CCAAT-binding factor complex subunit Php4
UniProt
Show FASTA Format
>gi|26401417|sp|O14318.2|YB71_SCHPO RecName: Full=Uncharacterized protein C16E9.01c
MESSKSPSEVEKSSSASPAPQKPMIRVSKQWVVPPRPKPGRKPALDALGRRKAPIKPRPGPTSALSVEEA
KFRVREKQYQDTIGKLQKENNELLEQLEMLQAQLKNSTLDSPKEVEVNSEVVKPDSATTENENRYVNQYN
YPVEPPCAKNAVYTEIPIELDPHAFLGDSAKRIRVDSDSKDAKSVPSENGRIRVSMSPQNEINFTPENPA
VMEKIRKRGVCNSVEGCLYSGSPKSVKRVRESEETKVYAQLLIDLHKSSKSAPMLKAGPSIAFKLPTMEP
NFNDVRPVTSISSSS
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 988999731024799999999982485120540899999997322335874466789999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
AA: MESSKSPSEVEKSSSASPAPQKPMIRVSKQWVVPPRPKPGRKPALDALGRRKAPIKPRPG
10 20 30 40 50 60
Conf: 887420100233556788888776665455689999999998753113689862000577
Pred: CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
AA: PTSALSVEEAKFRVREKQYQDTIGKLQKENNELLEQLEMLQAQLKNSTLDSPKEVEVNSE
70 80 90 100 110 120
Conf: 569999642001111000468678998768401212443477300158754179548998
Pred: CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCEECCCCCCEEEECCCCC
AA: VVKPDSATTENENRYVNQYNYPVEPPCAKNAVYTEIPIELDPHAFLGDSAKRIRVDSDSK
130 140 150 160 170 180
Conf: 768777777511440488873224689857889877414423777610038966420010
Pred: CCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHH
AA: DAKSVPSENGRIRVSMSPQNEINFTPENPAVMEKIRKRGVCNSVEGCLYSGSPKSVKRVR
190 200 210 220 230 240
Conf: 0101378999999875137988874589852224896688998743112113699
Pred: CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
AA: ESEETKVYAQLLIDLHKSSKSAPMLKAGPSIAFKLPTMEPNFNDVRPVTSISSSS
250 260 270 280 290
Show Conservation Score by AL2CO
1 M 1.327
2 E -0.102
3 S -0.127
4 S -0.127
5 K -0.127
6 S -0.127
7 P -1.001
8 S -1.001
9 E 1.327
10 V -0.127
11 E -1.001
12 K -1.001
13 S 1.327
14 S 1.327
15 S -0.102
16 A -1.001
17 S -0.127
18 P -1.001
19 A -0.127
20 P -0.127
21 Q -0.127
22 K -1.001
23 P 1.327
24 M -0.987
25 I -0.129
26 R -0.129
27 V -0.048
28 S 1.327
29 K 1.327
30 Q -0.072
31 W -0.072
32 V 1.327
33 V -0.072
34 P 1.327
35 P 1.327
36 R 1.327
37 P 1.327
38 K 1.327
39 P 1.327
40 G 1.327
41 R 1.327
42 K 1.327
43 P 1.327
44 A 1.327
45 L 1.327
46 D -0.129
47 A 1.327
48 L -0.987
49 G 1.327
50 R -0.129
51 R 1.327
52 K 1.327
53 A -1.611
54 P -0.072
55 I 1.327
56 K 1.327
57 P 1.327
58 R -0.048
59 P 1.327
60 G -1.611
61 P -1.611
62 T -1.611
63 S -0.129
64 A -0.129
65 L -0.962
66 S -0.129
67 V -1.611
68 E 1.327
69 E -0.987
70 A -0.129
71 K -0.048
72 F 1.327
73 R -0.987
74 V -0.072
75 R 1.327
76 E 1.327
77 K -0.987
78 Q 1.327
79 Y 1.327
80 Q 1.327
81 D -0.987
82 T -1.611
83 I 1.327
84 G -0.072
85 K -0.962
86 L 1.327
87 Q 1.327
88 K -0.944
89 E -0.947
90 N -0.072
91 N -0.072
92 E -1.611
93 L 1.327
94 L -0.963
95 E 1.327
96 Q -0.072
97 L -0.072
98 E 1.327
99 M -1.611
100 L -0.026
101 Q -0.962
102 A -0.987
103 Q 1.327
104 L -0.026
105 K -1.611
106 N 1.327
107 S -0.987
108 T -0.987
109 L -0.963
110 D -0.987
111 S -1.611
112 P -0.025
113 K -1.001
114 E -0.947
