Show FASTA Format
>gi|137644|sp|P04014.1|VE1_HPV11 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1
MADDSGTENEGSGCTGWFMVEAIVEHTTGTQISEDEEEEVEDSGYDMVDFIDDRHITQNSVEAQALFNRQ
EADAHYATVQDLKRKYLGSPYVSPISNVANAVESEISPRLDAIKLTTQPKKVKRRLFETRELTDSGYGYS
EVEAATQVEKHGDPENGGDGQERDTGRDIEGEGVEHREAEAVDDSTREHADTSGILELLKCKDIRSTLHG
KFKDCFGLSFVDLIRPFKSDRTTCADWVVAGFGIHHSIADAFQKLIEPLSLYAHIQWLTNAWGMVLLVLI
RFKVNKSRCTVARTLGTLLNIPENHMLIEPPKIQSGVRALYWFRTGISNASTVIGEAPEWITRQTVIEHS
LADSQFKLTEMVQWAYDNDICEESEIAFEYAQRGDFDSNARAFLNSNMQAKYVKDCAIMCRHYKHAEMKK
MSIKQWIKYRGTKVDSVGNWKPIVQFLRHQNIEFIPFLSKLKLWLHGTPKKNCIAIVGPPDTGKSCFCMS
LIKFLGGTVISYVNSCSHFWLQPLTDAKVALLDDATQPCWTYMDTYMRNLLDGNPMSIDRKHRALTLIKC
PPLLVTSNIDISKEEKYKYLHSRVTTFTFPNPFPFDRNGNAVYELSDANWKCFFERLSSSLDIEDSEDEE
DGSNSQAFRCVPGSVVRTL
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999999999999844249999887447799999773100014767645643488576785
Pred: CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MADDSGTENEGSGCTGWFMVEAIVEHTTGTQISEDEEEEVEDSGYDMVDFIDDRHITQNS
10 20 30 40 50 60
Conf: 469999999999999999987231688999999876643333335795446175048999
Pred: HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
AA: VEAQALFNRQEADAHYATVQDLKRKYLGSPYVSPISNVANAVESEISPRLDAIKLTTQPK
70 80 90 100 110 120
Conf: 845335678999999888542000211220688899999987787765567775445554
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: KVKRRLFETRELTDSGYGYSEVEAATQVEKHGDPENGGDGQERDTGRDIEGEGVEHREAE
130 140 150 160 170 180
Conf: 346755678873658898610287889996211000565554323578896788685479
Pred: CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
AA: AVDDSTREHADTSGILELLKCKDIRSTLHGKFKDCFGLSFVDLIRPFKSDRTTCADWVVA
190 200 210 220 230 240
Conf: 814571389999865330241889974125621356655524576689999998531029
Pred: EECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCC
AA: GFGIHHSIADAFQKLIEPLSLYAHIQWLTNAWGMVLLVLIRFKVNKSRCTVARTLGTLLN
250 260 270 280 290 300
Conf: 777830138999861035565425225786536079608999984201233687444025
Pred: CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHCCCCCCCCEEEHH
AA: IPENHMLIEPPKIQSGVRALYWFRTGISNASTVIGEAPEWITRQTVIEHSLADSQFKLTE
310 320 330 340 350 360
Conf: 556553099873308999987518989218999734788336888999988777899702
Pred: HHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
AA: MVQWAYDNDICEESEIAFEYAQRGDFDSNARAFLNSNMQAKYVKDCAIMCRHYKHAEMKK
370 380 390 400 410 420
Conf: 999999999722668889827788774048867178999998875499997658997589
Pred: CCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCC
AA: MSIKQWIKYRGTKVDSVGNWKPIVQFLRHQNIEFIPFLSKLKLWLHGTPKKNCIAIVGPP
430 440 450 460 470 480
Conf: 997357887898884893989632898312244234534210378513455468774203
Pred: CCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHC
AA: DTGKSCFCMSLIKFLGGTVISYVNSCSHFWLQPLTDAKVALLDDATQPCWTYMDTYMRNL
