RanBP-type and C3HC4-type zinc finger-containing protein 1
UniProt
Show FASTA Format
>gi|166214993|sp|Q9BYM8.2|UB7I3_HUMAN RecName: Full=RanBP-type and C3HC4-type zinc finger-containing protein 1; AltName: Full=HBV-associated factor 4; AltName: Full=Heme-oxidized IRP2 ubiquitin ligase 1; Short=HOIL-1; AltName: Full=Hepatitis B virus X-associated protein 4; AltName: Full=RING finger protein 54; AltName: Full=Ubiquitin-conjugating enzyme 7-interacting protein 3
MDEKTKKAEEMALSLTRAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVSVEDAQMHTVT
IWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSARNTSLNP
QELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTR
PGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPA
ECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDY
QRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLAL
RAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTS
GGCRCRVNGIPCHPSCQNCH
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 955669999999999999825999999999999983267309982799999996189999
Pred: CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEE
AA: MDEKTKKAEEMALSLTRAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVS
10 20 30 40 50 60
Conf: 821774233589991987849999998420159999875433475688897610004966
Pred: EECCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: VEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVR
70 80 90 100 110 120
Conf: 689916899821788999936768998763302589988877889999999999999999
Pred: CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: QNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQE
130 140 150 160 170 180
Conf: 999999999999999886888644479999875433457897788898679846788744
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
AA: PGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARL
190 200 210 220 230 240
Conf: 436999999988654331131899873631134699999523011301689974121798
Pred: HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
AA: AGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC
250 260 270 280 290 300
Conf: 742210479999985072653245778989998657888997218998999999998899
Pred: CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHH
AA: LHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISI
310 320 330 340 350 360
Conf: 984299938738999995088508997132899771135210001699990767999998
Pred: HHHCCCCEEECCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
AA: AENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLAL
370 380 390 400 410 420
Conf: 744369999999999999963998889999931452467985311688886220689999
Pred: HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEECCCCCCCEEECCCCCC
AA: RAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPR
430 440 450 460 470 480
Conf: 999999999989644679856789999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: WGPGGPGDTSGGCRCRVNGIPCHPSCQNCH
