Amyloid beta A4 precursor protein-binding family A member 3
UniProt
Show FASTA Format
>gi|6226953|sp|O96018.1|APBA3_HUMAN RecName: Full=Amyloid beta A4 precursor protein-binding family A member 3; AltName: Full=Adapter protein X11gamma; AltName: Full=Neuron-specific X11L2 protein; AltName: Full=Neuronal Munc18-1-interacting protein 3; Short=Mint-3
MDFPTISRSPSGPPAMDLEGPRDILVPSEDLTPDSQWDPMPGGPGSLSRMELDESSLQELVQQFEALPGD
LVGPSPGGAPCPLHIATGHGLASQEIADAHGLLSAEAGRDDLLGLLHCEECPPSQTGPEEPLEPAPRLLQ
PPEDPDEDSDSPEWVEGASAEQEGSRSSSSSPEPWLETVPLVTPEEPPAGAQSPETLASYPAPQEVPGPC
DHEDLLDGVIFGARYLGSTQLVSERNPPTSTRMAQAREAMDRVKAPDGETQPMTEVDLFVSTKRIKVLTA
DSQEAMMDHALHTISYTADIGCVLVLMARRRLARRPAPQDHGRRLYKMLCHVFYAEDAQLIAQAIGQAFA
AAYSQFLRESGIDPSQVGVHPSPGACHLHNGDLDHFSNSDNCREVHLEKRRGEGLGVALVESGWGSLLPT
AVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPPVTTAIIHR
PHAREQLGFCVEDGIICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMPA
ATYRLLTGQEQPVYL
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 999989999999998898999988999999999998999999999998456783158999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AA: MDFPTISRSPSGPPAMDLEGPRDILVPSEDLTPDSQWDPMPGGPGSLSRMELDESSLQEL
10 20 30 40 50 60
Conf: 998751799989999999999763123799875110100155321258322123444567
Pred: HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
AA: VQQFEALPGDLVGPSPGGAPCPLHIATGHGLASQEIADAHGLLSAEAGRDDLLGLLHCEE
70 80 90 100 110 120
Conf: 899999999999999866799999998899973244898766899999999987655788
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: CPPSQTGPEEPLEPAPRLLQPPEDPDEDSDSPEWVEGASAEQEGSRSSSSSPEPWLETVP
130 140 150 160 170 180
Conf: 999999999999987668999999999999987844440651024575001237999910
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCH
AA: LVTPEEPPAGAQSPETLASYPAPQEVPGPCDHEDLLDGVIFGARYLGSTQLVSERNPPTS
190 200 210 220 230 240
Conf: 355556998511448999999861133101330111036523666302554124554314
Pred: HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEECCCCCHHHHHHCCCCCEEEEEEEC
AA: TRMAQAREAMDRVKAPDGETQPMTEVDLFVSTKRIKVLTADSQEAMMDHALHTISYTADI
250 260 270 280 290 300
Conf: 981489651489899999987899741101320104789999998689999789999980
Pred: CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: GCVLVLMARRRLARRPAPQDHGRRLYKMLCHVFYAEDAQLIAQAIGQAFAAAYSQFLRES
310 320 330 340 350 360
Conf: 998898754589996444654221010137850278842379862169997078776026
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHH
AA: GIDPSQVGVHPSPGACHLHNGDLDHFSNSDNCREVHLEKRRGEGLGVALVESGWGSLLPT
370 380 390 400 410 420
Conf: 565450468931113788877416745396456887589889998147887069986538
Pred: HHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC
AA: AVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC
430 440 450 460 470 480
Conf: 981357872488888651365156286305785001366212312587769231015358
Pred: CCEEEEEEECCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCHH
AA: PPVTTAIIHRPHAREQLGFCVEDGIICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHA
490 500 510 520 530 540
Conf: 99999741678289984349999998435687679
Pred: HHHHHHHHCCCEEEEEECHHHHHHHHHCCCCCCCC
AA: RIIELLTEAYGEVHIKTMPAATYRLLTGQEQPVYL
550 560 570