490 500 510 520 530 540
Conf: 799940011356544333589807620389799865411001204446599978999998
Pred: CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
AA: LDGNPMSIDRKHRALTLIKCPPLLVTSNIDISKEEKYKYLHSRVTTFTFPNPFPFDRNGN
550 560 570 580 590 600
Conf: 1078065145789999742148999866579999997110279999899
Pred: CEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
AA: AVYELSDANWKCFFERLSSSLDIEDSEDEEDGSNSQAFRCVPGSVVRTL
610 620 630 640
Show Conservation Score by AL2CO
1 M 2.718
2 A 0.316
3 D 0.034
4 D -0.814
5 S -0.261
6 G 1.460
7 T 0.082
8 E -0.753
9 N -0.963
10 E -1.079
11 G -0.915
12 S -1.008
13 G -0.723
14 C -0.885
15 T -0.397
16 G -0.274
17 W 0.153
18 F -0.053
19 M -0.719
20 V -0.664
21 E 0.039
22 A -0.128
23 I -0.413
24 V -0.080
25 E -0.558
26 H -0.887
27 T -1.141
28 T -0.451
29 G -0.761
30 T -0.910
31 Q -1.000
32 I -0.867
33 S -0.726
34 E -0.706
35 D -0.867
36 E -0.365
37 E -1.155
38 E -0.913
39 E -0.917
40 V -1.003
41 E -0.972
42 D -0.729
43 S -0.750
44 G -0.842
45 Y -0.650
46 D -0.514
47 M -0.458
48 V -0.632
49 D 0.026
50 F 0.659
51 I 0.705
52 D 0.810
53 D 0.419
54 R -0.678
55 H -1.037
56 I -1.002
57 T -1.082
58 Q -0.837
59 N -0.704
60 S -0.512
61 V -0.582
62 E -0.783
63 A -0.066
64 Q -0.413
65 A -0.361
66 L 0.858
67 F 0.598
68 N -0.582
69 R -0.821
70 Q 0.737
71 E -0.698
72 A -0.922
73 D -0.948
74 A -0.245
75 H -0.505
76 Y -0.835
77 A -0.986
78 T -0.832
79 V 0.191
80 Q -0.760
81 D -1.150
82 L 0.318
83 K 2.320
84 R 1.976
85 K 1.742
86 Y 0.448
87 L -0.958
88 G -1.096
89 S -0.178
90 P -0.085
91 Y -0.989
92 V -1.062
93 S -0.678
94 P -0.845
95 I -1.000 *
96 S -1.000 *
97 N -1.000 *
98 V -1.000 *
99 A -1.000 *
100 N -1.000 *
101 A -1.000 *
102 V -0.716
103 E -0.772
104 S -1.056
105 E -0.550
106 I -0.241
107 S 0.252
108 P 0.567
109 R -0.239
110 L -0.367
111 D -0.820
112 A -0.553
113 I -0.560
114 K -0.498
115 L -0.198
116 T -0.605
117 T -0.758
118 Q -0.775
119 P -0.756
120 K -0.831
121 K -0.732
122 V -0.605
123 K 0.464
124 R 0.655
125 R -0.064
126 L 0.168
127 F -0.134
128 E -0.984
129 T -0.710
130 R -1.000 *
131 E -1.000 *
132 L -1.000 *
133 T -0.919
134 D 0.248
135 S 0.135
136 G -0.196
137 Y -0.376
138 G -0.633
139 Y -0.900
140 S -0.718
141 E -0.882
142 V -0.970
143 E -0.805
144 A -0.957
145 A -1.097
146 T -1.120
147 Q -0.975
148 V -0.898
149 E -0.926
150 K -0.893
151 H -0.988
152 G -1.167
153 D -1.034
154 P -1.099
155 E -0.993
156 N -0.979
157 G -1.139
158 G -1.052
159 D -1.202
160 G -1.122
161 Q -1.045
162 E -1.008
163 R -1.004
164 D -0.945
165 T -1.166
166 G -1.021
167 R -0.993
168 D -0.912
169 I -1.220
170 E -0.940
171 G -0.810
172 E -1.063
173 G -1.080
174 V -0.978
175 E -0.866
176 H -1.047
177 R -1.195
178 E -1.017
179 A -1.107
180 E -1.054
181 A -1.024
