Double-stranded RNA-binding protein Staufen homolog 2
UniProt
Show FASTA Format
>gi|52001195|gb|AAU21478.1|Q68SB1.1 |double-stranded RNA binding protein staufen 2 59 kDa isoform [Rattus norvegicus]
MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPGSITPTVELNG
LAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAA
MKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTR
VSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRL
AQIQQARKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQ
DQLDKTGENKGWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLSPKDMNQPSSSFF
SVESPSPTSSAPAARELLMNGTSPAAEAIGLKGSSPTPPCSSVQPSKQLEYLARIQGFQAALSALKQFSE
QGLESIDGVVNVENGSLEKQAKHLREKADNNQANPGSITQDCKKSKSVI
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 953251499999981508998366968899999999987389999999999989999999
Pred: CCCCCEEEEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
AA: MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQKPPKSNVNNNPG
10 20 30 40 50 60
Conf: 989714513443105999700138999999999877877668887679999216999998
Pred: CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
AA: SITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCPMPKIFYVQLTV
70 80 90 100 110 120
Conf: 061889720736689799999999982239999999899999988887776898815788
Pred: ECEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
AA: GNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLV
130 140 150 160 170 180
Conf: 999996099930688304699988835999998212788305741135999999999999
Pred: HHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHH
AA: FEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL
190 200 210 220 230 240
Conf: 708999987798655689985333589988999996128999999934899934885036
Pred: HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC
AA: KKLPPLPVIEKPKLFFKKRPKTIIKAGPEYGQGMNPISRLAQIQQARKEKEPDYVLLSER
250 260 270 280 290 300
Conf: 999650278999957556572379767999999999999807789998633224357999
Pred: CCCCCCEEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
AA: GMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTSLQDQLDKTGENK
310 320 330 340 350 360
Conf: 998999899988888888445569305554320013656763244369988999998876
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GWSGPKPGFPEPANNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLSPKDMNQPSSSFF
370 380 390 400 410 420
Conf: 447999998099999986269982011101259889999999990568999998706288
Pred: CCCCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEE
AA: SVESPSPTSSAPAARELLMNGTSPAAEAIGLKGSSPTPPCSSVQPSKQLEYLARIQGFQA
430 440 450 460 470 480
Conf: 80430235540897533332134661456535765431037899997410122225789
Pred: EECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
AA: ALSALKQFSEQGLESIDGVVNVENGSLEKQAKHLREKADNNQANPGSITQDCKKSKSVI
490 500 510 520 530
