Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1e0ca1 | Sulfurtransferase | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1lw3a2 | Myotubularin-related protein 2, C-terminal domain | (Phosphotyrosine protein) phosphatases II | (Phosphotyrosine protein) phosphatases II | α/β |
Query <-- 1.836 --> IntermediateDALI alignment (Z-score: 12.9 Raw score:767.20) query 1 npneayrhymkkLSYETDIADLSIDIkkGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI 60 :::::::::::::: :::::::::::::::::::::::::::::::: d1e0ca1 1 ------mddfasLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARFVDPKRT 52 query 61 ----------------NEDTTK--RLSKEKVIITYCWGPaCNGATKAAAKFAQLGF-RVK 101 :::::: ::::::::::::::: :::::::::::::::: ::: d1e0ca1 53 qlgqppapglqppreqLESLFGelGHRPEAVYVVYDDEG-GGWAGRFIWLLDVIGQqRYH 111 query 102 ELIGGIEYWRKENGEVEGTlgakadlfwnmkkesle 137 ::::::::::::::::::: d1e0ca1 112 YLNGGLTAWLAEDRPLSRE------------lpapa 135 FAST alignment (Normalized score: 11.21 Raw score:1524.00) query 1 NPNEAYRHYMKK------LSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 ------------MDDFASLPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI-----------------NEDTTKRLS--KEKVIITYCWGP-ACNGATKAAAKFA 94 ::::: ::::::::: :::::::::: ::::::::::::: d1e0ca1 47 VDPKR-TQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDD--EGGGWAGRFIWLLD 103 query 95 QLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE-------- 137 ::: :::::::::::::::::::: d1e0ca1 104 VIGQQRYHYLNGGLTAWLAEDRPL--------------------SRELPAPA 135 TMalign alignment (TM-score: 0.67 Raw score:92.22) query 1 ------NPNEAYRHYMKKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAIS 54 :::::::::::::: :::::::::::::::::::::::::: d1e0ca1 1 MDDFAS------------LPLVIEPADLQARL--SAPELILVDLTSAARYAEGHIPGARF 46 query 55 IPGNKI----------------NEDTTK--RLSKEKVIITYCWGPACNGATKAAAKFAQL 96 :::::: :::::: ::::::::::::::: :::::::::::::: d1e0ca1 47 VDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEG-GGWAGRFIWLLDVI 105 query 97 GF-RVKELIGGIEYWRKENGEVEGT-----LGAKADLFWNMKKESLE 137 :: :::::::::::::::::::::: d1e0ca1 106 GQQRYHYLNGGLTAWLAEDRPLSRELPAPA----------------- 135 HHsearch alignment (Probability: 1.00 E-value:0.00) query 17 TDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKI---------------- 60 :::::::::::: :::::::::::::::::::::::::::::: d1e0ca1 11 IEPADLQARLSA--PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQ 68 query 61 --NEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEV 117 :::::::::::::::::::::: ::::::::::::::: ::::::::::::::::::: d1e0ca1 69 LESLFGELGHRPEAVYVVYDDEGG-GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL 127 query 118 EGTLGAKA 125 :::::::: d1e0ca1 128 SRELPAPA 135
Intermediate <-- 1.376 --> HitDALI alignment (Z-score: 1.8 Raw score:322.80) d1e0ca1 1 -----------------------------------------mddfASLP----------- 8 :::: d1lw3a2 1 evfpengwklydplleyrrqgipneswritkineryelcdtypalLVVPanipdeelkrv 60 d1e0ca1 9 -------------------------------------lviEPADLQARL----sAPELIL 27 ::::::::: :::::: d1lw3a2 61 asfrsrgripvlswihpesqatitrcsqpmvgvsgkrskeDEKYLQAIMdsnaqSHKIFI 120 d1e0ca1 28 VDLTSAARYAE------GHIP-------GARFVDPK------------------------ 50 ::::::::::: :::: :::::::: d1lw3a2 121 FDARPSVNAVAnkakggGYESedayqnaELVFLDIHnihvmreslrklkeivypnieeth 180 d1e0ca1 51 ---------------RTQLgqppapglqppreqleslfgelGHRP-EAVYVVYDDEGGGW 94 :::: :::: :::::::::::::: d1lw3a2 181 wlsnlesthwlehikLILA---------------galriadKVESgKTSVVVHSSDGWDR 225 d1e0ca1 