182 V -1.003
183 D -1.103
184 D -1.098
185 S -1.100
186 T -1.073
187 R -1.124
188 E -1.118
189 H -0.994
190 A -1.129
191 D -0.986
192 T -1.160
193 S -1.201
194 G -1.068
195 I -0.891
196 L -1.023
197 E -0.913
198 L 0.040
199 L 0.570
200 K -0.653
201 C -0.711
202 K -0.688
203 D 0.129
204 I -1.051
205 R -0.657
206 S -0.267
207 T -0.867
208 L -0.739
209 H 0.159
210 G -0.643
211 K -0.429
212 F 0.650
213 K 0.978
214 D -0.710
215 C -1.059
216 F 0.430
217 G -0.487
218 L 0.349
219 S 0.109
220 F 0.594
221 V -0.874
222 D 0.642
223 L 1.390
224 I 0.328
225 R 2.316
226 P -0.830
227 F 1.802
228 K 0.384
229 S 1.922
230 D 0.180
231 R 0.908
232 T 1.816
233 T -0.456
234 C 0.152
235 A -1.306
236 D -0.507
237 W 2.223
238 V 0.500
239 V -0.309
240 A -0.545
241 G -0.087
242 F -0.505
243 G -0.492
244 I -0.184
245 H -1.034
246 H -0.765
247 S -0.884
248 I -0.450
249 A -0.745
250 D -0.325
251 A -0.214
252 F -0.398
253 Q -0.894
254 K -0.845
255 L -0.423
256 I 0.498
257 E -0.691
258 P -0.709
259 L -0.709
260 S 0.222
261 L -0.975
262 Y 0.399
263 A -0.623
264 H -0.405
265 I -0.779
266 Q -0.846
267 W -1.190
268 L -1.221
269 T -0.903
270 N -0.937
271 A -0.980
272 W -1.240
273 G -0.669
274 M -1.027
275 V -0.696
276 L -0.691
277 L 0.572
278 V -0.322
279 L -0.210
280 I -0.008
281 R -0.886
282 F 0.600
283 K -0.529
284 V -0.305
285 N -0.576
286 K 2.316
287 S 0.889
288 R 1.573
289 C -0.633
290 T 1.045
291 V 0.910
292 A -1.169
293 R 0.281
294 T -0.629
295 L -0.011
296 G -0.842
297 T -0.803
298 L -0.399
299 L 0.287
300 N -0.923
301 I -0.211
302 P -0.901
303 E -0.680
304 N -1.313
305 H -0.785
306 M -0.017
307 L -0.026
308 I -0.056
309 E 0.441
310 P 2.718
311 P 2.718
312 K 1.014
313 I -0.613
314 Q 0.545
315 S 0.451
316 G -0.456
317 V -0.143
318 R 0.321
319 A 1.142
320 L 0.351
321 Y 1.054
322 W 0.929
323 F 0.332
324 R 0.628
325 T -0.909
326 G -0.597
327 I -0.476
328 S -0.815
329 N -0.471
330 A -0.924
331 S -0.429
332 T -0.956
333 V -0.684
334 I -0.936
335 G 1.888
336 E -0.714
337 A -0.593
338 P 1.792
339 E -0.550
340 W 1.659
341 I 0.708
342 T -0.790
343 R -0.200
344 Q 0.229
345 T 0.556
346 V -0.466
347 I 0.317
348 E -0.335
349 H -0.164
350 S -0.791
351 L -1.044
352 A -0.508
353 D -0.270
354 S -0.662
355 Q -0.604
356 F 2.718
357 K -0.414
358 L 1.272
359 T 0.368
360 E -0.827
361 M 1.602
362 V 1.783
363 Q 2.718
364 W 1.408
365 A 1.687
366 Y 0.966
367 D 2.718
368 N 0.266
369 D -0.109
370 I -0.145
371 C -1.064
372 E 0.662
373 E 1.810
374 S -0.259
375 E -0.687
376 I 0.825
377 A 1.967
378 F 1.163
379 E -0.586
380 Y 2.316
381 A 2.718
382 Q -0.527
383 R -0.738
384 G 1.360
385 D -0.465
386 F -0.661
387 D 0.689
388 S -0.762
389 N 2.718
390 A 2.189
391 R -0.662
392 A 1.424
393 F 1.228
394 L 2.718
395 N -0.118
396 S 0.334
397 N 0.645
