Show FASTA Format
>gi|74751663|sp|Q93052.1|LPP_HUMAN RecName: Full=Lipoma-preferred partner; AltName: Full=LIM domain-containing preferred translocation partner in lipoma
MSHPSWLPPKSTGEPLGHVPARMETTHSFGNPSISVSTQQPPKKFAPVVAPKPKYNPYKQPGGEGDFLPP
PPPPLDDSSALPSISGNFPPPPPLDEEAFKVQGNPGGKTLEERRSSLDAEIDSLTSILADLECSSPYKPR
PPQSSTGSTASPPVSTPVTGHKRMVIPNQPPLTATKKSTLKPQPAPQAGPIPVAPIGTLKPQPQPVPASY
TTASTSSRPTFNVQVKSAQPSPHYMAAPSSGQIYGSGPQGYNTQPVPVSGQCPPPSTRGGMDYAYIPPPG
LQPEPGYGYAPNQGRYYEGYYAAGPGYGGRNDSDPTYGQQGHPNTWKREPGYTPPGAGNQNPPGMYPVTG
PKKTYITDPVSAPCAPPLQPKGGHSGQLGPSSVAPSFRPEDELEHLTKKMLYDMENPPADEYFGRCARCG
ENVVGEGTGCTAMDQVFHVDCFTCIICNNKLRGQPFYAVEKKAYCEPCYINTLEQCNVCSKPIMERILRA
TGKAYHPHCFTCVMCHRSLDGIPFTVDAGGLIHCIEDFHKKFAPRCSVCKEPIMPAPGQEETVRIVALDR
DFHVHCYRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSARIRVLTAKASTDL
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999999999999999999999766788899996777776999988988899999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MSHPSWLPPKSTGEPLGHVPARMETTHSFGNPSISVSTQQPPKKFAPVVAPKPKYNPYKQ
10 20 30 40 50 60
Conf: 999999999999999999999999998999999883222358999999746578971010
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
AA: PGGEGDFLPPPPPPLDDSSALPSISGNFPPPPPLDEEAFKVQGNPGGKTLEERRSSLDAE
70 80 90 100 110 120
Conf: 244322123477999999999999999999999999976888866899999877989999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: IDSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHKRMVIPNQPPLTATKKSTL
130 140 150 160 170 180
Conf: 999999999999999999999999989998655799999877445799999887899999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KPQPAPQAGPIPVAPIGTLKPQPQPVPASYTTASTSSRPTFNVQVKSAQPSPHYMAAPSS
190 200 210 220 230 240
Conf: 998999999999999999899999998899999889999999999999999999988898
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: GQIYGSGPQGYNTQPVPVSGQCPPPSTRGGMDYAYIPPPGLQPEPGYGYAPNQGRYYEGY
250 260 270 280 290 300
Conf: 879999999999999988999999888999999999999999999999999876668999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: YAAGPGYGGRNDSDPTYGQQGHPNTWKREPGYTPPGAGNQNPPGMYPVTGPKKTYITDPV
310 320 330 340 350 360
Conf: 999999999999999989999899999970456665999864149999775678544689
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AA: SAPCAPPLQPKGGHSGQLGPSSVAPSFRPEDELEHLTKKMLYDMENPPADEYFGRCARCG
370 380 390 400 410 420
Conf: 964458740100456444474114433676689874104994137456886676522599
Pred: CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
AA: ENVVGEGTGCTAMDQVFHVDCFTCIICNNKLRGQPFYAVEKKAYCEPCYINTLEQCNVCS
430 440 450 460 470 480