490 500 510
Show Conservation Score by AL2CO
1 M -1.000 *
2 D -1.000 *
3 E -1.000 *
4 K -1.000 *
5 T -1.000 *
6 K -1.000 *
7 K -1.000 *
8 A -1.000 *
9 E -1.000 *
10 E -1.000 *
11 M -1.000 *
12 A -1.000 *
13 L -1.000 *
14 S -1.000 *
15 L -1.000 *
16 T -1.000 *
17 R -1.000 *
18 A -1.000 *
19 V -1.000 *
20 A -1.000 *
21 G -1.000 *
22 G -1.000 *
23 D -1.000 *
24 E -1.000 *
25 Q -1.000 *
26 V -1.000 *
27 A -1.000 *
28 M -1.000 *
29 K -1.000 *
30 C -1.000 *
31 A -1.000 *
32 I -1.000 *
33 W -1.000 *
34 L -1.000 *
35 A -1.000 *
36 E -1.000 *
37 Q -1.000 *
38 R -1.000 *
39 V -1.000 *
40 P -1.000 *
41 L -1.000 *
42 S -1.000 *
43 V -1.000 *
44 Q -1.000 *
45 L -1.000 *
46 K -1.000 *
47 P -1.000 *
48 E -1.000 *
49 V -1.000 *
50 S -1.000 *
51 P -1.000 *
52 T -1.000 *
53 Q -1.000 *
54 D -1.000 *
55 I -1.000 *
56 R -1.000 *
57 L -1.000 *
58 W -1.000 *
59 V -1.000 *
60 S -1.000 *
61 V -1.000 *
62 E -1.000 *
63 D -1.000 *
64 A -1.000 *
65 Q -1.000 *
66 M -1.000 *
67 H -1.000 *
68 T -1.000 *
69 V -1.000 *
70 T -1.000 *
71 I -1.000 *
72 W -1.000 *
73 L -1.000 *
74 T -1.000 *
75 V -1.000 *
76 R -1.000 *
77 P -1.000 *
78 D -1.000 *
79 M -1.000 *
80 T -1.000 *
81 V -1.000 *
82 A -1.000 *
83 S -1.000 *
84 L -1.000 *
85 K -1.000 *
86 D -1.000 *
87 M -1.000 *
88 V -1.000 *
89 F -1.000 *
90 L -1.000 *
91 D -1.000 *
92 Y -1.000 *
93 G -1.000 *
94 F -1.000 *
95 P -1.000 *
96 P -1.000 *
97 V -1.000 *
98 L -1.000 *
99 Q -1.000 *
100 Q -1.000 *
101 W -1.000 *
102 V -1.000 *
103 I -1.000 *
104 G -1.000 *
105 Q -1.000 *
106 R -1.000 *
107 L -1.000 *
108 A -1.000 *
109 R -1.000 *
110 D -1.000 *
111 Q -1.000 *
112 E -1.000 *
113 T -1.000 *
114 L -1.000 *
115 H -1.000 *
116 S -1.000 *
117 H -1.000 *
118 G -1.000 *
119 V -1.000 *
120 R -1.000 *
121 Q -1.000 *
122 N -1.000 *
123 G -1.000 *
124 D -1.000 *
125 S -1.000 *
126 A -1.000 *
127 Y -1.000 *
128 L -1.000 *
129 Y -1.000 *
130 L -1.000 *
131 L -1.000 *
132 S -1.000 *
133 A -1.000 *
134 R -1.000 *
135 N -1.000 *
136 T -1.000 *
137 S -1.000 *
138 L -1.000 *
139 N -1.000 *
140 P -1.000 *
141 Q -1.000 *
142 E -1.000 *
143 L -1.000 *
144 Q -1.000 *
145 R -1.000 *
146 E -1.000 *
147 R -1.000 *
148 Q -1.000 *
149 L -1.000 *
150 R -1.000 *
151 M -1.000 *
152 L -1.000 *
153 E -1.000 *
154 D -1.000 *
155 L -1.000 *
156 G -1.000 *
157 F -1.000 *
158 K -1.000 *
159 D -1.000 *
160 L -1.000 *
161 T -1.000 *
162 L -1.000 *
163 Q -1.000 *
164 P -1.000 *
165 R -1.000 *
166 G -1.000 *
167 P -1.000 *
168 L -1.000 *
169 E -1.000 *
170 P -1.000 *
171 G -1.000 *
172 P -1.000 *
173 P -1.000 *
174 K -1.000 *
175 P -1.000 *
176 G -1.000 *
177 V -1.000 *
178 P -1.000 *
179 Q -1.000 *
180 E -1.000 *
181 P -1.000 *
182 G -1.000 *
183 R -1.000 *
184 G -1.000 *
185 Q -1.000 *
186 P -1.000 *
187 D -0.355
188 A -1.000 *
189 V -0.284
190 P -1.000 *
191 E -1.000 *
192 P -1.000 *