398 M -0.201
399 Q 2.315
400 A 0.039
401 K 0.929
402 Y 0.125
403 V 1.431
404 K 0.885
405 D 1.062
406 C 0.957
407 A -0.260
408 I -0.883
409 M 1.970
410 C 0.870
411 R 0.329
412 H 0.383
413 Y 1.717
414 K -0.052
415 H 0.098
416 A 0.119
417 E 0.172
418 M 0.023
419 K -0.509
420 K -0.579
421 M 1.155
422 S 0.442
423 I 0.311
424 K -0.368
425 Q -0.290
426 W 0.935
427 I 1.332
428 K -0.967
429 Y -0.750
430 R 0.098
431 G -0.359
432 T -0.846
433 K -0.886
434 V -0.652
435 D -0.812
436 S -0.347
437 V -0.611
438 G 0.103
439 N -0.282
440 W 1.800
441 K 0.244
442 P -0.908
443 I 1.493
444 V -0.338
445 Q -0.742
446 F 0.718
447 L 0.885
448 R 0.716
449 H 0.413
450 Q 1.608
451 N -0.403
452 I 0.969
453 E -0.084
454 F -0.013
455 I -0.402
456 P -1.093
457 F 1.425
458 L 0.350
459 S -0.978
460 K -0.750
461 L 0.868
462 K 0.255
463 L -0.991
464 W 0.368
465 L 0.677
466 H -0.322
467 G -0.267
468 T -0.260
469 P 1.450
470 K 1.972
471 K 0.433
472 N 0.031
473 C 1.374
474 I 0.854
475 A 0.517
476 I 0.808
477 V -0.583
478 G 2.318
479 P 0.191
480 P 1.103
481 D 1.769
482 T 1.455
483 G 2.718
484 K 2.718
485 S 1.981
486 C -0.711
487 F 1.586
488 C 0.020
489 M -0.116
490 S 0.355
491 L 1.529
492 I 0.215
493 K -0.528
494 F 0.032
495 L 0.256
496 G -0.285
497 G 2.315
498 T -0.374
499 V 0.970
500 I 1.049
501 S 1.035
502 Y 0.105
503 V -0.243
504 N 1.660
505 S -0.054
506 C -0.525
507 S 1.853
508 H 0.385
509 F 2.718
510 W 2.064
511 L 1.153
512 Q 0.335
513 P 1.777
514 L 0.769
515 T -1.078
516 D 0.005
517 A 0.555
518 K 1.833
519 V -0.094
520 A 1.165
521 L 0.191
522 L 1.047
523 D 2.718
524 D 2.718
525 A 0.985
526 T 2.315
527 Q -1.223
528 P -0.754
529 C 0.310
530 W 1.116
531 T -0.953
532 Y 1.490
533 M -0.116
534 D 1.537
535 T -0.785
536 Y 0.863
537 M 1.062
538 R 2.316
539 N 0.567
540 L 0.061
541 L 0.337
542 D 1.968
543 G 2.316
544 N 0.619
545 P -1.066
546 M 0.152
547 S 0.887
548 I 0.604
549 D 2.718
550 R -0.574
551 K 2.316
552 H 1.279
553 R 1.103
554 A -0.377
555 L 0.451
556 T -0.383
557 L 0.885
558 I -0.097
559 K -0.141
560 C 0.161
561 P 1.968
562 P 1.249
563 L 0.634
564 L 0.501
565 V 0.424
566 T 1.704
567 S 1.536
568 N 2.718
569 I -0.526
570 D -0.051
571 I 0.433
572 S -1.171
573 K -0.709
574 E -0.128
575 E -0.782
576 K -0.441
577 Y 0.512
578 K -0.798
579 Y 1.640
580 L 1.578
581 H -0.697
582 S 1.414
583 R 2.180
584 V 0.235
585 T -0.846
586 T -0.768
587 F 0.475
588 T -0.918
589 F 2.189
590 P -0.936
591 N -0.549
592 P -0.540
593 F 0.313
594 P 0.528
595 F -0.104
596 D -0.538
597 R -0.811
598 N -0.859
599 G 0.366
600 N -0.647
601 A 0.485
602 V -0.732
603 Y 0.694
604 E -1.079
605 L 0.990
606 S 0.059
607 D -0.606
608 A -0.984
609 N -0.187
610 W 2.316
611 K 0.354
612 C -0.218
613 F 2.125
614 F 1.665
615 E -0.723
616 R 0.893
617 L 0.064
