Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1gmxa_ | Sulfurtransferase GlpE | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1ecfa1 | Glutamine PRPP amidotransferase, C-terminal domain | PRTase-like | PRTase-like | α/β |
Query <-- 1.662 --> IntermediateDALI alignment (Z-score: 13.4 Raw score:712.00) query 1 npneayrhymkklsYETDIADLSIDIKkgYEGIIVVDVRDAEAYKECHIPTAISIPgNKI 60 ::::::::::::: ::::::::::::::::::::::::::: ::: d1gmxa_ 1 ----------mdqfECINVADAHQKLQ--EKEAVLVDIRDPQSFAMGHAVQAFHLT-NDT 47 query 61 NEDTTKRLSKEKVIITYCWGpacNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG-EVE 118 :::::::::::::::::::: ::::::::::::::: ::::::::::::::::: ::: d1gmxa_ 48 LGAFMRDNDFDTPVMVMCYH--gNSSKGAAQYLLQQGYdVVYSIDGGFEAWQRQFPaEVA 105 query 119 GTlgakadlfwnmkkesle 137 :: d1gmxa_ 106 YG----------------a 108 FAST alignment (Normalized score: 11.37 Raw score:1383.00) query 1 NPNEAYRHYMKKLS----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIP 56 :::::::::::::: :::::::::::::::::::::::::: d1gmxa_ 1 --------------MDQFECINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLT 44 query 57 GNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLG-FRVKELIGGIEYWRKENG 115 ::: ::::::::::::::::::::: :::::::::::::: ::::::::::::::: d1gmxa_ 45 NDT-LGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQR--- 98 query 116 EVEGTLGAKADLFWNMKKESLE---------- 137 d1gmxa_ 99 ----------------------QFPAEVAYGA 108 TMalign alignment (TM-score: 0.65 Raw score:88.83) query 1 --NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN 58 : ::::::::::::: :::::::::::::::::::::::::::: d1gmxa_ 1 MD-----------Q-FECINVADAHQKL--QEKEAVLVDIRDPQSFAMGHAVQAFHLT-- 44 query 59 KINEDT-TKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG- 115 :::::: ::::::::::::::::: ::::::::::::::: ::::::::::::::::: d1gmxa_ 45 NDTLGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA 102 query 116 EVEGT-LGAKADLFWNMKKESLE 137 ::::: d1gmxa_ 103 EVAYGA----------------- 108 HHsearch alignment (Probability: 1.00 E-value:0.00) query 16 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVII 75 ::::::::::::: :::::::::::::::::::::::::::::: :::::::::::::: d1gmxa_ 6 CINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLTNDTL-GAFMRDNDFDTPVM 62 query 76 TYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTLGA 123 :::::: :::::::::::::::: :::::::::::::: ::::::::: d1gmxa_ 63 VMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVAYGA 108
Intermediate <-- 0.968 --> HitDALI alignment (Z-score: 2.1 Raw score:244.50) d1gmxa_ 1 -------------------------mdqfeciNVADAHQkLQEKEA-VLVDIRDpqsfam 34 ::::::: :::::: ::::::: d1ecfa1 1 npclfeyvyfarpdsfidkisvysarvnmgtkLGEKIAReWEDLDIdVVIPIPE---tsc 57 d1gmxa_ 35 GHAV--------QAFHLTN-------------------------dtLGAFmrdndFDTPV 61 :::: ::::::: :::: ::::: d1ecfa1 58 DIALeiarilgkPYRQGFVknryvgrtfimpgqqlrrksvrrklnaNRAE----fRDKNV 113 d1gmxa_ 62 MVMCYH---gnSSKGAAQYLLQQGYDVVYSIdgGFEA----------------------- 95 :::::: :::::::::::::::::::: :::: d1ecfa1 114 LLVDDSivrgtTSEQIIEMAREAGAKKVYLA--SAAPeirfpnvygidmpsateliahgr 171 d1gmxa_ 96 -----------------------------------------------------------w 96 d1ecfa1 172 evdeirqiigadglifqdlndlidavraenpdiqqfecsvfngvyvtkdvdqgyldfldt 231 d1gmxa_ 97 qrqfpaevayga 108 d1ecfa1 232 lrnddakavqrq 243 FAST alignment (Normalized score: 2.58 Raw score:417.10) d1gmxa_ 1 MDQFECI-------------------------NVADAHQKLQEKE-----------AVLV 24 :::::::::: :::: d1ecfa1 1 -------NPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGE---KIAREWEDLDIDVVI 50 d1gmxa_ 25 DIRDPQSFAMGHA---------------VQAFHLTNDTLGA------------------- 50 ::: ::::: d1ecfa1 51 PIP----------ETSCDIALEIARILGKPYRQ--------GFVKNRYVGRTFIMPGQQL 92 d1gmxa_ 51 -----------FMRDNDFDTPVMVMCY----HGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 ::::: ::::::::: ::::::::::::::::::::::: d1ecfa1 93 RRKSVRRKLNANRAEF-RDKNVLLVD-DSIVRGTTSEQIIEMAREAGAKKVYLA------ 144 d1gmxa_ 96 WQRQFPAEVAYGA----------------------------------------------- 108 d1ecfa1 145 -------------SAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLN 191 d1gmxa_ 109 ---------------------------------------------------- 109 d1ecfa1 192 DLIDAVRAENPDIQQFECSVFNGVYVTKDVDQGYLDFLDTLRNDDAKAVQRQ 243 TMalign alignment (TM-score: 0.52 Raw score:55.76) d1gmxa_ 1 --------------------------------MDQFECINV--ADAHQ-KLQEKEA-VLV 24 : : ::: : ::::: ::: d1ecfa1 1 NPCLFEYVYFARPDSFIDKISVYSARVNMGTK--------LGEK-IAREW-EDLDIDVVI 50 d1gmxa_ 25 DIRDPQSFAMGHA-V-Q------AFH-LTND-----------------------TLGAFM 52 :::: ::: ::: : : ::: :::: ::: : d1ecfa1 51 PIPE--TSC-DIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNAN--R 105 d1gmxa_ 53 RDNDFDTPVMVMCYHG--N-SSKGAAQYLLQQGYDVVYSIDGGFE--------------- 94 : :::::::::::::: : :::::::::::::::::::: ::: d1ecfa1 106 A-EFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLA--SAAPEIRFPNVYGIDMPS 162 d1gmxa_ 95 -------------------------AW--QRQFP-------------------------- 101 :: ::::: d1ecfa1 163 ATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAENPDIQQFECSVFNGVYVTKDVD 222 d1gmxa_ 102 ---------------------AEVAYGA 108 d1ecfa1 223 QGYLDFLDTLRNDDAKAVQRQ------- 243 HHsearch alignment (Probability: 0.21 E-value:0.01) d1gmxa_ 21 AVLVDIRDPQSFAMGHAVQAFHLTNDT-----------------------LGAFM---RD 54 ::::::::::::::::::::::::::: ::::: :: d1ecfa1 47 DVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRA 106 d1gmxa_ 55 NDFDTPVMVMCY---HGNSSKGAAQYLLQQGYDVVYSID 90 :::::::::::: :::::::::::::::::::::::: d1ecfa1 107 EFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLAS 145