193 P -1.000 *
194 P -1.000 *
195 V -1.000 *
196 G -1.000 *
197 W -1.000 *
198 Q -1.000 *
199 C -1.000 *
200 P -0.179
201 G -0.592
202 C 0.568
203 T -0.305
204 F -0.331
205 I -0.452
206 N -0.345
207 K 0.019
208 P 0.225
209 T -0.582
210 R -0.198
211 P -0.259
212 G -0.094
213 C -0.285
214 E -0.460
215 M -0.324
216 C -0.009
217 C -0.506
218 R -0.563
219 A -0.693
220 R -0.337
221 P -0.306
222 E -0.816
223 A -0.723
224 Y -0.286
225 Q -0.818
226 V -0.568
227 P -0.413
228 A -0.627
229 S -0.685
230 Y -0.506
231 Q -0.523
232 P -0.464
233 D -0.621
234 E -0.516
235 E -0.657
236 E -0.665
237 R -0.615
238 A -0.864
239 R -0.707
240 L -0.588
241 A -0.781
242 G -0.682
243 E -0.627
244 E -0.566
245 E -0.626
246 A -0.737
247 L -0.590
248 R -0.595
249 Q -0.632
250 Y -0.694
251 Q -0.679
252 Q -0.804
253 R -0.464
254 K -0.654
255 Q -0.523
256 Q -0.607
257 Q -0.618
258 Q -0.805
259 E -0.518
260 G -0.713
261 N -0.595
262 Y -0.494
263 L -0.509
264 Q -0.565
265 H -0.567
266 V -0.732
267 Q -0.458
268 L -0.617
269 D -0.327
270 Q -0.669
271 R -0.497
272 S -0.504
273 L -0.610
274 V -0.675
275 L -0.515
276 N -0.271
277 T -0.787
278 E -0.208
279 P -0.582
280 A -0.449
281 E -0.231
282 C 2.969
283 P -0.657
284 V 1.001
285 C 3.105
286 Y 0.067
287 S -0.369
288 V -0.340
289 L -0.321
290 A -0.531
291 P -0.285
292 G -0.569
293 E -0.407
294 A -0.497
295 V -0.203
296 V -0.537
297 L -0.204
298 R -0.558
299 E -0.376
300 C 0.209
301 L -0.441
302 H 1.772
303 T -0.774
304 F 0.381
305 C 2.991
306 R -0.544
307 E 0.009
308 C 3.879
309 L 0.525
310 Q -0.235
311 G -0.460
312 T -0.031
313 I 0.896
314 R -0.284
315 N -0.313
316 S -0.109
317 Q -0.578
318 E -0.476
319 A -0.598
320 E -0.575
321 V -0.220
322 S -0.454
323 C 0.330
324 P 0.274
325 F -0.584
326 I -0.515
327 D 0.174
328 N -0.373
329 T -0.471
330 Y -0.598
331 S -0.178
332 C 0.718
333 S -0.518
334 G -0.459
335 K -0.748
336 L 0.674
337 L -0.417
338 E -0.430
339 R -0.431
340 E -0.133
341 I 0.621
342 K -0.264
343 A -0.409
344 L -0.173
345 L 1.085
346 T -0.006
347 P -0.198
348 E 0.101
349 D -0.077
350 Y 0.014
351 Q -0.143
352 R 0.156
353 F 0.997
354 L -0.370
355 D -0.171
356 L -0.088
357 G -0.263
358 I -0.049
359 S -0.039
360 I -0.443
361 A -0.448
362 E 0.368
363 N -0.441
364 R -0.229
365 S -0.453
366 A -0.317
367 F -0.406
368 S -0.417
369 Y -0.304
370 H -0.086
371 C 2.484
372 K 0.606
373 T 0.043
374 P -0.064
375 D -0.145
376 C 2.590
377 K -0.477
378 G -0.589
379 W 0.002
380 C 0.406
381 F -0.487
382 F -0.652
383 E 0.205
384 D -0.171
385 D -0.341
386 V -0.449
387 N -0.473
388 E -0.784
389 F 0.267
390 T -0.523
391 C 3.364
392 P -0.057
393 V -0.528
394 C 4.262
395 F -0.478
396 H -0.524
397 V -0.449
398 N 0.682
399 C 4.262
400 L -0.257
401 L -0.634
402 C 3.319
403 K 0.436
404 A 0.055
405 I -0.495
406 H 2.340
407 E -0.436
408 Q 0.034
409 M -0.329
410 N 0.017
411 C 3.370
412 K -0.147
