Hit# SCOP Id Protein Name SCOP Superfamily SCOP Fold SCOP Class Comb score SVM score HH prob DALI Z FAST SN TM score SCOP domains with score better than threshold (Comb score > 2.0 OR SVM score > 0.6 OR HH prob > 0.9) 1 d1rhsa2 Rhodanese Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.80 2.232 2.232 13.2 11.2 0.72 2 d1rhsa1 Rhodanese Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.58 1.954 1.954 12.9 11.3 0.70 3 d1e0ca2 Sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.52 1.850 1.850 13.8 11.2 0.70 4 d1uara1 Sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.48 2.019 2.019 12.6 10.9 0.70 5 d1urha1 3-mercaptopyruvate sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.47 1.652 1.652 12.9 11.4 0.70 6 d1e0ca1 Sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.42 1.836 1.836 12.9 11.2 0.67 7 d1gmxa_ Sulfurtransferase GlpE Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.39 1.662 1.662 13.4 11.4 0.65 8 d1uara2 Sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 10.05 1.602 1.602 12.9 10.8 0.68 9 d1okga1 3-mercaptopyruvate sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 9.81 2.114 2.114 10.8 9.7 0.66 10 d1qb0a_ CDC25b Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 9.47 2.077 2.077 11.9 8.1 0.73 11 d1qxna_ Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 9.27 1.002 1.002 10.4 8.7 0.61 12 d1urha2 3-mercaptopyruvate sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 8.03 2.148 2.148 9.7 9.1 0.59 13 d1okga2 3-mercaptopyruvate sulfurtransferase Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 7.94 2.367 2.367 9.0 7.5 0.60 14 d1t3ka_ Dual specificity phosphatase Cdc25 Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 5.95 1.593 1.593 4.6 3.6 0.52 15 d1tq1a_ Thiosulfate sulfurtransferase/Senescence-associated protein Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 5.66 1.577 1.577 3.7 4.0 0.46 16 d1hzma_ Erk2 binding domain of Mapk phosphatase mkp-3 Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase a/b 4.04 0.429 0.429 2.8 2.3 0.48 17 d1t6t1_ Hypothetical protein aq 2086 Toprim domain (Pfam 01751) Toprim domain (Pfam 01751) a/b 2.85 0.808 4.8 4.6 0.48 0.05 18 d1j7ja_ Hypoxanthine PRTase PRTase-like PRTase-like a/b 1.92 0.773 3.7 3.2 0.48 0.01 19 d1a3ca_ Pyrimidine operon regulator PyrR PRTase-like PRTase-like a/b 1.90 0.879 3.8 3.1 0.49 0.01 20 d1l1qa_ Adenine PRTase PRTase-like PRTase-like a/b 1.85 0.885 3.5 3.1 0.46 0.04 21 d1hgxa_ Hypoxanthine-guanine-xanthine PRTase PRTase-like PRTase-like a/b 1.78 0.872 3.7 2.9 0.47 0.01 22 d1vdda_ Recombination protein RecR Recombination protein RecR Recombination protein RecR multi 1.76 0.625 3.9 3.0 0.30 0.01 23 d1d5ra2 Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 1.75 0.716 2.6 2.4 0.43 0.42 24 d1o5oa_ Uracil PRTase, Upp PRTase-like PRTase-like a/b 1.74 0.913 3.4 2.8 0.48 0.01 25 d1jlra_ Uracil PRTase, Upp PRTase-like PRTase-like a/b 1.63 1.093 3.0 2.2 0.49 0.01 26 d1nuia1 Primase fragment of primase-helicase protein DNA primase core DNA primase core multi 1.57 0.627 3.5 2.8 0.42 0.01 27 d1d3ya_ DNA topoisomerase IV, alpha subunit DNA topoisomerase IV, alpha subunit DNA topoisomerase IV, alpha subunit multi 1.47 0.619 2.9 2.3 0.44 0.01 28 d1mwma2 Plasmid segregation protein ParM Actin-like ATPase domain Ribonuclease H-like motif a/b 1.32 1.578 2.3 2.5 0.26 0.01 29 d1mkpa_ Mapk phosphatase (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 1.24 1.120 2.0 2.2 0.40 0.29 30 d1uwca_ Feruloyl esterase A alpha/beta-Hydrolases alpha/beta-Hydrolases a/b 1.24 0.837 2.1 2.1 0.43 0.03 31 d1i9sa_ mRNA capping enzyme, triphosphatase domain (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 1.20 0.653 1.8 2.0 0.41 0.22 32 d1yaca_ YcaC Isochorismatase-like hydrolases Isochorismatase-like hydrolases a/b 1.18 1.012 2.6 2.4 0.43 0.09 33 d1ecfa1 Glutamine PRPP amidotransferase, C-terminal domain PRTase-like PRTase-like a/b 1.18 0.985 2.5 2.5 0.46 0.01 34 d1fpza_ Kinase associated phosphatase (kap) (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 1.17 -1.353 -1.353 1.9 1.3 0.37 35 d1hf2a2 Cell-division inhibitor MinC, N-terminal domain Cell-division inhibitor MinC, N-terminal domain Cell-division inhibitor MinC, N-terminal