Show Conservation Score by AL2CO
1 M -1.000 *
2 L -1.000 *
3 Q -1.000 *
4 I -1.000 *
5 N -1.000 *
6 Q -1.000 *
7 M -1.000 *
8 F -1.000 *
9 S -1.000 *
10 V -1.000 *
11 Q -1.000 *
12 L -1.000 *
13 S -1.000 *
14 L -1.000 *
15 G -1.000 *
16 E -1.000 *
17 Q -1.000 *
18 T -1.000 *
19 W -1.000 *
20 E -1.000 *
21 S -1.000 *
22 E -1.000 *
23 G -1.000 *
24 S -1.000 *
25 S 1.880
26 I 3.089
27 K 2.827
28 K 0.767
29 A 1.429
30 Q 1.195
31 Q 1.920
32 A 0.318
33 V 1.876
34 A 2.985
35 N 0.294
36 K -0.316
37 A 2.387
38 L 1.803
39 T -0.005
40 E 0.133
41 S 1.947
42 T -0.019
43 L 1.161
44 P 1.354
45 K -0.277
46 P 1.794
47 V 0.106
48 Q -0.541
49 K 0.004
50 P 0.262
51 P -0.600
52 K -0.410
53 S -0.663
54 N -0.730
55 V -0.832
56 N -0.342
57 N -0.280
58 N -0.581
59 P -0.359
60 G -0.508
61 S -0.446
62 I -0.346
63 T -0.193
64 P 0.427
65 T -0.031
66 V -0.419
67 E -0.201
68 L 0.129
69 N 0.461
70 G -0.221
71 L -0.108
72 A 0.236
73 M -0.515
74 K -0.163
75 R -0.135
76 G 0.527
77 E -0.711
78 P -0.230
79 A 0.126
80 I -0.751
81 Y 0.488
82 R -0.756
83 P -0.117
84 L -0.766
85 D -0.342
86 P 0.415
87 K -0.844
88 P -0.579
89 F -0.847
90 P -0.780
91 N -0.663
92 Y -0.973
93 R -0.753
94 A -0.626
95 N -0.759
96 Y -0.383
97 N -0.444
98 F -0.867
99 R -0.055
100 G -0.556
101 M -0.663
102 Y -0.794
103 N -0.733
104 Q -0.550
105 R -0.666
106 Y -0.194
107 H -0.659
108 C -0.778
109 P 0.181
110 M -0.958
111 P 0.088
112 K -0.404
113 I -0.240
114 F 0.707
115 Y -0.543
116 V 0.424
117 Q 0.055
118 L 0.961
119 T -0.884
120 V 1.586
121 G 1.182
122 N 0.173
123 N -0.552
124 E -0.327
125 F 0.611
126 F -0.659
127 G 2.937
128 E 0.034
129 G 2.041
130 K -0.593
131 T 1.751
132 R -0.030
133 Q 1.236
134 A -0.259
135 A 2.857
136 R 1.862
137 H 1.023
138 N 0.034
139 A 2.524
140 A 2.489
141 M -0.469
142 K -0.375
143 A 1.680
144 L 2.265
145 Q -0.755
146 A -0.642
147 L 0.541
148 Q -0.457
149 N -0.953
150 E -0.314
151 P -0.359
152 I -1.039
153 P -0.415
154 E -0.715
155 K -1.012
156 S -1.110
157 P -0.779
158 Q -1.166
159 N -0.746
160 G -0.767
161 E -0.819
162 S -0.747
163 G -0.851
164 K -1.036
165 E -0.983
166 M -1.063
167 D -0.842
168 D -0.954
169 D -0.657
170 K -0.950
171 D -1.007
172 A -0.804
173 N -0.673
174 K -0.254
175 S 0.569
176 E 0.440
177 I 0.575
178 S -0.183
179 L -0.569
180 V 0.575
181 F -0.008
182 E 0.845
183 I -0.274
184 A 0.335
185 L -0.335
186 K 0.305
187 R -0.439
188 N -0.296
189 M -0.457
190 P -0.383
191 V 0.416
192 S -0.782
193 F 1.055
194 E -0.339
195 V -0.328
196 I -0.426
197 K -0.474
198 E -0.875
199 S -0.857
200 G 0.977
201 P -0.349
202 P 0.426
203 H 0.959
204 M -0.724
205 K 0.149
206 S -0.764
207 F 1.369
208 V -0.816
209 T 0.052
210 R -0.561
211 V 1.015
212 S -0.431
213 V 1.125
214 G 0.192
215 E -0.009
216 F -0.738
217 S -0.495