Conf: 258999999809987999851133677889963145089991123684312587777779
Pred: CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCC
AA: KPIMERILRATGKAYHPHCFTCVMCHRSLDGIPFTVDAGGLIHCIEDFHKKFAPRCSVCK
490 500 510 520 530 540
Conf: 998699998653899990678755655569999888879999844689961455013676
Pred: CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
AA: EPIMPAPGQEETVRIVALDRDFHVHCYRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSAR
550 560 570 580 590 600
Conf: 620165446899
Pred: HHHCCCCCCCCC
AA: IRVLTAKASTDL
610
Show Conservation Score by AL2CO
1 M -1.000 *
2 S -1.000 *
3 H -1.000 *
4 P -1.000 *
5 S -1.000 *
6 W -1.000 *
7 L -1.000 *
8 P -1.000 *
9 P -1.000 *
10 K -1.000 *
11 S -1.000 *
12 T -1.000 *
13 G -1.000 *
14 E -1.000 *
15 P -1.000 *
16 L -1.000 *
17 G -1.000 *
18 H -1.000 *
19 V -1.000 *
20 P -1.000 *
21 A -1.000 *
22 R -1.000 *
23 M -1.000 *
24 E -1.000 *
25 T -1.000 *
26 T -1.000 *
27 H -1.000 *
28 S -1.000 *
29 F -1.000 *
30 G -1.000 *
31 N -1.000 *
32 P -1.000 *
33 S -1.000 *
34 I -1.000 *
35 S -1.000 *
36 V -1.000 *
37 S -1.000 *
38 T -1.000 *
39 Q -1.000 *
40 Q -1.000 *
41 P -1.000 *
42 P -1.000 *
43 K -1.000 *
44 K -1.000 *
45 F -1.000 *
46 A -1.000 *
47 P -1.000 *
48 V -1.000 *
49 V -1.000 *
50 A -1.000 *
51 P -1.000 *
52 K -1.000 *
53 P -1.000 *
54 K -1.000 *
55 Y -1.000 *
56 N -1.000 *
57 P -1.000 *
58 Y -1.000 *
59 K -1.000 *
60 Q -1.000 *
61 P -1.000 *
62 G -1.000 *
63 G -1.000 *
64 E -1.000 *
65 G -1.000 *
66 D -1.000 *
67 F -1.000 *
68 L -1.000 *
69 P -1.000 *
70 P -1.000 *
71 P -1.000 *
72 P -1.000 *
73 P -1.000 *
74 P -1.000 *
75 L -1.000 *
76 D -1.000 *
77 D -1.000 *
78 S -1.000 *
79 S -1.000 *
80 A -1.000 *
81 L -1.000 *
82 P -1.000 *
83 S -1.000 *
84 I -1.000 *
85 S -1.000 *
86 G -1.000 *
87 N -1.000 *
88 F -1.000 *
89 P -1.000 *
90 P -1.000 *
91 P -1.000 *
92 P -1.000 *
93 P -1.000 *
94 L -1.000 *
95 D -1.000 *
96 E -1.000 *
97 E -1.000 *
98 A -1.000 *
99 F -1.000 *
100 K -1.000 *
101 V -1.000 *
102 Q -1.000 *
103 G -1.000 *
104 N -1.000 *
105 P -1.000 *
106 G -1.000 *
107 G -1.000 *
108 K -1.000 *
109 T -1.000 *
110 L -1.000 *
111 E -1.000 *
112 E -1.000 *
113 R -1.000 *
114 R -1.000 *
115 S -1.000 *
116 S -1.000 *
117 L -1.000 *
118 D -1.000 *
119 A -1.000 *
120 E -1.000 *
121 I -1.000 *
122 D -1.000 *
123 S -1.000 *
124 L -1.000 *
125 T -1.000 *
126 S -1.000 *
127 I -1.000 *
128 L -0.036
129 A 0.123
130 D -0.095
131 L -0.243
132 E -0.149
133 C -0.515
134 S -0.409
135 S -0.268
136 P -0.223
137 Y -0.508
138 K -0.662
139 P -0.468
140 R -0.487
141 P -0.331