domain a/b 1.17 0.617 2.3 3.3 0.35 0.01 36 d1im5a_ Pyrazinamidase/nicotinamidase Isochorismatase-like hydrolases Isochorismatase-like hydrolases a/b 1.05 0.715 2.8 3.0 0.24 0.05 37 d1g4us2 SptP tyrosine phosphatase, catalytic domain (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 1.03 0.619 1.7 2.2 0.41 0.16 38 d1lw3a2 Myotubularin-related protein 2, C-terminal domain (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 1.02 1.395 1.6 1.9 0.46 0.02 39 d1dd9a_ DNA primase DnaG catalytic core DNA primase core DNA primase core multi 1.01 0.621 3.1 2.3 0.30 0.03 40 d1t6ca2 Exopolyphosphatase Ppx Actin-like ATPase domain Ribonuclease H-like motif a/b 1.00 0.711 1.3 2.6 0.38 0.01 41 d1mnaa_ Picromycin polyketide synthase alpha/beta-Hydrolases alpha/beta-Hydrolases a/b 0.97 0.995 2.4 2.4 0.46 0.08 42 d1gkub3 Topoisomerase (domain( of reverse gyrase Prokaryotic type I DNA topoisomerase Prokaryotic type I DNA topoisomerase multi 0.96 0.622 3.5 1.6 0.48 0.01 43 d8abpa_ L-arabinose-binding protein Periplasmic binding protein-like I Periplasmic binding protein-like I a/b 0.95 0.730 3.5 2.8 0.44 0.04 44 d1p3da2 UDP-N-acetylmuramate-alanine ligase MurC MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain a/b 0.95 0.989 2.2 2.1 0.40 0.02 45 d1lyva_ Protein-tyrosine phosphatase YopH, catalytic domain (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 0.92 0.618 1.4 2.1 0.43 0.11 46 d2shpa1 Tyrosine phosphatase (Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II a/b 0.86 0.903 1.6 1.9 0.29 0.13 47 d1vdra_ Dihydrofolate reductase, prokaryotic type Dihydrofolate reductases Dihydrofolate reductases a/b 0.81 0.622 0.8 1.8 0.37 0.01 48 d1t64a_ Histone deacetylase 8, HDAC8 Arginase/deacetylase Arginase/deacetylase a/b 0.80 0.622 1.3 1.8 0.49 0.01 49 d1rjda_ Leucine carboxy methyltransferase Ppm1 S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases a/b 0.78 0.618 1.3 2.1 0.44 0.01 50 d1d4oa_ Transhydrogenase domain III (dIII) DHS-like NAD/FAD-binding domain DHS-like NAD/FAD-binding domain a/b 0.72 0.640 2.0 1.2 0.45 0.05 51 d1qj4a_ Hydroxynitrile lyase alpha/beta-Hydrolases alpha/beta-Hydrolases a/b 0.69 0.620 2.0 1.4 0.39 0.04 52 d1qx4a2 cytochrome b5 reductase Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain a/b 0.69 0.666 1.2 2.2 0.32 0.02 53 d1mw9x_ DNA topoisomerase I, 67K N-terminal domain Prokaryotic type I DNA topoisomerase Prokaryotic type I DNA topoisomerase multi 0.63 0.621 3.1 1.3 0.27 0.01 54 d4cd2a_ Dihydrofolate reductases, eukaryotic type Dihydrofolate reductases Dihydrofolate reductases a/b 0.58 0.618 0.8 1.7 0.34 0.01 55 d1t5ba_ ACP phosphodiesterase AcpD Flavoproteins Flavodoxin-like a/b 0.44 0.735 1.6 2.3 0.38 0.01 56 d1i7da_ DNA topoisomerase III Prokaryotic type I DNA topoisomerase Prokaryotic type I DNA topoisomerase multi 0.33 0.620 2.8 0.5 0.26 0.01 57 d1ne7a_ Glucosamine 6-phosphate deaminase/isomerase NagB NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like a/b 0.29 0.865 0.8 1.0 0.33 0.01 SCOP domains with score worse than threshold 58 d1puja_ Probable GTPase YlqF P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases a/b 1.71 -1.039 0.04 3.5 2.6 0.33 59 d1g2qa_ Adenine PRTase PRTase-like PRTase-like a/b 1.67 0.457 0.01 3.2 3.1 0.46 60 d1bzya_ Hypoxanthine-guanine PRTase (HGPRTase) PRTase-like PRTase-like a/b 1.63 0.516 0.01 3.6 3.2 0.49 61 d1qz5a1 Actin Actin-like ATPase domain Ribonuclease H-like motif a/b 1.60 -1.424 0.01 2.6 3.3 0.28 62 d1fsga_ Hypoxanthine-guanine-xanthine PRTase PRTase-like PRTase-like a/b 1.60 0.448 0.01 3.2 3.0 0.52 63 d1lu9a2 Methylene-tetrahydromethanopterin dehydrogenase Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain a/b 1.56 -1.692 0.01 3.8 3.7 0.39 64 d1cqxa3 Flavohemoglobin, C-terminal domain Ferredoxin reductase-like, C-terminal NADP-linked domain Ferredoxin reductase-like, C-terminal NADP-linked domain a/b 1.55 0.571 0.04 3.2 2.7 0.42 65 d1qb7a_ Adenine PRTase PRTase-like PRTase-like a/b 1.54 -1.150 0.01 2.8 2.8 0.47 66 d1a1va1 HCV helicase domain P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases a/b 1.53 -1.478 0.03 2.5 3.2 0.43 67 d1tc1a_ Hypoxanthine PRTase PRTase-like PRTase-like a/b 1.49 0.564 0.01 3.7 2.7 0.48