Ankyrin repeat domain 54; Lyn-interacting ankyrin repeat protein
UniProt
Show FASTA Format
>gi|220938243|emb|CAX15610.1| ankyrin repeat domain 54 [Mus musculus]
MAATGGGADDESRSGRSSSDGECAVAPEPLAEAGGLVSFADFGVSLGSGAGLPGRSVGRAQSSLRYLQVL
WQQDVEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDVETVQQLLEDGADPCAADD
KGRTALHFASCNGNDQIVQLLLDHGADPNQQDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRT
PLHLAKSKLNILQEGHSQCLEAVRLEVKQIIHMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVT
DLLASFTSLSLQMQSMEKR
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 956889999545689999977644589961110101110466776789999994321345
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCC
AA: MAATGGGADDESRSGRSSSDGECAVAPEPLAEAGGLVSFADFGVSLGSGAGLPGRSVGRA
10 20 30 40 50 60
Conf: 783589999984799999844446774122331034632599802211042479998319
Pred: CCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHCC
AA: QSSLRYLQVLWQQDVEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANAN
70 80 90 100 110 120
Conf: 999999999769998776689996356885269999999998589999999999985466
Pred: CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
AA: DVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQQDGLGNTPLH
130 140 150 160 170 180
Conf: 863219947899999689998854448998136764113044207149999999821119
Pred: HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHH
AA: LAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHSQCLEAVRLEVKQI
190 200 210 220 230 240
Conf: 99999998773344542011211001110157888548999984699875333234469
Pred: HHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
AA: IHMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQSMEKR
250 260 270 280 290
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 A -1.000 *
4 T -1.000 *
5 G 1.191
6 G 0.861
7 G -0.296
8 A 0.212
9 D 1.423
10 D -0.459
11 E 0.142
12 S -0.111
13 R 0.147
14 S -0.036
15 G 0.479
16 R -1.000 *
17 S -1.000 *
18 S -1.000 *
19 S -1.000 *
20 D -1.000 *
21 G -1.000 *
22 E -1.000 *
23 C -1.000 *
24 A -1.000 *
25 V -1.000 *
26 A -1.000 *
27 P 0.658
28 E 0.921
29 P 0.115
30 L -1.030
31 A 0.792
32 E -0.203
33 A -1.303
34 G -1.001
35 G 0.726
36 L -0.633
37 V -0.767
38 S -0.122
39 F 0.094
40 A -0.200
41 D -0.408
42 F -0.426
43 G 1.124
44 V 0.758
45 S -0.418
46 L -1.058
47 G 0.867
48 S 0.669
49 G 0.097
50 A -0.712
51 G 0.311
52 L -1.250
53 P 0.607
54 G 0.678
55 R 0.803
56 S -0.442
57 V -1.160
58 G 1.155
59 R -0.104
60 A -1.244
61 Q -1.116
62 S 0.508
63 S -0.407
64 L -0.715
65 R 0.129
66 Y -0.114
67 L 0.943
68 Q -0.230
69 V -0.301
70 L 2.311
71 W 0.399
72 Q -0.129
73 Q -0.661
74 D 0.347
75 V -0.150
76 E -0.164
77 P -0.643
78 R -0.739
79 D -0.219
80 E -0.900
81 L -0.533
82 R -1.158
83 C -0.862
84 K 0.358
85 I -0.048
86 P -1.113
87 A -1.383
88 G 0.082
89 R -0.521
90 L -1.177
91 R -0.896
92 R -0.860
93 A -0.964
94 A -0.856
95 R -0.628
96 P -0.582
97 H -0.913
98 R -0.434
99 R -0.829
100 L 0.542
101 G -0.353
102 P -0.522
103 T -0.674
104 G -0.610
105 K -0.506
106 E -0.238
107 V -0.771
108 H -0.558
109 A 0.447
110 L -0.986
111 K 1.008
112 R 0.665
113 L 2.391
114 R 0.264
115 D -1.140
116 S 2.157
117 A 1.079
118 N -1.264
119 A -1.110
120 N 0.729
121 D -0.191
122 V -0.885
123 E -0.118
124 T 0.106
125 V 0.986
126 Q -0.502
127 Q -0.651