Show Conservation Score by AL2CO
1 M -1.000 *
2 D -1.000 *
3 F -1.000 *
4 P -1.000 *
5 T -1.000 *
6 I -1.000 *
7 S -1.000 *
8 R -1.000 *
9 S -1.000 *
10 P -1.000 *
11 S -1.000 *
12 G -1.000 *
13 P -1.000 *
14 P -1.000 *
15 A -1.000 *
16 M -1.000 *
17 D -1.000 *
18 L -1.000 *
19 E -1.000 *
20 G -1.000 *
21 P -1.000 *
22 R -1.000 *
23 D -1.000 *
24 I -1.000 *
25 L -1.000 *
26 V -1.000 *
27 P -1.000 *
28 S -1.000 *
29 E -1.000 *
30 D -1.000 *
31 L -1.000 *
32 T -1.000 *
33 P -1.000 *
34 D -1.000 *
35 S -1.000 *
36 Q -1.000 *
37 W -1.000 *
38 D -1.000 *
39 P -1.000 *
40 M -1.000 *
41 P -1.000 *
42 G -1.000 *
43 G -1.000 *
44 P -1.000 *
45 G -1.000 *
46 S -1.000 *
47 L -1.000 *
48 S -1.000 *
49 R -1.000 *
50 M -1.000 *
51 E -1.000 *
52 L -1.000 *
53 D -1.000 *
54 E -1.000 *
55 S -1.000 *
56 S -1.000 *
57 L -1.000 *
58 Q -1.000 *
59 E -1.000 *
60 L -1.000 *
61 V -1.000 *
62 Q -1.000 *
63 Q -1.000 *
64 F -1.000 *
65 E -1.000 *
66 A -1.000 *
67 L -1.000 *
68 P -1.000 *
69 G -1.000 *
70 D -1.000 *
71 L -1.000 *
72 V -1.000 *
73 G -1.000 *
74 P -1.000 *
75 S -1.000 *
76 P -1.000 *
77 G -1.000 *
78 G -1.000 *
79 A -1.000 *
80 P -1.000 *
81 C -1.000 *
82 P -1.000 *
83 L -1.000 *
84 H -1.000 *
85 I -1.000 *
86 A -1.000 *
87 T -1.000 *
88 G -1.000 *
89 H -1.000 *
90 G -1.000 *
91 L -1.000 *
92 A -1.000 *
93 S -1.000 *
94 Q -1.000 *
95 E -1.000 *
96 I -1.000 *
97 A -1.000 *
98 D -1.000 *
99 A -1.000 *
100 H -1.000 *
101 G -1.000 *
102 L -1.000 *
103 L -1.000 *
104 S -1.000 *
105 A -1.000 *
106 E -1.000 *
107 A -1.000 *
108 G -1.000 *
109 R -1.000 *
110 D -1.000 *
111 D -1.000 *
112 L -1.000 *
113 L -1.000 *
114 G -1.000 *
115 L -1.000 *
116 L -1.000 *
117 H -1.000 *
118 C -1.000 *
119 E -1.000 *
120 E -1.000 *
121 C -1.000 *
122 P -1.000 *
123 P -0.350
124 S -0.528
125 Q -0.875
126 T -0.746
127 G -0.963
128 P -0.462
129 E -1.072
130 E -1.164
131 P -0.049
132 L -0.681
133 E -0.689
134 P -1.137
135 A -0.799
136 P -0.699
137 R -0.952
138 L -1.115
139 L -0.901
140 Q -1.097
141 P -0.994
142 P -0.991
143 E -0.868
144 D -0.980
145 P -0.931
146 D -1.070
147 E -0.976
148 D -0.937
149 S -1.208
150 D -1.186
151 S -1.332
152 P -0.866
153 E -1.469
154 W -1.536
155 V -1.255
156 E -1.446
157 G -1.043
158 A -1.429
159 S -1.453
160 A -0.892
161 E -1.062
162 Q -1.090
163 E -1.247
164 G -1.181
165 S -1.425
166 R -1.216
167 S -1.060
168 S -1.247
169 S -1.169
170 S -0.812
171 S -0.530
172 P -0.752
173 E -0.745
174 P -0.706
175 W -1.258
176 L -1.460
177 E -1.453
178 T -1.198
179 V -1.484
180 P -1.157
181 L -1.265
182 V -1.527
183 T -1.603
184 P -0.999
185 E -0.479
186 E -0.696
187 P -0.975
188 P -0.848
189 A -1.390
190 G -1.173
191 A -1.281
192 Q -1.070
193 S -0.837
194 P -0.732
195 E -0.864
196 T -0.976
197 L -1.048
198 A -1.039
199 S -0.735
200 Y -1.507
201 P -0.560
202 A -0.910
203 P -1.185
204 Q -0.823
205 E -0.860
206 V -0.098
207 P -0.575
208 G -1.008
209 P -0.270
210 C -1.130
211 D -0.511
212 H 0.006
213 E 0.460
214 D 0.128
215 L 1.664
216 L 0.406
217 D 0.160
218 G 2.415
219 V 0.801
220 I 0.678
221 F 1.300
222 G -0.459
223 A 0.815
224 R -0.580
225 Y 1.414
