Hit# SCOP Id Protein Name SCOP Superfamily SCOP Fold SCOP Class Comb score SVM score HH prob DALI Z FAST SN TM score SCOP domains with score better than threshold (Comb score > 2.0 OR SVM score > 0.6 OR HH prob > 0.9) 1 d1bm8a_ DNA-binding domain of Mlu1-box binding protein MBP1 DNA-binding domain of Mlu1-box binding protein MBP1 DNA-binding domain of Mlu1-box binding protein MBP1 a+b 36.65 -0.164 -0.164 24.7 26.7 1.00 2 d1l8ra_ Retinal determination protein Dachshund Putative DNA-binding domain Putative DNA-binding domain All a 5.124 -1.038 0.01 5.3 4.6 0.51 3 d1sbxa_ Ski oncogene Putative DNA-binding domain Putative DNA-binding domain All a 4.448 -0.588 0.01 4.3 4.4 0.48 4 d1a79a2 Tetrameric tRNA splicing endonuclease, N-terminal domain tRNA-intron endonuclease N-terminal domain-like MutS N-terminal domain-like a+b 2.799 -0.112 0.01 3.0 4.0 0.40 5 d1tnsa_ mu transposase, DNA-binding domain Putative DNA-binding domain Putative DNA-binding domain All a 2.467 -1.624 0.03 2.3 3.0 0.38 6 d1kafa_ DNA-binding C-terminal domain of the transcription factor MotA DNA-binding C-terminal domain of the transcription factor MotA DNA-binding C-terminal domain of the transcription factor MotA a+b 2.147 -1.135 0.01 3.5 3.7 0.48 SCOP domains with score worse than threshold 7 d1qpma_ mu transposase, DNA-binding domain Putative DNA-binding domain Putative DNA-binding domain All a 1.95 -0.573 0.03 2.2 2.2 0.39 8 d1umwa2 Serine/threonine-protein kinase plk C-terminal domain Polo-box domain Polo-box domain a+b 1.95 -1.287 0.01 2.8 2.8 0.37 9 d1r11a3 Dimeric tRNA splicing endonuclease, domains 1 and 3 tRNA-intron endonuclease N-terminal domain-like MutS N-terminal domain-like a+b 1.86 -1.339 0.00 2.6 3.2 0.37 10 d1jg5a_ GTP cyclohydrolase I feedback regulatory protein, GFRP GTP cyclohydrolase I feedback regulatory protein, GFRP GTP cyclohydrolase I feedback regulatory protein, GFRP a+b 1.77 -1.284 0.01 1.8 2.5 0.41 11 d1jrma_ Hypothetical protein MTH637 YggU-like YggU-like a+b 1.71 -0.944 0.01 1.2 1.4 0.41 12 d1d1ra_ YciH eIF1-like eIF1-like a+b 1.71 -1.552 0.01 2.1 2.9 0.46 13 d1qjta_ Eps15 EF-hand EF Hand-like All a 1.69 -0.944 0.01 1.8 2.8 0.38 14 d1r0va3 Dimeric tRNA splicing endonuclease, domains 1 and 3 tRNA-intron endonuclease N-terminal domain-like MutS N-terminal domain-like a+b 1.68 -1.022 0.01 1.8 3.1 0.38 15 d1xpaa1 DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain Putative DNA-binding domain Putative DNA-binding domain All a 1.63 -1.221 0.01 1.5 2.6 0.37 16 d1h3fa2 Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain Alpha-L RNA-binding motif Alpha-L RNA-binding motif a+b 1.61 -0.501 0.02 1.1 1.9 0.37