128 L 3.164
129 L 1.593
130 E -0.439
131 D -0.976
132 G 1.051
133 A 1.236
134 D -0.786
135 P 0.339
136 C 0.175
137 A -0.842
138 A -0.522
139 D -0.127
140 D -0.449
141 K -0.932
142 G 0.361
143 R -1.243
144 T 2.191
145 A 1.904
146 L 2.543
147 H 0.442
148 F -0.994
149 A 2.141
150 S 1.263
151 C -1.187
152 N -1.027
153 G 1.468
154 N -0.025
155 D -0.920
156 Q -0.164
157 I 0.665
158 V 1.325
159 Q -0.322
160 L -0.323
161 L 3.314
162 L 1.941
163 D -0.172
164 H -0.771
165 G 0.777
166 A 2.400
167 D -0.272
168 P 0.318
169 N 0.239
170 Q -0.845
171 Q -0.748
172 D 0.153
173 G -0.602
174 L -0.767
175 G 0.723
176 N -1.184
177 T 2.482
178 P 1.818
179 L 3.466
180 H 0.289
181 L -1.233
182 A 1.957
183 A 0.796
184 C -1.182
185 T -0.851
186 N 1.068
187 H 0.291
188 V -0.911
189 P 0.141
190 V 0.754
191 I 1.078
192 T -0.066
193 T -0.252
194 L 3.300
195 L 1.123
196 R -0.476
197 G -0.460
198 G 1.366
199 A 1.537
200 R -0.502
201 V 0.236
202 D -0.153
203 A -0.748
204 L -0.567
205 D 0.051
206 R -0.526
207 A -0.971
208 G 0.336
209 R -1.304
210 T 1.088
211 P 1.412
212 L 1.400
213 H -0.364
214 L -0.966
215 A 1.991
216 K -0.009
217 S -1.205
218 K -0.823
219 L -1.000 *
220 N -1.000 *
221 I -1.000 *
222 L -1.000 *
223 Q -0.277
224 E -0.702
225 G 0.194
226 H -0.727
227 S -0.893
228 Q -0.443
229 C -0.318
230 L -0.027
231 E -0.972
232 A -0.624
233 V -0.043
234 R -1.029
235 L -0.995
236 E -0.670
237 V -0.849
238 K -1.078
239 Q -0.247
240 I -0.347
241 I -0.632
242 H -0.891
243 M -1.072
244 L -0.454
245 R -0.741
246 E -0.681
247 Y -0.761
248 L -0.717
249 E -0.429
250 R -0.701
251 L -0.888
252 G -0.256
253 R -1.044
254 H -0.314
255 E -0.605
256 Q -0.862
257 R -0.874
258 E -0.584
259 R -0.818
260 L -0.671
261 D -0.025
262 D -0.582
263 L 0.162
264 C -1.199
265 T 1.737
266 R 0.577
267 L 2.202
268 Q 0.203
269 M -1.135
270 T 2.030
271 S 0.252
272 T -1.219
273 K -0.697
274 E 1.014
275 Q -0.099
276 V -0.724
277 D 0.344
278 E -0.073
279 V 1.107
280 T -0.249
281 D -0.522
282 L 2.505
283 L 1.735
284 A -0.345
285 S -0.647
286 F 0.193
287 T 1.706
288 S -0.197
289 L 0.337
290 S 0.575
291 L -1.000 *
292 Q -1.000 *
293 M -1.000 *
294 Q -1.000 *
295 S -1.000 *
296 M -1.000 *
297 E -1.000 *
298 K -1.000 *
299 R -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 116.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MAATGGGADD ESRSGRSSSD GECAVAPEPL AEAGGLVSFA DFGVSLGSGA GLPGRSVGRA
70 80 90 100 110 120
QSSLRYLQVL WQQDVEPRDE LRCKIPAGRL RRAARPHRRL GPTGKEVHAL KRLRDSANAN
130 140 150 160 170 180
DVETVQQLLE DGADPCAADD KGRTALHFAS CNGNDQIVQL LLDHGADPNQ QDGLGNTPLH
190 200 210 220 230 240
LAACTNHVPV ITTLLRGGAR VDALDRAGRT PLHLAKSKLN ILQEGHSQCL EAVRLEVKQI
250 260 270 280 290
IHMLREYLER LGRHEQRERL DDLCTRLQMT STKEQVDEVT DLLASFTSLS LQMQSMEKR
Liar forms a multiprotein complex with Lyn and HS1 in erythroid cells. Lyn is the most abundant Src family kinase present in erythroid cells and is involved in Epo-signaling cascades. Liar has a putative NLS (aa 98-111) and a putative NES (aa 282-291).
[1]. "Liar, a novel Lyn-binding nuclear/cytoplasmic shuttling protein that influences erythropoietin-induced differentiation."
Samuels AL, Klinken SP, Ingley E (2009)
Blood,
113:3845-56
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.