142 P -0.547
143 Q -0.510
144 S -0.577
145 S -0.498
146 T -0.594
147 G -0.663
148 S -0.491
149 T -0.631
150 A -0.631
151 S -0.589
152 P -0.493
153 P -0.564
154 V -0.750
155 S -0.424
156 T -0.403
157 P -0.536
158 V -0.501
159 T -0.703
160 G -0.582
161 H -0.557
162 K -0.611
163 R -0.612
164 M -0.696
165 V -0.760
166 I -0.751
167 P -0.605
168 N -0.585
169 Q -0.566
170 P -0.605
171 P -0.640
172 L -0.750
173 T -0.720
174 A -0.631
175 T -0.551
176 K -0.423
177 K -0.731
178 S -0.609
179 T -0.395
180 L -0.553
181 K -0.744
182 P -0.464
183 Q -0.543
184 P -0.465
185 A -0.590
186 P -0.513
187 Q -0.622
188 A -0.694
189 G -0.652
190 P -0.497
191 I -0.732
192 P -0.407
193 V -0.773
194 A -0.532
195 P -0.585
196 I -0.817
197 G -0.769
198 T -0.553
199 L -0.727
200 K -0.609
201 P -0.574
202 Q -0.678
203 P -0.493
204 Q -0.529
205 P -0.451
206 V -0.685
207 P -0.633
208 A -0.572
209 S -0.648
210 Y -0.621
211 T -0.737
212 T -0.660
213 A -0.638
214 S -0.569
215 T -0.713
216 S -0.380
217 S -0.546
218 R -0.543
219 P -0.606
220 T -0.532
221 F -0.662
222 N -0.671
223 V -0.700
224 Q -0.707
225 V -0.614
226 K -0.685
227 S -0.786
228 A -0.696
229 Q -0.709
230 P -0.759
231 S -0.507
232 P -0.405
233 H -0.681
234 Y -0.786
235 M -0.624
236 A -0.734
237 A -0.689
238 P -0.508
239 S -0.504
240 S -0.629
241 G -0.646
242 Q -0.599
243 I -0.793
244 Y -0.757
245 G -0.596
246 S -0.550
247 G -0.629
248 P -0.588
249 Q -0.631
250 G -0.595
251 Y -0.655
252 N -0.756
253 T -0.589
254 Q -0.569
255 P -0.473
256 V -0.691
257 P -0.541
258 V -0.634
259 S -0.693
260 G -0.661
261 Q -0.593
262 C -0.768
263 P -0.778
264 P -0.659
265 P -0.585
266 S -0.734
267 T -0.627
268 R -0.793
269 G -0.601
270 G -0.701
271 M -0.753
272 D -0.733
273 Y -0.773
274 A -0.735
275 Y -0.750
276 I -0.664
277 P -0.510
278 P -0.366
279 P -0.445
280 G -0.785
281 L -0.610
282 Q -0.583
283 P -0.585
284 E -0.617
285 P -0.458
286 G -0.674
287 Y -0.602
288 G -0.667
289 Y -0.796
290 A -0.697
291 P -0.513
292 N -0.674
293 Q -0.619
294 G -0.591
295 R -0.799
296 Y -0.745
297 Y -0.736
298 E -0.716
299 G -0.469
300 Y -0.796
301 Y -0.780
302 A -0.588
303 A -0.686
304 G -0.659
305 P -0.548
306 G -0.419
307 Y -0.811
308 G -0.594
309 G -0.558
310 R -0.809
311 N -0.664
312 D -0.707
313 S -0.339
314 D -0.617
315 P -0.670
316 T -0.579
317 Y -0.784
318 G -0.658
319 Q -0.704
320 Q -0.706
321 G -0.614
322 H -0.676
323 P -0.577
324 N -0.564
325 T -0.716
326 W -0.738
327 K -0.589
328 R -0.581
329 E -0.624
330 P -0.610
331 G -0.734
332 Y -0.796
333 T -0.652
334 P -0.450
335 P -0.538
336 G -0.557