218 A 0.062
219 E -0.649
220 G 0.745
221 E -0.399
222 G 1.759
223 N -0.264
224 S 0.877
225 K 1.624
226 K 2.168
227 L -0.481
228 S 3.343
229 K 2.037
230 K 0.084
231 R -0.348
232 A 2.807
233 A 2.763
234 T -0.582
235 T -0.152
236 V 1.513
237 L 0.820
238 Q -0.483
239 E -0.494
240 L 1.492
241 K -0.655
242 K -0.521
243 L -0.702
244 P -0.113
245 P -0.730
246 L -0.564
247 P -0.446
248 V -0.949
249 I -0.800
250 E -0.595
251 K -0.328
252 P -0.500
253 K -0.959
254 L -1.030
255 F -1.268
256 F -1.115
257 K -0.232
258 K -0.764
259 R -0.662
260 P -0.630
261 K -0.955
262 T -0.608
263 I -0.900
264 I -0.631
265 K -0.545
266 A -0.798
267 G -0.479
268 P -0.569
269 E -0.127
270 Y -0.683
271 G -0.413
272 Q -0.653
273 G -0.122
274 M -0.890
275 N 1.945
276 P 1.650
277 I 2.095
278 S 0.479
279 R -0.350
280 L 2.629
281 A -0.742
282 Q 1.005
283 I 0.648
284 Q 0.206
285 Q 0.178
286 A 0.220
287 R -0.302
288 K 0.463
289 E -0.612
290 K -0.776
291 E -0.392
292 P 0.951
293 D 0.032
294 Y 2.375
295 V -0.581
296 L -0.068
297 L 0.053
298 S -0.304
299 E 1.097
300 R -0.643
301 G 1.820
302 M -0.538
303 P 0.240
304 R 1.209
305 R -0.321
306 R 0.686
307 E -0.164
308 F 2.140
309 V 0.264
310 M 0.220
311 Q -0.295
312 V 1.989
313 K -0.500
314 V 0.543
315 G -0.340
316 N -0.324
317 E -0.807
318 V -0.661
319 A -0.267
320 T -0.573
321 G 2.302
322 T -0.579
323 G 1.635
324 P -0.053
325 N 2.221
326 K 1.036
327 K 1.405
328 I 0.190
329 A 2.509
330 K 2.287
331 K 0.208
332 N -0.233
333 A 3.163
334 A 4.081
335 E -0.291
336 A -0.064
337 M 1.989
338 L 1.359
339 L -0.722
340 Q -0.546
341 L 1.386
342 G 0.057
343 Y -0.697
344 K -0.605
345 A -0.316
346 S -0.765
347 T -0.725
348 S -0.038
349 L -0.827
350 Q -1.003
351 D -0.679
352 Q -0.536
353 L -0.666
354 D -0.461
355 K -1.054
356 T -0.989
357 G -0.737
358 E -0.894
359 N -0.648
360 K -0.670
361 G -0.723
362 W -0.960
363 S -0.326
364 G -0.351
365 P -0.617
366 K -0.420
367 P -0.731
368 G -0.627
369 F -0.924
370 P -0.906
371 E 0.161
372 P -0.602
373 A -0.696
374 N -0.685
375 N -0.438
376 T -0.645
377 P -0.455
378 K -0.290
379 G -0.544
380 I -0.381
381 L -0.198
382 H -0.697
383 L -0.374
384 S -0.664
385 P -0.464
386 D -0.365
387 V -0.641
388 Y -0.766
389 Q -0.698
390 E -0.706
391 M -0.812
392 E -0.697
393 A -0.682
394 S -0.706
395 R -0.603
396 H -0.413
397 R -0.686
398 V -0.973
399 T -0.908
400 S -0.556
401 G -0.422
402 T -0.881
403 T -0.620
404 L -0.786
405 G -0.544
406 Y -0.704
407 L -1.000 *
408 S -1.000 *
409 P -1.000 *
410 K -1.000 *
411 D -1.000 *
412 M -1.000 *
413 N -1.000 *
414 Q -1.000 *
415 P -1.000 *
416 S -1.000 *
417 S -1.000 *
418 S -1.000 *
419 F -1.000 *
420 F -1.000 *
421 S -1.000 *
422 V -1.000 *
423 E -1.000 *
424 S -1.000 *
425 P -1.000 *
426 S -1.000 *
427 P -1.000 *
428 T -1.000 *
429 S -1.000 *
