*highlighted yellow in the full sequence
L48A/F50A
*shown as underlined residues in the full sequence
30TDPFLAMQVQELTRSMANLTFKQRRDAPPEGPSAKKPKK
68
Show FASTA Format
>gi|25140294|ref|NP_740700.1| core protein [Venezuelan equine encephalitis virus]
MFPFQPMYPMQPMPYRNPFAAPRRPWFPRTDPFLAMQVQELTRSMANLTFKQRRDAPPEGPPAKKPKREA
PQKQKGGGQGKKKKNQGKKKAKTGPPNPKAQSGNKKKPNKKPGKRQRMVMKLESDKTFPIMLEGKINGYA
CVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADVPQNMRADTFKYTHEKPQGYYSWHHGAVQYE
NGRFTVPKGVGAKGDSGRPILDNQGRVVAIVLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 998999998999999999999999999999936689899999999752011246799999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AA: MFPFQPMYPMQPMPYRNPFAAPRRPWFPRTDPFLAMQVQELTRSMANLTFKQRRDAPPEG
10 20 30 40 50 60
Conf: 999999998987889999998888668667999999999999999999999961121115
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
AA: PPAKKPKREAPQKQKGGGQGKKKKNQGKKKAKTGPPNPKAQSGNKKKPNKKPGKRQRMVM
70 80 90 100 110 120
Conf: 442784132123573555688875863011200231381676532102232233333676
Pred: EECCCCEEEEEECCEEEEEEEEECCEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
AA: KLESDKTFPIMLEGKINGYACVVGGKLFRPMHVEGKIDNDVLAALKTKKASKYDLEYADV
130 140 150 160 170 180
Conf: 834333322233359984101322028852784882236899999899432589848999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCEEEE
AA: PQNMRADTFKYTHEKPQGYYSWHHGAVQYENGRFTVPKGVGAKGDSGRPILDNQGRVVAI
190 200 210 220 230 240
Conf: 96678888500679998636540766358876579
Pred: EECCCCCCCCEEEEEEEECCCCEEEEECCCCCCCC
AA: VLGGVNEGSRTALSVVMWNEKGVTVKYTPENCEQW
250 260 270
Show Conservation Score by AL2CO
1 M -1.000 *
2 F -1.000 *
3 P -1.000 *
4 F -1.000 *
5 Q -1.000 *
6 P -1.000 *
7 M 0.386
8 Y -0.071
9 P -0.020
10 M -0.887
11 Q -0.365
12 P -0.381
13 M -0.706
14 P -0.405
15 Y -1.406
16 R 0.075
17 N -1.287
18 P 1.059
19 F -1.412
20 A -1.068
21 A -1.345
22 P -0.298
23 R -1.393
24 R -0.644
25 P -0.822
26 W -1.269
27 F -0.843
28 P -0.793
29 R -0.327
30 T -1.109
31 D -1.097
32 P -0.668
33 F -1.274
34 L -0.296
35 A -0.299
36 M -1.439
37 Q 0.990
38 V -0.434
39 Q -0.685
40 E -0.442
41 L 1.807
42 T -0.698
43 R -1.115
44 S -0.099
45 M 0.286
46 A -0.885
47 N -0.939
48 L 1.807
49 T 0.236
50 F -0.934
51 K -1.125
52 Q -0.061
53 R -0.636
54 R -1.071
55 D -1.567
56 A -1.111
57 P -0.379
58 P -0.553
59 E -1.261
60 G -0.430
61 P -0.816
62 P -0.324
63 A -1.095
64 K -0.634
65 K -0.841
66 P -0.352
67 K -0.360
68 R -0.626
69 E -1.548
70 A -1.523
71 P -0.611
72 Q -1.240
73 K -1.427
74 Q -1.387
75 K -1.564
76 G -1.254
77 G -1.416
78 G -1.284
79 Q -1.053
80 G -1.422
81 K -1.226
82 K -1.210
83 K -0.878
84 K -1.332
85 N -1.408
86 Q -1.019
87 G -1.558
88 K -0.844
89 K -0.878
90 K -0.419
91 A -1.090
92 K -1.227
93 T -1.384
94 G -1.241
95 P -1.258
96 P -0.662
97 N -0.926
98 P -1.064
99 K -0.671
100 A -0.924
101 Q -0.907
102 S -1.277
103 G -1.251
104 N -1.402
105 K -1.251
106 K -1.231
107 K -0.697
108 P -1.102
109 N -0.051
110 K -0.697
111 K 0.350
112 P 1.807
113 G 1.807
114 K 0.943
115 R 0.383
116 Q -0.393
117 R 1.023
118 M -1.079
119 V -0.418
120 M 0.310
121 K 0.463
122 L -0.430
123 E -0.374
124 S -0.898
125 D -0.032
126 K -0.695
