Transcription factor SOX-9
UniProt
Show FASTA Format
>gi|1351096|sp|P48436.1|SOX9_HUMAN RecName: Full=Transcription factor SOX-9
MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDLKKESEEDKFP
VCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLG
KLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQAD
SPHSSSGMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSS
DVISNIETFDVNEFDQYLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPP
QAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAY
SPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPAQRPMYTPIADTSGVPSIP
QTHSPQHWEQPVYTQLTRP
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 986510236923220599999999999999999999999999999999889999999984
Pred: CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
10 20 30 40 50 60
Conf: 333323769820456544210387675468876778998899987998516789999975
Pred: CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
AA: KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
70 80 90 100 110 120
Conf: 431057998886033565656542002257995289999999961588999978844345
Pred: HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
AA: RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
130 140 150 160 170 180
Conf: 656985100000013678983000234479999999998889999999999999999999
Pred: CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTT
190 200 210 220 230 240
Conf: 999889998888889999999999999766788878878776688888996655678999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: PKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPP
250 260 270 280 290 300
Conf: 999999998899888999899856888998764212579999999999999999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: NGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQPPQAPPAPQAPP
310 320 330 340 350 360
Conf: 999999999999999987776778899998664333444457999998677899776446
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: QPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAY
370 380 390 400 410 420
Conf: 899988889999999888887677889998888889999998876665699999988767
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: SPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYMNPAQRPMYTPI
430 440 450 460 470 480
Conf: 79999999999999998998742234699
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: ADTSGVPSIPQTHSPQHWEQPVYTQLTRP
490 500
Show Conservation Score by AL2CO
1 M -1.000 *
2 N -1.000 *
3 L -1.000 *
4 L -1.000 *
5 D -1.000 *
6 P -1.000 *
7 F -1.000 *
8 M -1.000 *
9 K -1.000 *
10 M -1.000 *
11 T -1.000 *
12 D -1.000 *
13 E -1.000 *
14 Q -1.000 *
15 E -1.000 *
16 K -1.000 *
17 G -1.000 *
18 L -1.000 *
19 S -1.000 *
20 G -1.000 *
21 A -1.000 *
22 P -1.000 *
23 S -1.000 *
24 P -1.000 *
25 T -1.000 *
26 M -1.000 *
27 S -1.000 *
28 E -1.000 *
29 D -1.000 *
30 S -1.000 *
31 A -1.000 *
32 G -1.000 *
33 S -1.000 *
34 P -1.000 *
35 C -1.000 *
36 P -1.000 *
37 S -1.000 *
38 G -1.000 *
39 S -1.000 *
40 G -1.000 *
41 S -1.000 *
42 D -1.000 *
43 T -1.000 *
44 E -1.000 *
45 N -1.000 *
46 T -1.000 *
47 R -1.000 *
48 P -1.000 *
49 Q -1.000 *
50 E -1.000 *
51 N -1.000 *
52 T -1.000 *
53 F -1.000 *
54 P -1.000 *
55 K -1.000 *
56 G -1.000 *
57 E -1.000 *
58 P -1.000 *
59 D -1.000 *
60 L -1.000 *
61 K -1.000 *
62 K -1.000 *
63 E -1.000 *
64 S -1.000 *
65 E -1.000 *
66 E -1.000 *
67 D -1.000 *
68 K -1.000 *
69 F -1.000 *
70 P -1.000 *
71 V -1.000 *
72 C -1.000 *
73 I -1.000 *
74 R -1.000 *
75 E 0.259
76 A -0.010
77 V 0.067
78 S -0.071
79 Q -0.436
80 V -0.066
81 L 0.392
82 K -0.318
83 G 0.708
84 Y -0.241
85 D 0.267
86 W 0.323
87 T 0.514
88 L -0.219
89 V 0.270
90 P -0.412
91 M -0.489
92 P -0.106
93 V -0.256
94 R -0.463
95 V -0.271
96 N -0.439
97 G -0.381
98 S -0.482
99 S -0.321