226 L 1.420
227 G 1.499
228 S 1.275
229 T 0.665
230 Q 0.988
231 L 1.246
232 V -0.962
233 S -0.631
234 E 0.497
235 R -0.382
236 N -0.755
237 P 0.080
238 P 0.064
239 T -0.275
240 S -0.983
241 T -0.742
242 R 0.730
243 M 0.398
244 A -1.166
245 Q 1.198
246 A 0.195
247 R -0.176
248 E 0.340
249 A 0.182
250 M -0.323
251 D -0.302
252 R -0.182
253 V -0.326
254 K -0.274
255 A -0.794
256 P -0.250
257 D -0.269
258 G 0.014
259 E -0.117
260 T -1.074
261 Q -0.413
262 P 0.083
263 M -0.892
264 T -0.241
265 E -0.438
266 V 0.191
267 D 0.780
268 L 0.671
269 F -0.269
270 V 0.327
271 S 1.520
272 T -0.874
273 K 0.047
274 R 0.041
275 I 0.112
276 K -0.558
277 V 0.088
278 L -0.449
279 T -0.398
280 A -0.080
281 D -0.481
282 S -0.437
283 Q -0.555
284 E -0.619
285 A -0.624
286 M -0.411
287 M -0.779
288 D -0.170
289 H -0.676
290 A -0.674
291 L 0.440
292 H -0.423
293 T -1.105
294 I -0.285
295 S 0.841
296 Y -0.710
297 T -0.567
298 A -0.115
299 D 0.101
300 I -0.573
301 G 0.190
302 C -1.037
303 V -0.512
304 L -0.618
305 V 0.231
306 L 0.582
307 M -0.157
308 A 0.078
309 R -0.343
310 R 0.815
311 R -0.881
312 L -1.299
313 A -0.989
314 R -1.141
315 R -1.073
316 P -0.873
317 A -1.014
318 P -0.692
319 Q -1.144
320 D -0.734
321 H -1.124
322 G -0.973
323 R -1.149
324 R -0.893
325 L -0.898
326 Y -0.946
327 K -0.872
328 M -0.073
329 L -0.045
330 C 0.471
331 H 0.360
332 V 0.641
333 F 0.235
334 Y -0.638
335 A 0.195
336 E -0.408
337 D 0.077
338 A -0.110
339 Q -0.353
340 L -0.284
341 I 0.268
342 A 0.595
343 Q -0.381
344 A 0.054
345 I 0.176
346 G 1.826
347 Q 0.900
348 A -0.094
349 F 0.194
350 A -0.422
351 A -0.479
352 A 0.844
353 Y 0.535
354 S -1.211
355 Q 0.091
356 F -0.484
357 L 2.193
358 R -0.548
359 E -0.130
360 S -0.267
361 G 0.817
362 I -0.099
363 D -0.303
364 P -0.191
365 S -1.092
366 Q -0.463
367 V -1.046
368 G -0.775
369 V -0.760
370 H -0.952
371 P -0.259
372 S -1.028
373 P -0.906
374 G -0.722
375 A -0.751
376 C -0.521
377 H -0.825
378 L -0.563
379 H -0.459
380 N -0.537
381 G -0.693
382 D 0.937
383 L 1.006
384 D -1.219
385 H -0.364
386 F 0.364
387 S 0.177
388 N -0.241
389 S 0.003
390 D 0.310
391 N -0.775
392 C -0.877
393 R 0.064
394 E 0.103
395 V 0.699
396 H -1.440
397 L 0.736
398 E -1.004
399 K 1.351
400 R -0.955
401 R -0.447
402 G 0.517
403 E 0.477
404 G -0.558
405 L 1.943
406 G 3.592
407 V 1.084
408 A 0.333
409 L 1.378
410 V 0.982
411 E 0.786
412 S 0.518
413 G 1.500
414 W -0.294
415 G 1.803
416 S 1.123
417 L 0.132
418 L 0.677
419 P 1.254
420 T 0.320
421 A 0.544
422 V 0.682
423 I 1.533
424 A -0.046
425 N -0.096
426 L 1.365
427 L -0.953
428 H -0.537
429 G -0.848
430 G 2.605
431 P 0.713
432 A 2.185
433 E 0.431
434 R 0.687
435 S 0.774
436 G 1.750
437 A -0.209
438 L 2.040
439 S 0.184
440 I 0.243
441 G 3.352
442 D 2.773
443 R 0.970
444 L 2.163
445 T 1.195
446 A -0.125
447 I 1.943
448 N 2.916
449 G 1.161
450 T -0.272
451 S 1.632
452 L 1.343
453 V 1.025
454 G 0.742
455 L 0.234
456 P 1.386
457 L 0.426
458 A -0.826
459 A -0.435
460 C 1.346
461 Q -0.098
462 A -0.202
463 A -0.150
464 V 1.377
465 R 2.401
466 E -0.844
467 T -0.583
468 K -0.724
469 S -0.770
470 Q -0.550
471 T -0.671
