Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T592_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1rhsa1 | Rhodanese | Rhodanese/Cell cycle control phosphatase | Rhodanese/Cell cycle control phosphatase | α/β |
| Hit | d1t5ba_ | ACP phosphodiesterase AcpD | Flavoproteins | Flavodoxin-like | α/β |
Query <-- 1.954 --> IntermediateDALI alignment (Z-score: 12.9 Raw score:817.80) query 1 npneayrhYMKKlSYETDIADLSIDIKKGYE--GIIVVDVR--------DAEAYKECHIP 50 :::: :::::::::::::::::: :::::::: ::::::::::: d1rhsa1 1 ------vhQVLY-RALVSTKWLAESVRAGKVgpGLRVLDASwyspgtreARKEYLERHVP 53 query 51 TAISIPGNKI----------------NEDTTKR--LSKEKVIITYCWGPA-CNGATKAAA 91 :::::::::: ::::::: ::::::::::::::: ::::::::: d1rhsa1 54 GASFFDIEECrdkaspyevmlpseagFADYVGSlgISNDTHVVVYDGDDLgSFYAPRVWW 113 query 92 KFAQLGF-RVKELIGGIEYWRKENGEVEGTlgakadlfwnmkkesle 137 ::::::: :::::::::::::::::::::: d1rhsa1 114 MFRVFGHrTVSVLNGGFRNWLKEGHPVTSE-----------psrpep 149 FAST alignment (Normalized score: 11.35 Raw score:1621.00) query 1 NPNEAYRHYMKKL------SYETDIADLSIDIKKG--YEGIIVVDVR---------DAEA 43 :::::::::::::::: ::::::::: :::: d1rhsa1 1 -------------VHQVLYRALVSTKWLAESVRAGKVGPGLRVLDA-SWYSPGTREARKE 46 query 44 YKECHIPTAISIPGNKI-----------------NEDTTKR--LSKEKVIITYCWGP--- 81 :::::::::::::::: ::::::: :::::::::::: d1rhsa1 47 YLERHVPGASFFDIEE-CRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYDG--DDL 103 query 82 ACNGATKAAAKFAQLG-FRVKELIGGIEYWRKENGEVEGTLGAKADLFWNMKKESLE--- 137 :::::::::::::::: :::::::::::::::::::: d1rhsa1 104 GSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPV--------------------TSE 143 query 138 ------ 138 d1rhsa1 144 PSRPEP 149 TMalign alignment (TM-score: 0.70 Raw score:95.73) query 1 ---NPNEAYRHYMKKLSYETDIADLSIDIKKGY-E-GIIVVDVR--------DAEAYKEC 47 :: :::::::::::::::::: : :::::::: :::::::: d1rhsa1 1 VHQ---------VL-YRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLER 50 query 48 HIPTAISIPGNKI----------------NEDTTKR--LSKEKVIITYCWG-PACNGATK 88 ::::::::::::: ::::::: ::::::::::::: :::::::: d1rhsa1 51 HVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPR 110 query 89 AAAKFAQLGF-RVKELIGGIEYWRKENGEVEGT------LGAKADLFWNMKKESLE 137 :::::::::: :::::::::::::::::::::: d1rhsa1 111 VWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEP----------------- 149 HHsearch alignment (Probability: 1.00 E-value:0.00) query 17 TDIADLSIDIKKG--YEGIIVVDVR--------DAEAYKECHIPTAISIPGNKI------ 60 ::::::::::::: :::::::::: ::::::::::::::::::::: d1rhsa1 10 VSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASP 69 query 61 ------------NEDTTKRLSKEKVIITYCWGPAC-NGATKAAAKFAQLGF-RVKELIGG 106 ::::::::::::::::::::::: ::::::::::::::: :::::::: d1rhsa1 70 YEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGG 129 query 107 IEYWRKENGEVEGTLGAK 124 :::::::::::::::::: d1rhsa1 130 FRNWLKEGHPVTSEPSRP 147