413 E 0.134
414 Y -0.198
415 Q -0.066
416 E 0.033
417 D -0.598
418 L -0.565
419 A -0.720
420 L -0.588
421 R -0.296
422 A -0.558
423 Q -0.500
424 N -0.244
425 D -0.374
426 V -0.652
427 A -0.357
428 A -0.115
429 R -0.246
430 Q -0.451
431 T -0.496
432 T -0.423
433 E 0.211
434 M -0.311
435 L -0.282
436 K -0.342
437 V -0.656
438 M -0.292
439 L -0.379
440 Q -0.422
441 Q -0.415
442 G -0.313
443 E -0.110
444 A 0.229
445 M 0.322
446 R -0.430
447 C 3.677
448 P 0.872
449 Q -0.239
450 C 4.262
451 Q -0.099
452 I -0.122
453 V -0.518
454 V 0.736
455 Q 0.496
456 K 1.142
457 K -0.225
458 D 0.024
459 G 2.567
460 C 2.637
461 D 0.668
462 W 0.424
463 I 1.657
464 R -0.269
465 C 4.262
466 T -0.013
467 V -0.278
468 C 3.827
469 H 0.347
470 T -0.480
471 E -0.436
472 I 0.725
473 C 3.412
474 W 1.357
475 V 0.102
476 T 2.919
477 K 0.248
478 G -0.148
479 P -0.351
480 R -0.390
481 W -0.564
482 G -0.026
483 P -0.206
484 G -0.234
485 G -0.060
486 P -0.355
487 G 0.132
488 D 0.071
489 T -0.269
490 S -0.446
491 G 0.103
492 G 0.170
493 C 1.056
494 R 0.240
495 C 0.572
496 R 0.149
497 V 0.450
498 N -1.000 *
499 G -1.000 *
500 I -1.000 *
501 P -1.000 *
502 C -1.000 *
503 H -1.000 *
504 P -1.000 *
505 S -1.000 *
506 C -1.000 *
507 Q -1.000 *
508 N -1.000 *
509 C -1.000 *
510 H -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 131.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MDEKTKKAEE MALSLTRAVA GGDEQVAMKC AIWLAEQRVP LSVQLKPEVS PTQDIRLWVS
70 80 90 100 110 120
VEDAQMHTVT IWLTVRPDMT VASLKDMVFL DYGFPPVLQQ WVIGQRLARD QETLHSHGVR
130 140 150 160 170 180
QNGDSAYLYL LSARNTSLNP QELQRERQLR MLEDLGFKDL TLQPRGPLEP GPPKPGVPQE
190 200 210 220 230 240
PGRGQPDAVP EPPPVGWQCP GCTFINKPTR PGCEMCCRAR PEAYQVPASY QPDEEERARL
250 260 270 280 290 300
AGEEEALRQY QQRKQQQQEG NYLQHVQLDQ RSLVLNTEPA ECPVCYSVLA PGEAVVLREC
310 320 330 340 350 360
LHTFCRECLQ GTIRNSQEAE VSCPFIDNTY SCSGKLLERE IKALLTPEDY QRFLDLGISI
370 380 390 400 410 420
AENRSAFSYH CKTPDCKGWC FFEDDVNEFT CPVCFHVNCL LCKAIHEQMN CKEYQEDLAL
430 440 450 460 470 480
RAQNDVAARQ TTEMLKVMLQ QGEAMRCPQC QIVVQKKDGC DWIRCTVCHT EICWVTKGPR
490 500 510
WGPGGPGDTS GGCRCRVNGI PCHPSCQNCH
RBCK1 is a RING-IBR protein with both transcriptional and ubiquitin ligas activities. RBCK1 can be found in both the nucleus and the cytoplasm. The N-terminal of RBCK1 was shown to possess a NES and the C-terminal has the nuclear import function, although no classical NLS was identified. When in the nucleus, RBCK1 was shown to interact with proteins in the nuclear bodies (PML and CBP).
[1]. "Nuclear-cytoplasmic shuttling of a RING-IBR protein RBCK1 and its functional interaction with nuclear body proteins."
Tatematsu K, Yoshimoto N, Koyanagi T, Tokunaga C, Tachibana T, Yoneda Y, Yoshida M, Okajima T, Tanizawa K, Kuroda S (2005)
J Biol Chem,
280:22937-44
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.