472 S -1.290
473 V 0.836
474 T -0.209
475 L 0.668
476 S -0.748
477 I 0.684
478 V -0.286
479 H -0.709
480 C -0.323
481 P -0.436
482 P 0.728
483 V -0.217
484 T -0.804
485 T -0.444
486 A -0.022
487 I -0.309
488 I 0.107
489 H -0.652
490 R -0.197
491 P 0.499
492 H -0.524
493 A -0.445
494 R -0.534
495 E -0.515
496 Q 0.290
497 L 1.087
498 G 2.938
499 F 0.945
500 C 0.883
501 V 0.690
502 E 0.435
503 D 0.698
504 G 1.416
505 I -0.260
506 I 0.632
507 C 0.231
508 S -0.259
509 L 0.905
510 L -0.163
511 R 0.527
512 G 1.072
513 G 1.941
514 I 0.560
515 A 2.386
516 E 1.096
517 R 0.910
518 G 0.342
519 G 1.194
520 I 1.658
521 R 0.387
522 V 0.466
523 G 1.745
524 H 2.328
525 R 0.637
526 I 2.107
527 I 0.388
528 E 0.915
529 I 1.980
530 N 2.215
531 G 1.039
532 Q -0.618
533 S 1.155
534 V 1.192
535 V 0.003
536 A 1.077
537 T -0.082
538 P 0.083
539 H 1.403
540 A 0.070
541 R -0.191
542 I 0.961
543 I 0.839
544 E -0.926
545 L 0.363
546 L 2.281
547 T -0.031
548 E -0.957
549 A 0.663
550 Y -0.909
551 G 0.004
552 E -0.383
553 V 1.762
554 H -0.229
555 I 1.013
556 K 0.838
557 T 0.918
558 M 1.055
559 P 1.220
560 A 0.114
561 A 0.315
562 T 0.772
563 Y 1.748
564 R 0.568
565 L 1.457
566 L 2.133
567 T 1.803
568 G 0.566
569 Q 1.148
570 E 0.928
571 Q -0.648
572 P 4.166
573 V -0.326
574 Y 1.754
575 L 1.315
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 141.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MDFPTISRSP SGPPAMDLEG PRDILVPSED LTPDSQWDPM PGGPGSLSRM ELDESSLQEL
70 80 90 100 110 120
VQQFEALPGD LVGPSPGGAP CPLHIATGHG LASQEIADAH GLLSAEAGRD DLLGLLHCEE
130 140 150 160 170 180
CPPSQTGPEE PLEPAPRLLQ PPEDPDEDSD SPEWVEGASA EQEGSRSSSS SPEPWLETVP
190 200 210 220 230 240
LVTPEEPPAG AQSPETLASY PAPQEVPGPC DHEDLLDGVI FGARYLGSTQ LVSERNPPTS
250 260 270 280 290 300
TRMAQAREAM DRVKAPDGET QPMTEVDLFV STKRIKVLTA DSQEAMMDHA LHTISYTADI
310 320 330 340 350 360
GCVLVLMARR RLARRPAPQD HGRRLYKMLC HVFYAEDAQL IAQAIGQAFA AAYSQFLRES
370 380 390 400 410 420
GIDPSQVGVH PSPGACHLHN GDLDHFSNSD NCREVHLEKR RGEGLGVALV ESGWGSLLPT
430 440 450 460 470 480
AVIANLLHGG PAERSGALSI GDRLTAINGT SLVGLPLAAC QAAVRETKSQ TSVTLSIVHC
490 500 510 520 530 540
PPVTTAIIHR PHAREQLGFC VEDGIICSLL RGGIAERGGI RVGHRIIEIN GQSVVATPHA
550 560 570
RIIELLTEAY GEVHIKTMPA ATYRLLTGQE QPVYL
5UWS (X-ray,2.40 Å resolution)
X11L2 belongs to a family of highly conserved adaptor proteins which provide molecular scaffolds for membrane proteins and membrane-associated proteins. Some scaffolding proteins have been shown to be involved in the nucleus. Sumioka et al. showed that X11L2 can shuttle and can activate transcription. Efficient shuttling is important for the observed transcriptional activity. Crystal structure of NES peptide bound to CRM1 revealed that X11L2 NES is a class 4 NES which uses a beta turn to accommodate the last leucine into the P4 CRM1 hydrophobic pocket.
[1]. "The X11L/X11beta/MINT2 and X11L2/X11gamma/MINT3 scaffold proteins shuttle between the nucleus and cytoplasm."
Sumioka A, Saito Y, Sakuma M, Araki Y, Yamamoto T, Suzuki T (2008)
Exp Cell Res,
314:1155-62
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.