYIETL 279 TMalign alignment (TM-score: 0.44 Raw score:47.24) d1gmxa_ 1 ------------------------------------------------------------ 1 d2shpa1 1 TRINAAEIESRVRELSKGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHT 60 d1gmxa_ 1 ---------------MD--QFECIN-V---A--DAHQKLQEKEAV-LVDIR--------- 27 :: :::::: : : :::::::::::: ::::: d2shpa1 61 RVVLHDSDYINANIIMPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSK 120 d1gmxa_ 28 ----------------------------DPQSFAMGHAV-------------QAFHL--- 43 :: :: ::: ::::: d2shpa1 121 CVKYWPDEYALKEYGVMRVRNVKESAAHDY--TL--RELKLSKVGQGNTERTVWQYHFRT 176 d1gmxa_ 44 ---------------TNDTLGAFMRDNDFDTPVMVMCYH-G-NSSKGAAQYLLQ-QG--- 82 :::::::::::::::::::::: : : :::::::::::: :: d2shpa1 177 WPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHC-SAGIGRTGTFIVIDILIDIIRE 235 d1gmxa_ 83 ---------------YDVV--YS------------------------IDGGFEAWQRQFP 101 : :: d2shpa1 236 KGVDCDIDVPKTIQM---VRSQRSGMVQTEAQYRSIYMAVQHYIETL------------- 279 d1gmxa_ 102 AEVAYGA 108 d2shpa1 280 ------- 280 HHsearch alignment (Probability: 0.09 E-value:0.01) d1gmxa_ 53 RDNDFDTPVMVMCYHGN-SSKGAA------QYLLQQGYD 84 ::::::::::::::::: :::::: ::::::::: d2shpa1 201 ESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVD 239