Intermediate <-- 0.716 --> HitDALI alignment (Z-score: 2.1 Raw score:265.60) d1rhsa1 1 ----------vhqvlyralvstKWLAESVRAG---------------------------- 22 :::::::::: d1t5ba_ 1 mskvlvlkssilagysqsgqltDYFIEQWREKhvadeitvrdlaanpvpvldgelvgamr 60 d1rhsa1 23 ---------------------kvgPGLRVLDASWYSpgtrearkeylerhvpgasffDIE 61 :::::::::::: ::: d1t5ba_ 61 dapltprqqdalalsdeliaelkaHDVIVIAAPMYN---------------fniptqLKN 105 d1rhsa1 62 ECRDkaspyevmLPSEAG--fadyvgslgisNDTHVVVYDGDDL------gsFYAPRVWW 113 :::: :::::: ::::::::::::: :::::::: d1t5ba_ 106 YFDL--------IARAGItfrytekgpeglvTGKRAVVLSSRGGihkdtptdLIAPYLKV 157 d1rhsa1 114 MFRVFGHRTVSVLngGFRN---------wLKEGhpvtsepsrpep 149 ::::::::::::: :::: :::: d1t5ba_ 158 FLGFIGITDVNFV--FAEGiaygpevaakAQAD-akaaidsvvaa 199 FAST alignment (Normalized score: 2.40 Raw score:412.90) d1rhsa1 1 VHQVLYRALVSTKWLAESVRAGKVGPG-LRVLDASWYSPGTR------EARKEYLERHV- 52 ::::::::: ::::::: d1t5ba_ 1 ---------------------------MSKVLVLKSS-----ILAGYSQSGQLTD----Y 24 d1rhsa1 53 -----------PGASFFDIEECRDKASPYEVMLP-------------------------- 75 ::::::::: d1t5ba_ 25 FIEQWREKHVADEITVRDLA--------------ANPVPVLDGELVGAMRDAPLTPRQQD 70 d1rhsa1 76 ---SEAGFADYVGSLGI------------------------------------------- 89 ::::::::::: d1t5ba_ 71 ALALSDELIAELKA---HDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGL 127 d1rhsa1 90 SNDTHVVVYDGDDLGS---------FYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPV 140 ::::::::::::: ::::::::::::::::::::: d1t5ba_ 128 VTGKRAVVLSSRG---GIHKDTPTDLIAPYLKVFLGFIGITDVNFV-------------- 170 d1rhsa1 141 TSEPSRPEP----------------------------- 149 d1t5ba_ 171 ---------FAEGIAYGPEVAAKAQADAKAAIDSVVAA 199 TMalign alignment (TM-score: 0.41 Raw score:61.05) d1rhsa1 1 --------------------VHQVLYRALVST--KWLA-ESV-RAG--KVG--------- 25 : :: ::: ::: ::: d1t5ba_ 1 MSKVLVLKSSILAGYSQSGQ-----------LTD--YFIEQWREKHVADEITVRDLAANP 47 d1rhsa1 26 -------------------------------------PGLRVLDASWYSP-GTREARKEY 47 ::::::::::::: ::: d1t5ba_ 48 VPVLDGELVGAMRDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFN---IPT--- 101 d1rhsa1 48 LERHVPGASFFDIEECRDKASPYEVMLPSEAGFA-----------DYVGSLGISNDTHVV 96 :::::::: ::::::: ::::::: d1t5ba_ 102 ----------QLKNYFDL---------IARAGITFRYTEKGPEGL--------VTGKRAV 134 d1rhsa1 97 VYDGD-DLGS----F-YAPRVWWMFRVFGHRTVSVLNGGFR----------NWLKEGHP- 139 ::::: :::: : :::::::::::::::::::: ::: :::::::: d1t5ba_ 135 VLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFV--FAEGIAYGPEVAAKAQADAKAA 192 d1rhsa1 140 -------VTSEPSRPEP 149 d1t5ba_ 193 IDSVVAA---------- 199 HHsearch alignment (Probability: 0.01 E-value:0.25) d1rhsa1 92 DTHVVVYDGDDLGSFYAP-----RVWWMFRVFGHRTVSVLNG 128 :::::::::::::::::: ::::::::::::::::::: d1t5ba_ 131 KRAVVLSSRGGIHKDTPTDLIAPYLKVFLGFIGITDVNFVFA 172