Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1e0ca1 | Sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1j7ja_ | Hypoxanthine PRTase | PRTase-like | PRTase-like | α/β |
Query <-- 1.836 --> IntermediateDALI alignment (Z-score: 12.9 Raw score:767.20) query 1 npneayrhymkkLSYETDIADLSIDIkkGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI 60 :::::::::::::: :::::::::::::::::::::::::::::::: d1e0ca1 1 ------mddfasLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARFVDPKRT 52 query 61 ----------------NEDTTK--RLSKEKVIITYCWGPaCNGATKAAAKFAQLGF-RVK 101 :::::: ::::::::::::::: :::::::::::::::: ::: d1e0ca1 53 qlgqppapglqppreqLESLFGelGHRPEAVYVVYDDEG-GGWAGRFIWLLDVIGQqRYH 111 query 102 ELIGGIEYWRKENGEVEGTlgakadlfwnmkkesle 137 ::::::::::::::::::: d1e0ca1 112 YLNGGLTAWLAEDRPLSRE------------lpapa 135 FAST alignment (Normalized score: 11.21 Raw score:1524.00) query 1 NPNEAYRHYMKK------LSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 ------------MDDFASLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI-----------------NEDTTKRLS--KEKVIITYCWGP-ACNGATKAAAKFA 94 ::::: ::::::::: :::::::::: ::::::::::::: d1e0ca1 47 VDPKR-TQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDD--EGGGWAGRFIWLLD 103 query 95 QLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::: :::::::::::::::::::: d1e0ca1 104 VIGQQRYHYLNGGLTAWLAEDRPL--------------------SRELPAPA 135 TMalign alignment (TM-score: 0.67 Raw score:92.22) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 MDDFAS------------LPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI----------------NEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 :::::: :::::: ::::::::::::::: :::::::::::::: d1e0ca1 47 VDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEG-GGWAGRFIWLLDVI 105 query 97 GF-RVKELIGGIEYWRKENGEVEGT-----LGAKADLFWNMKKESLE 137 :: :::::::::::::::::::::: d1e0ca1 106 GQQRYHYLNGGLTAWLAEDRPLSRELPAPA----------------- 135 HHsearch alignment (Probability: 1.00 E-value:0.00) query 17 TDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI---------------- 60 :::::::::::: :::::::::::::::::::::::::::::: d1e0ca1 11 IEPADLQARLSA--PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQ 68 query 61 --NEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEV 117 :::::::::::::::::::::: ::::::::::::::: ::::::::::::::::::: d1e0ca1 69 LESLFGELGHRPEAVYVVYDDEGG-GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL 127 query 118 EGTLGAKA 125 :::::::: d1e0ca1 128 SRELPAPA 135
Intermediate <-- 0.754 --> HitDALI alignment (Z-score: 2.9 Raw score:294.00) d1e0ca1 1 -------mddfaslplviEPADLQARLS--aPELILVDLTSaaryaeGHIP--------- 42 :::::::::: :::::::::: :::: d1j7ja_ 1 htvevmipeaeikariaeLGRQITERYKdsgSEMVLVGLLR---gsfMFMAdlcrevqvp 57 d1e0ca1 43 -gARFVDPKrtqlgqppaPGLQppreqlesLFGElGHRPeAVYVVYDDEG--ggWAGRFI 99 ::::::: :::: :::: :::: :::::::::: :::::: d1j7ja_ 58 heVDFMTAS---------RDVK-----ilkDLDE-DIRG-KDVLIVEDIIdsgnTLSKVR 101 d1e0ca1 100 WLLDvIGQQ-RYHYLngGLTA-------------WLAE---------------drplsre 130 :::: :::: ::::: :::: :::: d1j7ja_ 102 EILG-LREPkSLAIC--TLLDkpsrrevdvpvefVGFSipdefvvgygidyaqryrhlpy 158 d1e0ca1 131 lpapa 135 d1j7ja_ 159 vgkvv 163 FAST alignment (Normalized score: 3.49 Raw score:518.30) d1e0ca1 1 MDDFASLPLVI------------------EPADLQAR-LSAP-ELILVDLT---SAARYA 37 :::::::: :::: ::::::: :::::: d1j7ja_ 1 -----------HTVEVMIPEAEIKARIAELGRQITERYKDSGSEMVLVGL-LRGSFMFMA 48 d1e0ca1 38 EGHI---------PGARFVDPKRTQLGQPP--APGLQPPREQLESLFG-----ELGHRPE 81 ::::::: :::: :::: :: d1j7ja_ 49 ----DLCREVQVPHEVDFMT----------ASRDVK------------ILKDLDEDI-RG 81 d1e0ca1 82 AVYVVYDDE---GGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPA--- 135 :::::::: ::::::::::::::::::::::: d1j7ja_ 82 KDVLIVED-IIDSGNTLSKVREILGLREPKSLAIC----------------------TLL 118 d1e0ca1 136 --------------------------------------------- 136 d1j7ja_ 119 DKPSRREVDVPVEFVGFSIPDEFVVGYGIDYAQRYRHLPYVGKVV 163 TMalign alignment (TM-score: 0.47 Raw score:63.12) d1e0ca1 1 -----------------MDDFASLPLVIEP-ADLQA-RLS-APELILVDLTSAARYAEGH 40 :: ::::: ::: ::::::::: ::::: ::: d1j7ja_ 1 HTVEVMIPEAEIKARIA-----------ELGRQITERYKDSGSEMVLVGL-LRGSF-MFM 47 d1e0ca1 41 --IP-------GARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEG 91 :: :::::::: ::::: : ::: ::::: ::::::::::: d1j7ja_ 48 ADLCREVQVPHEVDFMTAS---------RDVKI---L--KDL-DEDIR-GKDVLIVEDII 91 d1e0ca1 92 G-G-WAGRFIWLLDVIGQQRYHYLNGGLT--------------AWLA------------- 122 : : :::::::::::::::::::: ::: :: : d1j7ja_ 92 DSGNTLSKVREILGLREPKSLAIC--TLLDKPSRREVDVPVEFVG-FSIPDEFVVGYGID 148 d1e0ca1 123 ---------------EDRPLSRELPAPA 135 d1j7ja_ 149 YAQRYRHLPYVGKVV------------- 163 HHsearch alignment (Probability: 0.01 E-value:0.58) d1e0ca1 79 RPEAVYVVYDD--EGGGWAGRFIWLLDVIGQQRYHY 112 ::::::::::: ::::::::::::::::::::::: d1j7ja_ 79 IRGKDVLIVEDIIDSGNTLSKVREILGLREPKSLAI 114