337 A -0.745
338 G -0.730
339 N -0.804
340 Q -0.693
341 N -0.432
342 P -0.468
343 P -0.569
344 G -0.624
345 M -0.842
346 Y -0.755
347 P -0.700
348 V -0.762
349 T -0.715
350 G -0.524
351 P -0.599
352 K -0.721
353 K -0.742
354 T -0.586
355 Y -0.769
356 I -0.801
357 T -0.721
358 D -0.573
359 P -0.551
360 V -0.628
361 S -0.567
362 A -0.636
363 P -0.498
364 C -0.658
365 A -0.599
366 P -0.458
367 P -0.674
368 L -0.666
369 Q -0.766
370 P -0.655
371 K -0.631
372 G -0.772
373 G -0.715
374 H -0.630
375 S -0.724
376 G -0.559
377 Q -0.577
378 L -0.517
379 G -0.602
380 P -0.406
381 S -0.593
382 S -0.710
383 V -0.712
384 A -0.592
385 P -0.446
386 S -0.532
387 F -0.713
388 R -0.500
389 P -0.163
390 E -0.129
391 D -0.386
392 E -0.402
393 L -0.251
394 E -0.205
395 H -0.650
396 L -0.217
397 T 0.028
398 K -0.207
399 K -0.410
400 M -0.548
401 L -0.240
402 Y -0.553
403 D -0.427
404 M -0.489
405 E -0.063
406 N -0.536
407 P -0.448
408 P -0.312
409 A -0.487
410 D -0.383
411 E -0.376
412 Y -0.462
413 F -0.554
414 G 0.059
415 R -0.608
416 C 1.898
417 A -0.137
418 R -0.528
419 C 2.545
420 G 0.259
421 E -0.265
422 N -0.253
423 V 0.944
424 V -0.285
425 G 0.400
426 E -0.201
427 G -0.046
428 T -0.204
429 G 0.013
430 C 0.389
431 T 0.106
432 A 0.481
433 M 0.071
434 D 0.558
435 Q -0.009
436 V 0.077
437 F 0.793
438 H 1.945
439 V 0.203
440 D -0.190
441 C 1.009
442 F 1.253
443 T -0.001
444 C 1.804
445 I -0.599
446 I -0.450
447 C 1.505
448 N -0.162
449 N -0.299
450 K -0.411
451 L 1.713
452 R 0.144
453 G 0.486
454 Q -0.158
455 P -0.199
456 F 1.305
457 Y 0.653
458 A -0.447
459 V -0.216
460 E 0.112
461 K 0.778
462 K -0.042
463 A 0.558
464 Y 0.747
465 C 3.108
466 E 0.668
467 P -0.303
468 C 1.860
469 Y 2.019
470 I -0.222
471 N -0.241
472 T 0.191
473 L 0.908
474 E 0.615
475 Q 0.037
476 C 3.006
477 N 0.180
478 V -0.430
479 C 3.623
480 S -0.328
481 K -0.185
482 P 0.368
483 I 2.882
484 M 0.810
485 E 1.158
486 R -0.014
487 I 0.108
488 L 1.592
489 R 0.389
490 A 2.676
491 T 1.317
492 G 0.980
493 K 0.893
494 A 0.259
495 Y 1.965
496 H 3.623
497 P 0.523
498 H 0.101
499 C 2.177
500 F 2.613
501 T 0.104
502 C 3.623
503 V 0.429
504 M -0.079
505 C 3.623
506 H -0.032
507 R -0.486
508 S -0.125
509 L 2.660
510 D 0.594
511 G 0.907
512 I -0.071
513 P -0.056
514 F 1.757
515 T 0.965
516 V 0.374
517 D 1.629
518 A -0.529
519 G -0.113
520 G 0.726
521 L 0.580
522 I 1.092
523 H 1.609
524 C 3.623
525 I 0.257
526 E -0.027
527 D 2.080
528 F 1.621
529 H 0.317
530 K 0.215
531 K 0.085
532 F 1.292
533 A 1.566
534 P 1.454
535 R 0.696
536 C 3.047
537 S 0.305
