NESdb

COMM domain-containing protein 1 UniProt

Protein Murr1; Copper metabolism MURR1 domain1

Homo sapiens (Human)

LMB Sensitive ^{Ref.1Nuclear-cytosolic transport of COMMD1 regulates NF-kappaB and HIF-1 activity., Mueller et al., Traffic, 2009}

*highlighted yellow in the full sequence

I145A/L147A/L149A, L172A/L175A/V178A ^{Ref.1Nuclear-cytosolic transport of COMMD1 regulates NF-kappaB and HIF-1 activity., Mueller et al., Traffic, 2009}

Unknown

*shown as underlined residues in the full sequence

¹³⁸IHTPVAIIELELGK¹⁵¹, ¹⁶⁵EVKVNQILKTLSEVEES¹⁸¹ ^{Ref.1Nuclear-cytosolic transport of COMMD1 regulates NF-kappaB and HIF-1 activity., Mueller et al., Traffic, 2009}

Unknown

Show FASTA Format

>gi|51316026|sp|Q8N668.1|COMD1_HUMAN RecName: Full=COMM domain-containing protein 1; AltName: Full=Protein Murr1
MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFN
QLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHT
PVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEESISTLISQPN

Show Domain Info by CDD

Show Secondary Structure by PSIPRED

    	# PSIPRED HFORMAT (PSIPRED V3.2)

Conf: 987755687007989989986441599998488898530899997639999999999999
Pred: CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
  AA: MAAGELEGGKPLSGLLNALAQDTFHGYPGITEELLRSQLYPEVPPEEFRPFLAKMRGILK
              10        20        30        40        50        60


Conf: 998326998799999989754518999999999999999622899999986123689978
Pred: HHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
  AA: SIASADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKIRESLMNQSRWNSGLR
              70        80        90       100       110       120


Conf: 501365102043200001788188998743799964027898509999999999999999
Pred: CCEEEEEEEECCCHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHH
  AA: GLSWRVDGKSQSRHSAQIHTPVAIIELELGKYGQESEFLCLEFDEVKVNQILKTLSEVEE
             130       140       150       160       170       180