100 K -0.094
101 N -0.247
102 K 0.242
103 P 0.556
104 H 2.552
105 V 2.515
106 K 2.404
107 R 2.578
108 P 3.797
109 M 2.166
110 N 3.168
111 A 2.067
112 F 4.960
113 M 3.798
114 V 2.960
115 W 2.859
116 A 2.192
117 Q 2.409
118 A -0.210
119 A 0.539
120 R 3.271
121 R 1.283
122 K 0.049
123 L 1.328
124 A 0.563
125 D 0.131
126 Q 0.242
127 Y 0.321
128 P 2.339
129 H 0.485
130 L 0.510
131 H 0.450
132 N 2.434
133 A 1.646
134 E 0.836
135 L 1.984
136 S 2.503
137 K 0.827
138 T 0.447
139 L 1.862
140 G 0.598
141 K 0.099
142 L -0.265
143 W 1.871
144 R 0.420
145 L -0.394
146 L 1.869
147 N 0.665
148 E 0.001
149 S -0.070
150 E 0.839
151 K 2.186
152 R 0.903
153 P 0.178
154 F 2.917
155 V 0.790
156 E 1.378
157 E 1.509
158 A 2.808
159 E 0.579
160 R 1.490
161 L 1.847
162 R 2.356
163 V 0.288
164 Q 0.201
165 H 3.686
166 K 0.713
167 K 0.690
168 D 1.037
169 H 2.358
170 P 4.076
171 D 2.250
172 Y 3.467
173 K 1.307
174 Y 2.154
175 Q 1.420
176 P 1.131
177 R 1.519
178 R 1.084
179 R 0.274
180 K 0.566
181 S -0.099
182 V -0.320
183 K -0.326
184 N -0.598
185 G -0.307
186 Q -0.272
187 A 0.092
188 E -0.618
189 A -0.449
190 E -0.728
191 E -0.685
192 A -0.510
193 T -0.455
194 E -0.369
195 Q -0.471
196 T -0.517
197 H -0.731
198 I -0.811
199 S -0.600
200 P -0.393
201 N -0.194
202 A -0.327
203 I -0.529
204 F -0.509
205 K -0.303
206 A -0.096
207 L -0.535
208 Q -0.489
209 A -0.561
210 D -0.676
211 S -0.650
212 P -0.557
213 H -0.633
214 S -0.512
215 S -0.485
216 S -0.576
217 G -0.264
218 M -0.878
219 S -0.476
220 E -0.651
221 V -0.820
222 H -0.804
223 S -0.708
224 P -0.714
225 G -0.404
226 E -0.670
227 H -0.738
228 S -0.602
229 G -0.524
230 Q -0.834
231 S -0.120
232 Q -0.524
233 G -0.419
234 P -0.070
235 P -0.436
236 T -0.596
237 P -0.514
238 P -0.617
239 T -0.668
240 T -0.475
241 P -0.395
242 K -0.832
243 T -0.620
244 D -0.668
245 V -0.704
246 Q -0.687
247 P -0.352
248 G -0.576
249 K -0.652
250 A -0.545
251 D -0.532
252 L -0.679
253 K -0.528
254 R -0.408
255 E -0.649
256 G -0.317
257 R -0.504
258 P -0.705
259 L -0.601
260 P -0.569
261 E -0.673
262 G -0.608
263 G -0.315
264 R -0.491
265 Q -0.664
266 P -0.556
267 P -0.454
268 I -0.583
269 D -0.505
270 F -0.758
271 R -0.563
272 D -0.613
273 V -0.415
274 D -0.399
275 I -0.562
276 G -0.204
277 E -0.463
278 L -0.518
279 S -0.317
280 S -0.416
281 D -0.449
282 V -0.708
283 I -0.579
284 S -0.582
285 N -0.619
286 I -0.671
287 E -0.336
288 T -0.480
289 F -0.816
290 D -0.337
291 V -0.636
292 N -0.512
293 E -0.404
294 F -0.388
295 D -0.410
296 Q -0.467
297 Y -0.692
298 L -0.644
299 P -0.460
300 P -0.532
301 N -0.308
302 G -0.308
303 H -0.516
304 P -0.439
305 G -0.559
306 V -0.563
307 P -0.118
308 A -0.721
309 T -0.753
310 H -0.520
311 G -0.473
312 Q -0.461
313 V -0.636
314 T -0.775
315 Y -0.411
316 T -0.670
317 G -0.117
318 S -0.395
319 Y -0.468
320 G -0.549
321 I -0.457
322 S -0.493
323 S -0.410
324 T -0.486
325 A -0.371
326 A -0.602
327 T -0.730
328 P -0.550
329 A -0.474
330 S -0.524
331 A -0.372
332 G -0.265
333 H -0.301
334 V -0.470
335 W -0.406
336 M -0.500
337 S -0.548
338 K -0.493
339 Q -0.561
340 Q -0.672
341 A -0.496
342 P -0.458
343 P -0.448
344 P -0.657
345 P -0.302
346 P -0.472
347 Q -0.673
348 Q -0.655
349 P -0.371
350 P -0.509
351 Q -0.495
352 A -0.501
353 P -0.536
354 P -0.478
355 A -0.630
356 P -0.609
357 Q -0.494
358 A -0.546
359 P -0.674
360 P -0.376
361 Q -0.614
362 P -0.529
363 Q -0.485
364 A -0.445
365 A -0.646
366 P -0.321
367 P -0.574
368 Q -0.828
369 Q -0.717
370 P -0.469
371 A -0.523
372 A -0.464
373 P -0.423
374 P -0.485
375 Q -0.765
376 Q -0.732
377 P -0.698
378 Q -0.718
379 A -0.732
380 H -0.495
381 T -0.664
382 L -0.647
383 T -0.566
384 T -0.230
385 L -0.612
386 S -0.698
387 S -0.473
388 E -0.499