538 V 0.613
539 C 3.047
540 K -0.420
541 E -0.185
542 P 1.655
543 I 2.364
544 M 0.585
545 P 1.440
546 A 0.063
547 P 0.512
548 G 1.745
549 Q 0.528
550 E 1.249
551 E 1.952
552 T 2.140
553 V 1.582
554 R 1.424
555 I 2.047
556 V 1.118
557 A 2.638
558 L 1.380
559 D 1.059
560 R 0.886
561 D 0.846
562 F 1.969
563 H 3.623
564 V 0.488
565 H -0.156
566 C 2.547
567 Y 2.580
568 R 0.468
569 C 3.623
570 E 1.040
571 D 0.600
572 C 3.623
573 G 0.093
574 G -0.222
575 L 0.132
576 L 2.303
577 S 1.071
578 E 0.662
579 G 0.456
580 D 0.754
581 N 0.811
582 Q -0.026
583 G 0.257
584 C 2.610
585 Y 1.526
586 P 1.466
587 L 1.242
588 D 0.560
589 G 0.553
590 H 0.932
591 I 1.512
592 L 1.679
593 C 3.060
594 K 0.577
595 T -0.248
596 C 2.127
597 N 0.899
598 S 0.098
599 A -0.225
600 R 0.711
601 I 0.724
602 R 0.155
603 V -0.323
604 L -1.000 *
605 T -1.000 *
606 A -1.000 *
607 K -1.000 *
608 A -1.000 *
609 S -1.000 *
610 T -1.000 *
611 D -1.000 *
612 L -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 138.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MSHPSWLPPK STGEPLGHVP ARMETTHSFG NPSISVSTQQ PPKKFAPVVA PKPKYNPYKQ
70 80 90 100 110 120
PGGEGDFLPP PPPPLDDSSA LPSISGNFPP PPPLDEEAFK VQGNPGGKTL EERRSSLDAE
130 140 150 160 170 180
IDSLTSILAD LECSSPYKPR PPQSSTGSTA SPPVSTPVTG HKRMVIPNQP PLTATKKSTL
190 200 210 220 230 240
KPQPAPQAGP IPVAPIGTLK PQPQPVPASY TTASTSSRPT FNVQVKSAQP SPHYMAAPSS
250 260 270 280 290 300
GQIYGSGPQG YNTQPVPVSG QCPPPSTRGG MDYAYIPPPG LQPEPGYGYA PNQGRYYEGY
310 320 330 340 350 360
YAAGPGYGGR NDSDPTYGQQ GHPNTWKREP GYTPPGAGNQ NPPGMYPVTG PKKTYITDPV
370 380 390 400 410 420
SAPCAPPLQP KGGHSGQLGP SSVAPSFRPE DELEHLTKKM LYDMENPPAD EYFGRCARCG
430 440 450 460 470 480
ENVVGEGTGC TAMDQVFHVD CFTCIICNNK LRGQPFYAVE KKAYCEPCYI NTLEQCNVCS
490 500 510 520 530 540
KPIMERILRA TGKAYHPHCF TCVMCHRSLD GIPFTVDAGG LIHCIEDFHK KFAPRCSVCK
550 560 570 580 590 600
EPIMPAPGQE ETVRIVALDR DFHVHCYRCE DCGGLLSEGD NQGCYPLDGH ILCKTCNSAR
610
IRVLTAKAST DL
LPP contains a proline-rich N-terminal domain and three LIM domains located at the C-terminal. LPP localizes in focal adhesions and in cell-to-cell contacts. LPP is the preferred translocation partner of the HMGIC gene in lipomas. It also possesses transcriptional activation activity.
[1]. "LPP, an actin cytoskeleton protein related to zyxin, harbors a nuclear export signal and transcriptional activation capacity"
Petit MM, Fradelizi J, Golsteyn RM, Ayoubi TA, Menichi B, Louvard D, Van de Ven WJ, Friederich E. (2000)
Mol Biol Cell,
11:117-129
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.