Conf: 9977324999
Pred: HHHHHHCCCC
  AA: SISTLISQPN
             190

Show Conservation Score by AL2CO

1     M      -1.000    *
2     A      -1.000    *
3     A      -1.000    *
4     G      -1.000    *
5     E      -1.000    *
6     L      -0.514
7     E       1.093
8     G      -0.791
9     G      -1.107
10    K       2.096
11    P      -1.085
12    L       1.092
13    S      -0.871
14    G       0.936
15    L       1.903
16    L       2.091
17    N       0.190
18    A       0.753
19    L       1.470
20    A       0.119
21    Q       0.313
22    D      -1.150
23    T      -1.698
24    F       1.102
25    H      -0.147
26    G      -0.219
27    Y      -0.972
28    P      -0.783
29    G      -0.315
30    I       0.365
31    T      -0.235
32    E       0.189
33    E       0.477
34    L      -0.817
35    L       1.860
36    R      -0.195
37    S      -0.563
38    Q      -0.563
39    L       0.433
40    Y      -0.103
41    P       0.884
42    E       0.496
43    V      -0.741
44    P      -1.029
45    P      -1.264
46    E       0.540
47    E      -0.283
48    F       0.394
49    R      -1.598
50    P      -0.900
51    F      -0.217
52    L      -1.005
53    A      -0.495
54    K      -0.550
55    M      -1.118
56    R      -1.301
57    G      -1.149
58    I       0.483
59    L       0.213
60    K      -0.840
61    S      -0.731
62    I       0.112
63    A       0.707
64    S      -0.565
65    A      -0.345
66    D      -0.091
67    M       0.599
68    D       0.691
69    F      -1.633
70    N      -0.047
71    Q      -0.135
72    L       1.016
73    E       0.171
74    A      -0.149
75    F      -0.504
76    L       1.831
77    T       1.039
78    A       0.218
79    Q       0.864
80    T      -0.253
81    K       0.544
82    K      -0.098
83    Q      -0.165
84    G      -1.231
85    G      -0.272
86    I       0.879
87    T       0.416
88    S      -0.996
89    D      -0.055
90    Q       0.779
91    A      -0.525
92    A      -0.956
93    V      -0.323
94    I       0.321
95    S      -1.018
96    K       1.250
97    F      -0.012
98    W       2.830
99    K      -0.668
100   S      -0.731
101   H       0.433
102   K       0.233
103   T      -1.623
104   K      -0.380
105   I       1.419
106   R      -0.139
107   E       0.131
108   S      -1.241
109   L       0.502
110   M      -0.808
111   N      -0.483
112   Q      -0.581
113   S       0.991
114   R      -1.022
115   W       0.531
116   N      -0.525
117   S      -0.653
118   G      -0.949
119   L       1.054
120   R      -0.787
121   G      -0.360
122   L       0.162
123   S      -0.225
124   W       4.006
125   R       2.214
126   V       1.430
127   D       2.544
128   G      -0.349
129   K       0.651
130   S       0.202
131   Q       0.153
132   S       0.128
133   R       0.303
134   H      -1.300
135   S      -1.127
136   A      -1.039
137   Q      -0.799
138   I      -0.380
139   H      -0.016
140   T      -1.091
141   P       2.154
142   V      -0.399
143   A       1.105
144   I       0.504
145   I       0.978
146   E       0.226
147   L       2.466
148   E      -0.644
149   L       0.623
150   G      -0.811
151   K      -1.397
152   Y      -1.575
153   G      -0.514
154   Q      -0.502
155   E      -1.043
156   S      -1.104
157   E       0.047
158   F      -1.479
159   L      -0.146
160   C      -1.142
161   L       1.425
162   E       1.078
163   F       0.421
164   D       1.447
165   E      -0.429
166   V      -0.947
167   K      -0.394
168   V       1.083
169   N      -1.100
170   Q      -1.560
171   I       0.569
172   L      -0.172
173   K      -0.986
174   T      -0.078
175   L       1.041
176   S      -0.075
177   E      -1.152
178   V       1.256
179   E       0.837
180   E      -0.472
181   S      -0.894
182   I       1.822
183   S      -0.718
184   T       0.873
185   L       0.927
186   I      -1.000    *
187   S      -1.000    *
188   Q      -1.000    *
189   P      -1.000    *
190   N      -1.000    *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - 117.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50

        10         20         30         40         50         60 MAAGELEGGK PLSGLLNALA QDTFHGYPGI TEELLRSQLY PEVPPEEFRP FLAKMRGILK 
        70         80         90        100        110        120 SIASADMDFN QLEAFLTAQT KKQGGITSDQ AAVISKFWKS HKTKIRESLM NQSRWNSGLR 
       130        140        150        160        170        180 
GLSWRVDGKS QSRHSAQIHT PVAIIELELG KYGQESEFLC LEFDEVKVNQ ILKTLSEVEE 
       190                                                        
SISTLISQPN

Not Available

COMMD1 is a novel inhibitor of the transcription factors NF-κB and HIF-1. COMMD1 is predominantly localized in the cytoplasm and to a lesser extent in the nucleus. There are two putative NESs located at the C-terminus of COMMD1 and apparently lacks NLSs. The export activity of COMMD1 is important to regulate NF-κB and HIF-1 activities.

[1]. "Nuclear-cytosolic transport of COMMD1 regulates NF-kappaB and HIF-1 activity."
Muller PA, van de Sluis B, Groot AJ, Verbeek D, Vonk WI, Maine GN, Burstein E, Wijmenga C, Vooijs M, Reits E, Klomp LW (2009) Traffic, :514-527 PubMed

Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus. Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.

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