HHsearch 1.2 NAME 1dom FAM FILE 1dom.5 COM /usr1/HorAServer/local/hhsearch1.5_2/hhmake -i 1dom.5.fas DATE Wed Mar 23 14:15:00 2011 LENG 77 match states, 77 columns in multiple alignment FILT 538 out of 540 sequences passed filter (max seq id>=90%, coverage>=0%, min seq id with query=0%, Ndiff=0) NEFF 4.3 EVD 0.4139 4.7361 SEQ >ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >ss_conf 97556899999996189997899863899879999999987523222027885202775557667654426766789 >Consensus PxYxxLDxILxxxiExxxsxxeIixxGxxxxxVxxVxxlixxsEyKRrQappgxkisxraFGxdrRxPItxxxrexx >1dom PDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH >gi|143684581|gb|EDG26249.1|(155-227:229) hypothetical protein GOS_812282 [marine metagenome] PPYEILDSILRLHMEEGLDADAISGTGLNIALISDLLLRFANNEHKRWQMSPSPRVSKRAFGQGWRQPLAAK----- >gi|76800682|ref|YP_325690.1|(215-270:270) NAD(+) synthase (glutamine-hydrolyzing) 2 [Natronomonas pharaonis DSM 2160] -PYTTVDAVLKRLVADDRTTDAICSEGVDAAVVDRVKRHHEQTAHKRRRPPPSVR---------------------- >gi|140428188|gb|ECL68712.1|(189-263:265) hypothetical protein GOS_5898959 [marine metagenome] PPYDILDDILEGLIEHDLSVSELVKKGHLESMVKEIEKLIYSSEYKRYQSAPGVHLTERSFWLGRRYPIVQDWRD-- >gi|110668487|ref|YP_658298.1|(481-556:561) NAD(+) synthase (glutamine-hydrolyzing) [Haloquadratum walsbyi DSM 16790] PPYEITDAVVSQYVGDKYPLTQIVEENATKEQVKTVVENITQSEFKRKQTPPALRVTTKAFDSGWRYPIAASYDE-- >gi|67919127|ref|ZP_00512713.1|(207-277:283) NAD+ synthase [Chlorobium limicola DSM 245] --YEDADSILYMMLEKRMDRQSMLAEGVPAAFYDRVRKMVVSNQYKR-MMPVIAKISGRTPGIDFRY--ARDWQEN- >gi|78777049|ref|YP_393364.1|(199-253:257) NAD(+) synthase [Thiomicrospira denitrificans ATCC 33889] --YSQLDKVLKLYIEEQLSREKILEMGYDAKMLDMIIERNLRNQFK------------------------------- >gi|137894503|gb|EBW61168.1|(200-268:268) hypothetical protein GOS_6719343 [marine metagenome] --YEELDCVLFEL-ERFHSISQVEKTGISIEKIGKIKGLIQASIHKRV-FPPVCKIGLRTVGLDWRETIGSR----- >gi|135196705|gb|EBG11124.1|(198-240:251) hypothetical protein GOS_9488106 [marine metagenome] --YKEVDPIIK-YMEQGMSKDDIITKGINPNSVHKVFRLAELNKHK------------------------------- >gi|55379147|ref|YP_136997.1|(221-273:277) NH(3)-dependent NAD(+) synthetase [Haloarcula marismortui ATCC 43049] -DYDTLDSILALHIDGGVPAAGTADQGVPLDVVETVREMYESSAHKR-AMPPGP----------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4938 4285 4423 3815 3783 6325 4665 AVER 4020 8037 3901 3732 4888 4120 5596 3677 3812 3674 6016 4982 4000 4888 3371 4258 5056 3936 6424 4226 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 3962 0 0 D 2 4937 7289 1604 3394 * 7300 * * 5580 * * 6543 1188 7702 * 4298 7780 * * * 2 0 * * * * * * 4185 0 0 Y 3 * * * * * * * * * * * * * * * * * * * 0 3 0 * * * * * * 4468 0 0 P 4 3682 * 1799 1495 7604 6800 6455 8570 4486 9067 * 5135 3757 7265 5825 4219 5557 8066 * * 4 0 * * * * * * 4468 0 0 V 5 6161 * 4744 3132 6900 * * 1932 4928 3512 7979 * * 5052 5409 * 3443 1782 * 8258 5 0 * * * * * * 4468 0 0 L 6 5834 * * * * * * 3626 * 245 6912 * * * * * 7249 4555 * * 6 0 * * * * * * 4467 0 0 D 7 7271 * 84 * * * * * * * * * * * * 4320 * * * * 7 0 * * * * * * 4467 0 0 A 8 2126 5981 4275 3258 6905 4308 7066 7390 3172 6108 7748 6222 2768 3760 4361 3878 5401 5615 * 9146 8 0 * * * * * * 4467 0 0 I 9 6867 * * * 7973 * 7757 488 * 3242 5026 * * * * * * 2906 * * 9 0 * * * * * * 4424 0 0 L 10 * 7658 * * * * * 3419 * 357 5464 * * * * * * 3348 * * 10 0 * * * * * * 4422 0 0 E 11 4353 8212 3838 2228 4327 7669 4058 7026 2809 6317 6261 5094 * 4131 3802 4052 4590 6223 8872 3349 11 5 * 8170 * * * * 4422 0 0 L 12 2797 5489 4049 5050 8054 3488 5218 4867 4988 1990 3827 6107 * 5364 3015 4673 * 7543 6642 5757 12 11 * 6994 * * 0 * 4420 0 1000 Y 13 8690 * * * 4643 * 3430 3752 6827 1498 5333 7626 * * 6549 8392 * 7695 7064 1427 13 29 * 5644 * * 0 * 4421 0 1000 V 14 * 5735 * * 5098 * * 1079 * 3933 4376 * * * * * 7094 1483 * * 14 0 * * * * 0 * 4396 0 1993 D 15 6821 * 2489 485 8156 6928 7099 6027 7482 7720 * 6064 * 6739 * 5969 8933 6454 * * 15 0 * * * * * * 4431 0 0 R 16 7710 7081 3310 2109 7995 3964 4209 * 2549 4186 8632 3644 * 3016 3867 6359 7111 * * 6244 16 0 * * * * * * 4433 0 0 D 17 6556 7023 1839 3335 5105 3132 4418 * 4008 6853 4507 3236 7311 4702 3489 5316 6234 * 7351 6165 17 18 * 6311 * * * * 4433 0 0 T 18 3705 5929 7360 3843 5129 3934 5559 5229 2946 2367 3272 * * 3516 3745 5451 6792 5506 6759 4756 18 0 * * * * * 0 4406 0 1499 G 19 5545 8766 3201 5616 * 3142 8189 * * 6848 * 4809 3899 * * 945 3389 7867 * * 19 0 * * * * 853 1163 4406 0 1499 A 20 2824 8430 7900 4992 5232 5797 6680 2772 4517 3038 8918 7584 2966 5978 3984 4781 5277 2582 9046 6825 20 5 * 8133 * * * 0 4478 0 1000 D 21 2993 8996 2680 1924 6649 6047 4990 7618 3379 6833 * 4483 6054 3817 6248 3510 4406 7441 * 9237 21 6 * 7952 * * * 0 4473 0 1513 A 22 3596 * 2658 1282 6568 6649 8737 8485 4183 6372 7982 5924 * 3286 5880 3728 5074 6655 * * 22 13 * 6776 * * 1697 532 4471 0 1965 I 23 5436 4922 * 7579 * * * 706 * 2192 5233 * * * * * 5707 4182 7427 * 23 14 * 6673 * * 1390 693 4461 0 1972 V 24 3453 5890 6931 4063 7543 * 7776 1670 5545 3956 6347 * 8275 7132 6046 5363 4807 1738 * 5942 24 0 * * * * 2027 406 4404 0 2501 A 25 1530 * 4349 2794 * 4949 8438 8603 2870 5571 * 3630 * 4287 4750 3677 6507 7279 * * 25 7 * 7707 * * * 0 4405 0 2320 A 26 2599 9200 4293 2978 7696 8762 5179 5200 2704 4522 4210 5279 7517 3798 3575 3454 4321 8300 * 6523 26 28 * 5690 * * 2338 318 4398 0 2478 G 27 5658 * 6679 8394 * 219 7848 8567 6059 6909 * 4896 * 7378 * 4911 * * 7531 * 27 15 * 6595 * * 518 1729 4383 0 3182 Y 28 5734 8830 * 6021 1351 7124 2839 3649 6260 4130 8995 8628 * * 7026 6659 6543 4026 8006 2500 28 0 * * * * 284 2486 4396 0 2811 D 29 4255 * 1301 2510 * 5920 6595 * 5390 6075 * 3627 3496 6743 6696 3504 5507 8961 * * 29 0 * * * * * 0 4469 0 1000 R 30 3211 * 6375 2525 7038 6310 5980 4483 2509 4884 * 6262 3375 5890 2592 3738 6667 5995 * 5426 30 5 * 8228 * * 0 * 4469 0 1000 E 31 2487 * 2540 1869 9194 5448 7117 * 3419 9155 * 3933 5457 4517 6766 3957 4874 6756 * * 31 0 * * * * * 0 4433 0 1000 L 32 5626 * 3413 4087 4960 * 7555 3250 4579 1919 4866 6231 * 6385 * 5967 2449 3122 8450 9138 32 4 * 8531 * * 0 * 4433 0 1000 V 33 4837 8052 * 6888 * * * 2908 * 4966 * * * * * * 7790 378 * 6225 33 0 * * * * 0 * 4480 0 1000 V 34 4683 7523 3175 2810 7120 5640 4789 4815 2524 5263 5752 3936 * 4305 3110 4292 4903 4717 * 5025 34 5 * 8180 * * * * 4433 0 0 K 35 8918 9358 3139 4683 6771 7403 5740 * 1820 6384 5471 5266 * 4644 1594 5257 5072 8718 5390 6250 35 0 * * * * 0 * 4428 0 1000 T 36 5240 * * * * 8691 * 1585 * 5081 7805 7144 * * * * 5356 805 * * 36 0 * * * * * * 4433 0 0 L 37 4226 6357 6602 3545 6162 * 6901 2505 4404 2341 5033 8074 * 4745 5224 4312 4316 3008 4821 4761 37 0 * * * * * * 4433 0 0 R 38 4535 8991 5449 3982 * 4827 4076 8640 2576 7131 7661 2913 6896 3768 1807 4787 4391 * 8558 7639 38 0 * * * * * * 4433 0 0 M 39 6627 * * * * * 7259 * 3389 742 2714 7275 * 7037 3210 8521 7805 6896 * * 39 0 * * * * * * 4433 0 0 V 40 8171 * * * 5336 * 6426 1685 * 2098 6897 7242 * * * * 7827 1469 * 4844 40 0 * * * * * * 4433 0 0 D 41 4626 8054 2092 4112 4415 6959 5479 6402 2752 5334 5627 4176 * 3997 3301 5641 5943 6151 * 3172 41 0 * * * * * * 4433 0 0 T 42 4339 8027 9189 9102 5013 5746 7272 2764 2754 3103 7369 3884 * 4354 1973 5045 4864 5335 * 6873 42 0 * * * * * * 4433 0 0 A 43 2184 7868 * * 8583 * 7857 * * * 5994 1383 * * * 1545 5599 8660 * 8026 43 0 * * * * * * 4433 0 0 E 44 5060 * * 207 * * 7540 6240 6311 * * * * 4326 6604 6328 * * * * 44 0 * * * * * * 4433 0 0 Y 45 * * * * 2140 * 2663 * * * * * * * * * * * 5396 758 45 0 * * * * * * 4433 0 0 K 46 * * * * * * * * 0 * * * * * * * * * * * 46 9 * 7326 * * * * 4433 0 0 R 47 * * * * * * * * * 5799 * * * * 26 * * * * * 47 59 * 4636 * * 0 * 4418 0 1000 R 48 7735 * 6773 8294 3425 * 6517 * 3400 * 6913 6467 * 5468 819 4589 * 5329 4084 4332 48 83 * 4155 * * 138 3455 4355 0 2875 Q 49 7795 * * 6489 * * * * * 5038 5740 * 7891 123 6906 * * * * 7753 49 0 * * * * 106 3821 4337 0 3680 Y 50 1148 8131 * * 5384 4265 * * * 4639 3373 7600 5400 * * 2347 4812 5237 * 4470 50 0 * * * * 0 * 4420 0 1000 P 51 1401 4752 * * * * * * * * * * 900 * * 5359 * 6040 * 6820 51 0 * * * * * * 4418 0 0 P 52 * 6730 * 5815 7668 * * 3117 * 4403 * * 495 * * * 6983 3510 * * 52 13 * 6796 * * * * 4408 0 0 G 53 4091 * * * 8000 548 * 3137 * 5555 7815 * 7290 * * 4928 6563 3966 * * 53 0 * * * * 0 * 4399 0 1000 T 54 4150 5904 * * 5495 * * 3290 * 2116 * * 1819 * * * 4086 2123 * * 54 0 * * * * * * 4408 0 0 K 55 * * 6730 * * 7615 5846 6361 802 * * 8356 * 6959 1464 * * 6866 * * 55 0 * * * * * * 4392 0 0 I 56 * * * * * * * 1402 * 2504 5639 * * * * * 6446 1273 * * 56 0 * * * * * * 4377 0 0 S 57 * * * * * 4082 * * 6204 * * 7019 * * 4981 999 1401 7562 * 8086 57 0 * * * * * * 4377 0 0 A 58 3609 8555 4377 3841 * 4117 4748 7943 3189 5097 7539 3767 3202 4214 3717 2617 4314 5514 * 7134 58 0 * * * * * * 4377 0 0 K 59 * 7815 * 7279 * 7195 5513 6533 1633 4953 4902 6373 * 4484 1098 * * 4745 * * 59 0 * * * * * * 4341 0 0 G 60 729 7135 6240 * * 3796 * * * 7809 7182 3808 6435 * * 2846 3813 * * * 60 0 * * * * * * 4327 0 0 F 61 * * * * 172 * * 4656 * 5090 * * 6554 * * * * 5195 * 7601 61 0 * * * * * * 4302 0 0 G 62 6627 * 4624 6837 * 340 * * 8310 * * 4730 * 7511 7826 5185 6446 6669 4295 * 62 0 * * * * * * 4303 0 0 K 63 7641 8189 * 9014 5462 8473 8023 4167 2465 3413 4686 6701 6887 4272 1798 3162 3930 4467 * 6543 63 0 * * * * * * 4303 0 0 D 64 7563 * 841 4144 * 1509 * 6836 * * * * * * * 5667 * * * * 64 0 * * * * * * 4303 0 0 R 65 * * * 6835 5250 * 6803 * * 6235 * * * * 571 * * * 1926 7322 65 0 * * * * * * 4300 0 0 R 66 * * 6835 * * * 8156 * 6565 * 7716 7526 * 4992 117 6235 * * * * 66 0 * * * * * * 4299 0 0 L 67 * * * 5750 3466 * 6009 3606 7343 2938 3208 7948 * 5335 5495 * 8005 4439 8375 1170 67 16 * 6500 * * * * 4289 0 0 P 68 * * * * * * * * * 6145 * * 50 * * * 5632 * * * 68 0 * * * * * 0 4151 0 1000 I 69 * * * * * * * 421 * 2739 5111 7718 * * * * * 3846 * * 69 0 * * * * 0 * 4079 0 1000 T 70 2190 * * 8210 * 5195 * 4900 * 5922 * * * * * 5034 1125 2242 * * 70 1 * 9993 * * * * 4134 0 0 N 71 3604 7495 * * * 6505 4192 * 5686 * 7741 1114 * 4016 5225 1947 7427 * 7240 * 71 0 * * * * * 0 4129 0 1000 R 72 3983 8627 4995 7074 8529 2649 3515 * 2116 8095 * 3846 * 5354 2003 4606 5689 * 7699 8510 72 3 * 8906 * * 0 * 4087 0 1000 W 73 6283 * * * 1512 * * * * * 7654 * * * * * * * 1440 1928 73 0 * * * * 0 * 3936 0 1000 R 74 6122 * 4614 8146 7622 * 6220 * 2257 * 7587 5469 7528 3373 882 5365 6194 8196 * * 74 0 * * * * * * 3795 0 0 E 75 5754 * 1602 1002 * 6965 * 5819 * 6085 7747 * 4754 5350 7768 6043 5729 7082 * * 75 0 * * * * * * 3708 0 0 G 76 4423 * * 5537 * 913 * * * * * 2624 * * 5164 2247 * * * * 76 0 * * * * * * 3174 0 0 H 77 * * * * * * 1385 * * * * * * * * * * * * 697 77 0 * * 0 * * * 2467 0 0 //