618 S -0.330
619 S -0.988
620 S -0.279
621 L 1.698
622 D -0.141
623 I 0.429
624 E -0.714
625 D -0.789
626 S -0.701
627 E -0.264
628 D -0.277
629 E -0.617
630 E -0.688
631 D -0.199
632 G 0.051
633 S -1.030
634 N -0.466
635 S -1.165
636 Q -0.719
637 A 0.310
638 F 0.637
639 R -0.051
640 C 0.550
641 V -0.738
642 P 0.137
643 G 0.557
644 S -0.785
645 V -0.397
646 V -0.511
647 R -0.447
648 T -0.518
649 L 1.244
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 140.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MADDSGTENE GSGCTGWFMV EAIVEHTTGT QISEDEEEEV EDSGYDMVDF IDDRHITQNS
70 80 90 100 110 120
VEAQALFNRQ EADAHYATVQ DLKRKYLGSP YVSPISNVAN AVESEISPRL DAIKLTTQPK
130 140 150 160 170 180
KVKRRLFETR ELTDSGYGYS EVEAATQVEK HGDPENGGDG QERDTGRDIE GEGVEHREAE
190 200 210 220 230 240
AVDDSTREHA DTSGILELLK CKDIRSTLHG KFKDCFGLSF VDLIRPFKSD RTTCADWVVA
250 260 270 280 290 300
GFGIHHSIAD AFQKLIEPLS LYAHIQWLTN AWGMVLLVLI RFKVNKSRCT VARTLGTLLN
310 320 330 340 350 360
IPENHMLIEP PKIQSGVRAL YWFRTGISNA STVIGEAPEW ITRQTVIEHS LADSQFKLTE
370 380 390 400 410 420
MVQWAYDNDI CEESEIAFEY AQRGDFDSNA RAFLNSNMQA KYVKDCAIMC RHYKHAEMKK
430 440 450 460 470 480
MSIKQWIKYR GTKVDSVGNW KPIVQFLRHQ NIEFIPFLSK LKLWLHGTPK KNCIAIVGPP
490 500 510 520 530 540
DTGKSCFCMS LIKFLGGTVI SYVNSCSHFW LQPLTDAKVA LLDDATQPCW TYMDTYMRNL
550 560 570 580 590 600
LDGNPMSIDR KHRALTLIKC PPLLVTSNID ISKEEKYKYL HSRVTTFTFP NPFPFDRNGN
610 620 630 640
AVYELSDANW KCFFERLSSS LDIEDSEDEE DGSNSQAFRC VPGSVVRTL
HPV E1 protein is a helicase necessary for the viral DNA replication. In addition, it interacts with other replication factors to proliferate the viral episome. Nuclear export of E1 is not necessary for viral DNA replication, but important for long-term maintenance of the HPV genome over multiple divisions of infected cells. E1 protein is phosphorylated by multiple CDK in vitro and mutation of phosphorylation targets severely comprise its activity. Deng et al. showed that E1 has a potent NES, which is inactivated by CDK phosphorylation of two serines upstream of NES. Fradet-Turcotte et al. showed that E1 protein of HPV31 has a very similar NES (UniProt: P17382). Increased nuclear accumulation of E1 results in reduced cell proliferation due to a delayed cell-cycle progression in S-phase.
[1]. "Cyclin/CDK regulates the nucleocytoplasmic localization of the human papillomavirus E1 DNA helicase"
Deng W, Lin BY, Jin G, Wheeler CG, Ma T, Harper JW, Broker TR, Chow LT. (2004)
J. Virol.,
78:13954-13965
PubMed[2]. "Nuclear export of HPV31 E1 is regulated by Cdk2 phosphorylation and required for viral genome maintenance."
Fradet-Turcotte A, Moody C, Laimins LA, Archambault J. (2010)
J Virol,
84:11747-60
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.