Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1gmxa_ | Sulfurtransferase GlpE | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1jlra_ | Uracil PRTase, Upp | PRTase-like | PRTase-like | α/β |
Query <-- 1.662 --> IntermediateDALI alignment (Z-score: 13.4 Raw score:712.00) query 1 npneayrhymkklsYETDIADLSIDIKkgYEGIIVVDVRDAEAYKECHIPTAISIPgNKI 60 ::::::::::::: ::::::::::::::::::::::::::: ::: d1gmxa_ 1 ----------mdqfECINVADAHQKLQ--EKEAVLVDIRDPQSFAMGHAVQAFHLT-NDT 47 query 61 NEDTTKRLSKEKVIITYCWGpacNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG-EVE 118 :::::::::::::::::::: ::::::::::::::: ::::::::::::::::: ::: d1gmxa_ 48 LGAFMRDNDFDTPVMVMCYH--gNSSKGAAQYLLQQGYdVVYSIDGGFEAWQRQFPaEVA 105 query 119 GTlgakadlfwnmkkesle 137 :: d1gmxa_ 106 YG----------------a 108 FAST alignment (Normalized score: 11.37 Raw score:1383.00) query 1 NPNEAYRHYMKKLS----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIP 56 :::::::::::::: :::::::::::::::::::::::::: d1gmxa_ 1 --------------MDQFECINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLT 44 query 57 GNKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLG-FRVKELIGGIEYWRKENG 115 ::: ::::::::::::::::::::: :::::::::::::: ::::::::::::::: d1gmxa_ 45 NDT-LGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQR--- 98 query 116 EVEGTLGAKADLFWNMKKESLE---------- 137 d1gmxa_ 99 ----------------------QFPAEVAYGA 108 TMalign alignment (TM-score: 0.65 Raw score:88.83) query 1 --NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGN 58 : ::::::::::::: :::::::::::::::::::::::::::: d1gmxa_ 1 MD-----------Q-FECINVADAHQKL--QEKEAVLVDIRDPQSFAMGHAVQAFHLT-- 44 query 59 KINEDT-TKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENG- 115 :::::: ::::::::::::::::: ::::::::::::::: ::::::::::::::::: d1gmxa_ 45 NDTLGAFMRDNDFDTPVMVMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA 102 query 116 EVEGT-LGAKADLFWNMKKESLE 137 ::::: d1gmxa_ 103 EVAYGA----------------- 108 HHsearch alignment (Probability: 1.00 E-value:0.00) query 16 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKRLSKEKVII 75 ::::::::::::: :::::::::::::::::::::::::::::: :::::::::::::: d1gmxa_ 6 CINVADAHQKLQE--KEAVLVDIRDPQSFAMGHAVQAFHLTNDTL-GAFMRDNDFDTPVM 62 query 76 TYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTLGA 123 :::::: :::::::::::::::: :::::::::::::: ::::::::: d1gmxa_ 63 VMCYHG--NSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVAYGA 108
Intermediate <-- 1.077 --> HitDALI alignment (Z-score: 2.3 Raw score:254.10) d1gmxa_ 1 --------------------------------------------------------mdqf 4 d1jlra_ 1 llvdprystndqeesilqdiitrfpnvvlmkqtaqlrammtiirdketpkeefvfyadrl 60 d1gmxa_ 5 eciNVADAHQKL-------------------qekeAVLVDIRDpqsfamGHAV------- 38 ::::::::: :::::::: :::: d1jlra_ 61 irlLIEEALNELpfqkkevttpldvsyhgvsfyskICGVSIVR---ageSMESglravcr 117 d1gmxa_ 39 --qAFHLT------------NDTLgaFMRDNdFDTPVMVMCYH---gnSSKGAAQYLLQQ 81 ::::: :::: ::::: ::::::::::: :::::::::::: d1jlra_ 118 gvrIGKILiqrdettaepklIYEK--LPADI-RERWVMLLDPMcatagSVCKAIEVLLRL 174 d1gmxa_ 82 GYD--VVYSIdgGFEA----------------------------------wqrqfpaeva 105 ::: ::::: :::: d1jlra_ 175 GVKeeRIIFV--NILAapqgiervfkeypkvrmvtaavdiclnsryyivpgigdfgdryf 232 d1gmxa_ 106 yga 108 d1jlra_ 233 gtm 235 FAST alignment (Normalized score: 2.48 Raw score:395.20) d1gmxa_ 1 MDQFECI----------------------------------------------------- 7 d1jlra_ 1 -------LLVDPRYSTNDQEESILQDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEF 53 d1gmxa_ 8 ----------NVADAHQKL---------------------QEKEAVLVDIR---DPQSFA 33 ::::::: :::::::::: :::::: d1jlra_ 54 VFYADRLIRLLIEEALN--ELPFQKKEVTTPLDVSYHGVSFYSKICGVSI-VRAGESMES 110 d1gmxa_ 34 MGH-----AVQAFHLTNDTLGAFMRDN-----------------------DFDTPVMVMC 65 ::::::: :::::::::: d1jlra_ 111 ---GLRAVCRGVRIG------------KILIQRDETTAEPKLIYEKLPADIRERWVMLLD 155 d1gmxa_ 66 YH---GNSSKGAAQYLLQQGY--DVVYSIDGGFEAWQRQFPAEVAYGA------------ 108 :: :::::::::::::::: :::::: d1jlra_ 156 PMCATAGSVCKAIEVLLRLGVKEERIIFV-------------------NILAAPQGIERV 196 d1gmxa_ 109 --------------------------------------- 109 d1jlra_ 197 FKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM 235 TMalign alignment (TM-score: 0.45 Raw score:48.61) d1gmxa_ 1 -----------------------MDQFECIN----------------------------- 8 ::::::: d1jlra_ 1 LLVDPRYSTNDQEESILQDIITR-FPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADR 59 d1gmxa_ 9 -V-ADAHQ-KLQEKE-----------------------A-VLVDIRDPQSFAMGH--AV- 38 : : ::: :: ::: : :::: :: :: :: d1jlra_ 60 LIRL-LIEEAL-NELPFQKKEVTTPLDVSYHGVSFYSKICGVSI------VR-AGESMES 110 d1gmxa_ 39 ----------Q--------------------------------AF-------HLTNDTLG 49 : :: :::: ::: d1jlra_ 111 GLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCK-AIE 169 d1gmxa_ 50 AFMRD-NDFDTPVMVMCYHGNS-SKGAAQY-LLQQGYDVVYSIDGG------------FE 94 ::::: ::::::::::: :::: ::::::: :: : :::::::: :: d1jlra_ 170 VLLRLGVKEERIIFVNI-LAAPQGIERVFKEYP---K-VRMVTAAVDICLNSRYYIVPGI 224 d1gmxa_ 95 --AWQ---RQFPAEVAY--GA 108 : ::: d1jlra_ 225 GD--FGDR------YFGTM-- 235 HHsearch alignment (Probability: 0.22 E-value:0.01) d1gmxa_ 57 FDTPVMVMC---YHGNSSKGAAQYLLQQGYDV--VYS-----IDGGFEAWQRQFPA 102 ::::::::: :::::::::::::::::::: ::: :::::::::::::: d1jlra_ 147 RERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPK 202