430 S -1.000 *
431 A -1.000 *
432 P -1.000 *
433 A -1.000 *
434 A -1.000 *
435 R -1.000 *
436 E -1.000 *
437 L -1.000 *
438 L -1.000 *
439 M -1.000 *
440 N -1.000 *
441 G -1.000 *
442 T -1.000 *
443 S -1.000 *
444 P -1.000 *
445 A -1.000 *
446 A -1.000 *
447 E -1.000 *
448 A -1.000 *
449 I -1.000 *
450 G -1.000 *
451 L -1.000 *
452 K -1.000 *
453 G -1.000 *
454 S -1.000 *
455 S -1.000 *
456 P -1.000 *
457 T -1.000 *
458 P -1.000 *
459 P -1.000 *
460 C -1.000 *
461 S -1.000 *
462 S -1.000 *
463 V -1.000 *
464 Q -1.000 *
465 P -1.000 *
466 S -1.000 *
467 K -1.000 *
468 Q -1.000 *
469 L -1.000 *
470 E -1.000 *
471 Y -1.000 *
472 L -1.000 *
473 A -1.000 *
474 R -1.000 *
475 I -1.000 *
476 Q -1.000 *
477 G -1.000 *
478 F -1.000 *
479 Q -1.000 *
480 A -1.000 *
481 A -1.000 *
482 L -1.000 *
483 S -1.000 *
484 A -1.000 *
485 L -1.000 *
486 K -1.000 *
487 Q -1.000 *
488 F -1.000 *
489 S -1.000 *
490 E -1.000 *
491 Q -1.000 *
492 G -1.000 *
493 L -1.000 *
494 E -1.000 *
495 S -1.000 *
496 I -1.000 *
497 D -1.000 *
498 G -1.000 *
499 V -1.000 *
500 V -1.000 *
501 N -1.000 *
502 V -1.000 *
503 E -1.000 *
504 N -1.000 *
505 G -1.000 *
506 S -1.000 *
507 L -1.000 *
508 E -1.000 *
509 K -1.000 *
510 Q -1.000 *
511 A -1.000 *
512 K -1.000 *
513 H -1.000 *
514 L -1.000 *
515 R -1.000 *
516 E -1.000 *
517 K -1.000 *
518 A -1.000 *
519 D -1.000 *
520 N -1.000 *
521 N -1.000 *
522 Q -1.000 *
523 A -1.000 *
524 N -1.000 *
525 P -1.000 *
526 G -1.000 *
527 S -1.000 *
528 I -1.000 *
529 T -1.000 *
530 Q -1.000 *
531 D -1.000 *
532 C -1.000 *
533 K -1.000 *
534 K -1.000 *
535 S -1.000 *
536 K -1.000 *
537 S -1.000 *
538 V -1.000 *
539 I -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 122.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MLQINQMFSV QLSLGEQTWE SEGSSIKKAQ QAVANKALTE STLPKPVQKP PKSNVNNNPG
70 80 90 100 110 120
SITPTVELNG LAMKRGEPAI YRPLDPKPFP NYRANYNFRG MYNQRYHCPM PKIFYVQLTV
130 140 150 160 170 180
GNNEFFGEGK TRQAARHNAA MKALQALQNE PIPEKSPQNG ESGKEMDDDK DANKSEISLV
190 200 210 220 230 240
FEIALKRNMP VSFEVIKESG PPHMKSFVTR VSVGEFSAEG EGNSKKLSKK RAATTVLQEL
250 260 270 280 290 300
KKLPPLPVIE KPKLFFKKRP KTIIKAGPEY GQGMNPISRL AQIQQARKEK EPDYVLLSER
310 320 330 340 350 360
GMPRRREFVM QVKVGNEVAT GTGPNKKIAK KNAAEAMLLQ LGYKASTSLQ DQLDKTGENK
370 380 390 400 410 420
GWSGPKPGFP EPANNTPKGI LHLSPDVYQE MEASRHRVTS GTTLGYLSPK DMNQPSSSFF
430 440 450 460 470 480
SVESPSPTSS APAARELLMN GTSPAAEAIG LKGSSPTPPC SSVQPSKQLE YLARIQGFQA
490 500 510 520 530
ALSALKQFSE QGLESIDGVV NVENGSLEKQ AKHLREKADN NQANPGSITQ DCKKSKSVI
[1]. "Alternative splicing of Staufen2 creates the nuclear export signal for CRM1 (Exportin 1)."
Miki T, Yoneda Y. (2004)
J Biol Chem,
279:47473-9
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.