127 T -0.391
128 F 1.023
129 P -0.073
130 I -0.040
131 M -0.928
132 L -0.429
133 E 0.315
134 G 1.023
135 K -0.941
136 I 0.293
137 N -0.937
138 G 1.807
139 Y 0.923
140 A 1.807
141 C 0.276
142 V 0.244
143 V -0.113
144 G 0.829
145 G 0.274
146 K 0.815
147 L 0.874
148 F 0.306
149 R 0.873
150 P 1.807
151 M 0.255
152 H 1.807
153 V 1.807
154 E -0.035
155 G 1.807
156 K -0.428
157 I 0.955
158 D 1.030
159 N 0.834
160 D -0.403
161 V -1.131
162 L 1.807
163 A 0.863
164 A -0.705
165 L 0.306
166 K -0.346
167 T -0.079
168 K 0.264
169 K 0.292
170 A 0.816
171 S 0.293
172 K -0.945
173 Y 0.351
174 D 1.807
175 L 0.818
176 E 1.807
177 Y -0.451
178 A 0.955
179 D -0.490
180 V -0.152
181 P 1.807
182 Q -0.449
183 N -1.235
184 M 1.807
185 R 0.850
186 A 0.861
187 D 0.872
188 T -0.117
189 F -0.111
190 K -1.081
191 Y 0.324
192 T 0.897
193 H -0.454
194 E 0.310
195 K -0.122
196 P 0.897
197 Q -0.445
198 G 0.980
199 Y -0.118
200 Y 1.807
201 S 0.865
202 W 0.955
203 H 0.351
204 H 0.327
205 G 1.807
206 A 0.373
207 V 0.897
208 Q 1.023
209 Y -0.384
210 E -0.448
211 N -0.146
212 G 0.306
213 R 0.373
214 F 0.373
215 T 0.332
216 V -0.098
217 P 0.373
218 K -0.435
219 G 0.955
220 V -0.423
221 G 0.955
222 A -0.440
223 K 0.247
224 G 1.807
225 D 1.807
226 S 1.807
227 G 1.807
228 R 1.807
229 P 1.023
230 I 0.955
231 L -0.139
232 D 1.807
233 N 1.807
234 Q -0.700
235 G 1.807
236 R 0.339
237 V 1.807
238 V 1.807
239 A 0.897
240 I 1.023
241 V 1.807
242 L 1.807
243 G 1.807
244 G 1.807
245 V -0.093
246 N 0.300
247 E 0.352
248 G 0.980
249 S -0.693
250 R 0.980
251 T 1.807
252 A -0.066
253 L 1.807
254 S 1.807
255 V 1.807
256 V 0.828
257 M 0.304
258 W 0.897
259 N -0.090
260 E -0.656
261 K -0.034
262 G -0.417
263 V -0.115
264 T 0.331
265 V -0.427
266 K -0.077
267 Y -0.462
268 T -0.057
269 P 0.330
270 E 0.351
271 N -0.158
272 C -0.156
273 E 0.272
274 Q -0.115
275 W 1.807
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 144.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MFPFQPMYPM QPMPYRNPFA APRRPWFPRT DPFLAMQVQE LTRSMANLTF KQRRDAPPEG
70 80 90 100 110 120
PSAKKPKKEA SQKQKGGGQG KKKKNQGKKK AKTGPPNPKA QNGNKKKTNK KPGKRQRMVM
130 140 150 160 170 180
KLESDKTFPI MLEGKINGYA CVVGGKLFRP MHVEGKIDND VLAALKTKKA SKYDLEYADV
190 200 210 220 230 240
PQNMRADTFK YTHEKPQGYY SWHHGAVQYE NGRFTVPKGV GAKGDSGRPI LDNQGRVVAI
250 260 270
VLGGVNEGSR TALSVVMWNE KGVTVKYTPE NCEQW
Capsid protein is one of the six spliced products of structural protein of VEEV. 30-68 of VEEV capsid protein (H68) inhibits normal cellular import. The author proposed that H68 has a supraNES, that can bind CRM1 even in the absence of RanGTP. The correct spacing between the NES and the NLS enables the formation of a tetrameric complex of H68, CRM1, Impα/β. This complex blocks the NPC which results in the blocking of cellular import. The binding to CRM1 was shown by surface resonance spectroscopy.
[1]. "Venezuelan equine Encephalitis virus capsid protein forms a tetrameric complex with CRM1 and importin alpha/beta that obstructs nuclear pore complex function."
Atasheva S, Fish A, Fornerod M, Frolova EI. (2010)
J Virol,
84:4158-71
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.