Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1e0ca1 | Sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1d5ra2 | Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain | (Phosphotyrosine protein) phosphatases II | (Phosphotyrosine protein) phosphatases II | α/β |
Query <-- 1.836 --> IntermediateDALI alignment (Z-score: 12.9 Raw score:767.20) query 1 npneayrhymkkLSYETDIADLSIDIkkGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI 60 :::::::::::::: :::::::::::::::::::::::::::::::: d1e0ca1 1 ------mddfasLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARFVDPKRT 52 query 61 ----------------NEDTTK--RLSKEKVIITYCWGPaCNGATKAAAKFAQLGF-RVK 101 :::::: ::::::::::::::: :::::::::::::::: ::: d1e0ca1 53 qlgqppapglqppreqLESLFGelGHRPEAVYVVYDDEG-GGWAGRFIWLLDVIGQqRYH 111 query 102 ELIGGIEYWRKENGEVEGTlgakadlfwnmkkesle 137 ::::::::::::::::::: d1e0ca1 112 YLNGGLTAWLAEDRPLSRE------------lpapa 135 FAST alignment (Normalized score: 11.21 Raw score:1524.00) query 1 NPNEAYRHYMKK------LSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 ------------MDDFASLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI-----------------NEDTTKRLS--KEKVIITYCWGP-ACNGATKAAAKFA 94 ::::: ::::::::: :::::::::: ::::::::::::: d1e0ca1 47 VDPKR-TQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDD--EGGGWAGRFIWLLD 103 query 95 QLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::: :::::::::::::::::::: d1e0ca1 104 VIGQQRYHYLNGGLTAWLAEDRPL--------------------SRELPAPA 135 TMalign alignment (TM-score: 0.67 Raw score:92.22) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 MDDFAS------------LPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI----------------NEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 :::::: :::::: ::::::::::::::: :::::::::::::: d1e0ca1 47 VDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEG-GGWAGRFIWLLDVI 105 query 97 GF-RVKELIGGIEYWRKENGEVEGT-----LGAKADLFWNMKKESLE 137 :: :::::::::::::::::::::: d1e0ca1 106 GQQRYHYLNGGLTAWLAEDRPLSRELPAPA----------------- 135 HHsearch alignment (Probability: 1.00 E-value:0.00) query 17 TDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI---------------- 60 :::::::::::: :::::::::::::::::::::::::::::: d1e0ca1 11 IEPADLQARLSA--PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQ 68 query 61 --NEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEV 117 :::::::::::::::::::::: ::::::::::::::: ::::::::::::::::::: d1e0ca1 69 LESLFGELGHRPEAVYVVYDDEGG-GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL 127 query 118 EGTLGAKA 125 :::::::: d1e0ca1 128 SRELPAPA 135
Intermediate <-- 0.698 --> HitDALI alignment (Z-score: 3.1 Raw score:294.00) d1e0ca1 1 ---mddfaSLPLV---------------------IEPADLQARLS---APELILVDLTSA 33 ::::: ::::::::::: :::::::::::: d1d5ra2 1 rryqedgfDLDLTyiypniiamgfpaerlegvyrNNIDDVVRFLDskhKNHYKIYNLCAE 60 d1e0ca1 34 ARyaeGHIP----GARFVDPK---RTQLgqppapglqpprEQLESLFGEL-GHRP---EA 82 :: :::: :::::::: :::: :::::::::: :::: :: d1d5ra2 61 RH---YDTAkfncRVAQYPFEdhnPPQL------------ELIKPFCEDLdQWLSeddNH 105 d1e0ca1 83 VYVVYDDEGGGWAGRFIWLLDVIG----------------qqryhylnggltawlaedrp 126 :::::::::::::::::::::::: d1d5ra2 106 VAAIHCKAGKGRTGVMICAYLLHRgkflkaqealdfygevrtrdkkgvtipsqrryvyyy 165 d1e0ca1 127 lsrelpapa 135 d1d5ra2 166 syllknhld 174 FAST alignment (Normalized score: 3.08 Raw score:472.50) d1e0ca1 1 MDDFASLPL---------------------------------VIEPADLQARLS-----A 22 :::::::::: : d1d5ra2 1 ---------RRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRF--LDSKHK 49 d1e0ca1 23 PELILVDLTSAARYAEGHI------------PGARFVDPKRTQLGQPPAP----GLQPPR 66 :::::::: :::::: :::::: d1d5ra2 50 NHYKIYNL-----------CAERHYDTAKFNCRVAQY-------------PFEDHNPPQL 85 d1e0ca1 67 EQLESLFGELGHRPE----------AVYVVYDDEG--GGWAGRFIWLLDVIGQQRYHYLN 114 ::::::::: :::::::: ::::::::::::: d1d5ra2 86 ELIKPFCED------LDQWLSEDDNHVAAIHCK--AGKGRTGVMICAYLL---------- 127 d1e0ca1 115 GGLTAWLAEDRPLSRELPAPA--------------------------------------- 135 d1d5ra2 128 ---------------------HRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYS 166 d1e0ca1 136 -------- 136 d1d5ra2 167 YLLKNHLD 174 TMalign alignment (TM-score: 0.45 Raw score:60.30) d1e0ca1 1 ------------MDDFASLPL----VIE-----------------P-ADLQARLSAPELI 26 ::: ::: : :::::::::: :: d1d5ra2 1 RRYQEDGFDLDL------TYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNH-YK 53 d1e0ca1 27 LVDLTSAARYAEGH-IP-G-ARFVDPK---RTQLGQPPAPGLQPPREQLESLFGELGHR- 79 :::::: ::: ::: :: : ::::::: :::: :: ::: :::::::: d1d5ra2 54 IYNLCA-ERH-YDTAKFNCRVAQYPFEDHNPPQL---------EL--IKP-FCEDLDQWL 99 d1e0ca1 80 PE---AVYVVYDDEGGGWAGRFIWLLDVIGQQ-------------RYHYLN--------- 114 :: ::::::::::::::::::::::::::: ::: d1d5ra2 100 SEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGE---VRTRDKKGVTIP 156 d1e0ca1 115 ------------------GGLTAWLAEDRPLSRELPAPA 135 d1d5ra2 157 SQRRYVYYYSYLLKNHLD--------------------- 174 HHsearch alignment (Probability: 0.47 E-value:0.00) d1e0ca1 15 DLQARLSAPELILVDLTSAARYAEGHIPGAR-FVDPKRTQLGQPPAPGLQPPREQLESLF 73 ::::::::::::::::::::::::::::::: ::::::: :::::::::::: d1d5ra2 42 RFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDH---------NPPQLELIKPFC 92 d1e0ca1 74 G----ELGHRPEAVYVVYDDEGGGWAGRFI 99 : ::::::::::::::::::::::::: d1d5ra2 93 EDLDQWLSEDDNHVAAIHCKAGKGRTGVMI 122