95 AGRFIWLLDVIG------------------------------------------------ 106 :::::::::::: d1lw3a2 226 TAQLTSLAMLMLdgyyrtirgfevlvekewlsfghrfqlrvghgdknhadadrspvflqf 285 d1e0ca1 107 ------------------------------------------------------------ 107 d1lw3a2 286 idcvwqmtrqfptafefneyflitildhlysclfgtflcnseqqrgkenlpkrtvslwsy 345 d1e0ca1 107 --------------qqryhylnggltawlaedrplsrelpapa 135 d1lw3a2 346 insqledftnplygsysnhvlypvasmrhlelwvgyyirwnpr 388 FAST alignment (Normalized score: 2.22 Raw score:509.00) d1e0ca1 1 MDDFASLPLVI------------------------------------------------- 11 d1lw3a2 1 -----------EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVP 49 d1e0ca1 12 ---------------------------------------------------EPADLQARL 20 ::::::: d1lw3a2 50 ANIPDEELKRVASFRSRGRIPVLSWIHPESQATITRCSQPMVGVSGKRSKEDEKYLQA-- 107 d1e0ca1 21 SAP---------ELILVDLTSAARYA------EGHI-------PGARFVDPKRTQLGQ-- 56 :::::::::::::: :::: ::::::: d1lw3a2 108 ---IMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLD--------IH 156 d1e0ca1 57 -----------------------------PPAPGLQP--PREQLESLFGELGHR------ 79 ::::: ::::::::::: d1lw3a2 157 NIHVMRESLRKLKEIVYPNIEETHWLSNLESTHW---LEHIKLILAGALR----IADKVE 209 d1e0ca1 80 -PEAVYVVYDDEG--GGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPA- 135 :::::::::: ::::::::::::: d1lw3a2 210 SGKTSVVVHSS--DGWDRTAQLTSLAML-------------------------------M 236 d1e0ca1 136 ------------------------------------------------------------ 136 d1lw3a2 237 LDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQF 296 d1e0ca1 136 ------------------------------------------------------------ 136 d1lw3a2 297 PTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNP 356 d1e0ca1 136 -------------------------------- 136 d1lw3a2 357 LYGSYSNHVLYPVASMRHLELWVGYYIRWNPR 388 TMalign alignment (TM-score: 0.38 Raw score:50.65) d1e0ca1 1 ------------------------------------------------------------ 1 d1lw3a2 1 EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRV 60 d1e0ca1 1 ---MDDFASLPLVIEPADLQARLSAPELILVDLTSA-ARY-----AEGHIP--------G 43 ::: : : : d1lw3a2 61 ASF------------------------------RSRG--RIPVLS-----WIHPESQATI 83 d1e0ca1 44 ARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHR----PE-AVYVVYDD-EGGG-WA- 95 ::::::: :: :::::::::::: ::: ::: :: :::::::: :::: :: d1lw3a2 84 TRCSQPM-VG------VSGKRSKEDEKY-LQA-IMDSNAQSHKIFIFDARPSVNAVANKA 134 d1e0ca1 96 --GRFIWLLDV-IGQQRYHYLNGGLTA-WL----------------------------A- 122 ::::: :: :::::::::: :::: :: : d1lw3a2 135 KGGGYES--EDAYQNAELVFLD-IHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWL 191 d1e0ca1 123 -ED--RP-----------------------------L----------------------- 127 :: :: : d1lw3a2 192 EHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLV 251 d1e0ca1 128 --SR-EL----------------------------------------------------- 131 :: :: d1lw3a2 252 EKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITIL 311 d1e0ca1 132 ------------------------------------------------------------ 132 d1lw3a2 312 DHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVAS 371 d1e0ca1 132 -----------------PAPA 135 d1lw3a2 372 MRHLELWVGYYIRWNPR---- 388 HHsearch alignment (Probability: 0.29 E-value:0.01) d1e0ca1 74 GELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL-----TAWLAEDRPLS 128 :::::::::::::::::::::::::::::::::::::::::: : ::::::::::: d1lw3a2 205 ADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGYYRTIRG-FEVLVEKEWLSFGHRFQ 263 d1e0ca1 129 R 129 : d1lw3a2 264 L 264