389 P -0.511
390 G -0.397
391 Q -0.495
392 S -0.490
393 Q -0.411
394 R -0.585
395 T -0.199
396 H -0.449
397 I -0.426
398 K -0.547
399 T -0.372
400 E -0.457
401 Q -0.559
402 L -0.274
403 S -0.517
404 P 0.158
405 S -0.202
406 H 0.109
407 Y 0.200
408 S -0.218
409 E -0.401
410 Q -0.103
411 Q 0.190
412 Q -0.441
413 H -0.291
414 S -0.124
415 P -0.346
416 Q -0.232
417 Q 0.214
418 I -0.542
419 A -0.285
420 Y -0.361
421 S 0.257
422 P 0.274
423 F -0.430
424 N 0.729
425 L -0.219
426 P 0.582
427 H 0.003
428 Y 0.182
429 S -0.068
430 P 0.405
431 S 0.097
432 Y 0.045
433 P 0.694
434 P -1.000 *
435 I -1.000 *
436 T -1.000 *
437 R -1.000 *
438 S -1.000 *
439 Q -1.000 *
440 Y -1.000 *
441 D -1.000 *
442 Y -1.000 *
443 T -1.000 *
444 D -1.000 *
445 H -1.000 *
446 Q -1.000 *
447 N -1.000 *
448 S -1.000 *
449 S -1.000 *
450 S -1.000 *
451 Y -1.000 *
452 Y -1.000 *
453 S -1.000 *
454 H -1.000 *
455 A -1.000 *
456 A -1.000 *
457 G -1.000 *
458 Q -1.000 *
459 G -1.000 *
460 T -1.000 *
461 G -1.000 *
462 L -1.000 *
463 Y -1.000 *
464 S -1.000 *
465 T -1.000 *
466 F -1.000 *
467 T -1.000 *
468 Y -1.000 *
469 M -1.000 *
470 N -1.000 *
471 P -1.000 *
472 A -1.000 *
473 Q -1.000 *
474 R -1.000 *
475 P -1.000 *
476 M -1.000 *
477 Y -1.000 *
478 T -1.000 *
479 P -1.000 *
480 I -1.000 *
481 A -1.000 *
482 D -1.000 *
483 T -1.000 *
484 S -1.000 *
485 G -1.000 *
486 V -1.000 *
487 P -1.000 *
488 S -1.000 *
489 I -1.000 *
490 P -1.000 *
491 Q -1.000 *
492 T -1.000 *
493 H -1.000 *
494 S -1.000 *
495 P -1.000 *
496 Q -1.000 *
497 H -1.000 *
498 W -1.000 *
499 E -1.000 *
500 Q -1.000 *
501 P -1.000 *
502 V -1.000 *
503 Y -1.000 *
504 T -1.000 *
505 Q -1.000 *
506 L -1.000 *
507 T -1.000 *
508 R -1.000 *
509 P -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 129.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MNLLDPFMKM TDEQEKGLSG APSPTMSEDS AGSPCPSGSG SDTENTRPQE NTFPKGEPDL
70 80 90 100 110 120
KKESEEDKFP VCIREAVSQV LKGYDWTLVP MPVRVNGSSK NKPHVKRPMN AFMVWAQAAR
130 140 150 160 170 180
RKLADQYPHL HNAELSKTLG KLWRLLNESE KRPFVEEAER LRVQHKKDHP DYKYQPRRRK
190 200 210 220 230 240
SVKNGQAEAE EATEQTHISP NAIFKALQAD SPHSSSGMSE VHSPGEHSGQ SQGPPTPPTT
250 260 270 280 290 300
PKTDVQPGKA DLKREGRPLP EGGRQPPIDF RDVDIGELSS DVISNIETFD VNEFDQYLPP
310 320 330 340 350 360
NGHPGVPATH GQVTYTGSYG ISSTAATPAS AGHVWMSKQQ APPPPPQQPP QAPPAPQAPP
370 380 390 400 410 420
QPQAAPPQQP AAPPQQPQAH TLTTLSSEPG QSQRTHIKTE QLSPSHYSEQ QQHSPQQIAY
430 440 450 460 470 480
SPFNLPHYSP SYPPITRSQY DYTDHQNSSS YYSHAAGQGT GLYSTFTYMN PAQRPMYTPI
490 500
ADTSGVPSIP QTHSPQHWEQ PVYTQLTRP
SOX proteins are a family of transcription factors related to the testis-determining factor SRY. SOX proteins are characterized by a highly conserved DNA binding high mobility group (HMG) domain, which includes two NLSs. Each alone is functional, whereas both are needed to drive SOX proteins completely nuclear. SOX proteins are also cytoplasmic and the sub-cellular localization of SOX proteins are highly regulated. Sox9 contains a functional NES at 137-147. Single mutation at L142 can abolish export. Another member of the SOX protein family, Sox10 has also been shown to contain a very similar NES.
Ref.2Shuttling of SOX proteins., Malki et al., Int J Biochem Cell Biol, 2009
[1]. "A nuclear export signal within the high mobility group domain regulates the nucleocytoplasmic translocation of SOX9 during sexual determination."
Gasca S, Canizares J, De Santa Barbara P, Mejean C, Poulat F, Berta P, Boizet-Bonhoure B (2002)
Proc Natl Acad Sci,
99:11199-204
PubMed[2]. "Shuttling of SOX proteins."
Malki S, Boizet-Bonhoure B, Poulat F (2009)
Int J Biochem Cell Biol,
:
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.