115 V -0.140
116 E -0.025
117 V -0.947
118 N -1.611
119 S 1.327
120 E -0.963
121 V -0.987
122 V -0.962
123 K -0.947
124 P -0.962
125 D -0.942
126 S -0.025
127 A -0.962
128 T -1.611
129 T -1.001
130 E -1.001
131 N -1.000 *
132 E -1.000 *
133 N 1.327
134 R -0.987
135 Y -0.987
136 V -0.987
137 N -0.048
138 Q -0.987
139 Y -0.987
140 N 1.327
141 Y -0.987
142 P 1.327
143 V 1.327
144 E -0.048
145 P 1.327
146 P 1.327
147 C 1.327
148 A -0.987
149 K -0.963
150 N -0.072
151 A -0.072
152 V -0.026
153 Y 1.327
154 T 1.327
155 E 1.327
156 I -0.048
157 P 1.327
158 I 1.327
159 E 1.327
160 L -0.072
161 D -0.072
162 P 1.327
163 H -0.072
164 A -0.048
165 F -0.072
166 L 1.327
167 G 1.327
168 D -0.072
169 S 1.327
170 A -1.001
171 K 1.327
172 R 1.327
173 I -0.987
174 R 1.327
175 V -0.987
176 D -1.001
177 S -0.087
178 D -1.611
179 S -1.611
180 K -0.962
181 D -1.611
182 A -0.947
183 K -0.963
184 S -1.611
185 V -0.072
186 P -0.025
187 S -0.962
188 E -0.129
189 N -0.947
190 G -0.963
191 R -0.025
192 I -0.048
193 R -1.001
194 V -1.001
195 S -1.001
196 M -1.001
197 S 1.327
198 P -1.000 *
199 Q -1.611
200 N -0.072
201 E 1.327
202 I 1.327
203 N -0.072
204 F 1.327
205 T 1.327
206 P -0.072
207 E -0.072
208 N -0.072
209 P -0.072
210 A -0.944
211 V -0.962
212 M -0.987
213 E 1.327
214 K -0.987
215 I -0.072
216 R 1.327
217 K -0.026
218 R -1.611
219 G 1.327
220 V -0.987
221 C 1.327
222 N -0.072
223 S -0.048
224 V -0.963
225 E -0.048
226 G -0.072
227 C 1.327
228 L -0.072
229 Y 1.327
230 S 1.327
231 G -0.048
232 S -0.129
233 P -0.026
234 K -0.987
235 S -0.947
236 V -1.611
237 K -0.072
238 R -0.072
239 V -0.987
240 R -0.072
241 E -0.072
242 S -0.072
243 E -0.048
244 E 1.327
245 T 1.327
246 K 1.327
247 V -0.987
248 Y -0.072
249 A 1.327
250 Q -0.072
251 L -0.072
252 L 1.327
253 I -0.072
254 D -0.072
255 L 1.327
256 H 1.327
257 K -0.048
258 S 1.327
259 S -0.987
260 K -0.987
261 S -0.987
262 A 1.327
263 P 1.327
264 M -0.127
265 L -0.127
266 K -0.944
267 A -0.072
268 G -0.072
269 P -0.072
270 S 1.327
271 I -0.072
272 A -1.611
273 F 1.327
274 K -0.963
275 L -0.987
276 P -0.072
277 T -0.129
278 M -0.987
279 E -0.072
280 P -0.072
281 N -0.087
282 F -1.001
283 N -0.072
284 D -0.942
285 V -0.963
286 R -0.048
287 P -0.072
288 V -0.987
289 T -0.987
290 S 1.327
291 I -1.000 *
292 S -1.000 *
293 S -1.000 *
294 S -1.000 *
295 S -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 148.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MESSKSPSEV EKSSSASPAP QKPMIRVSKQ WVVPPRPKPG RKPALDALGR RKAPIKPRPG
70 80 90 100 110 120
PTSALSVEEA KFRVREKQYQ DTIGKLQKEN NELLEQLEML QAQLKNSTLD SPKEVEVNSE
130 140 150 160 170 180
VVKPDSATTE NENRYVNQYN YPVEPPCAKN AVYTEIPIEL DPHAFLGDSA KRIRVDSDSK
190 200 210 220 230 240
DAKSVPSENG RIRVSMSPQN EINFTPENPA VMEKIRKRGV CNSVEGCLYS GSPKSVKRVR
250 260 270 280 290
ESEETKVYAQ LLIDLHKSSK SAPMLKAGPS IAFKLPTMEP NFNDVRPVTS ISSSS
Php4 is a subunit of the CCAAT-binding protein complex, which also includes Php2,Php3, and Php5. The CCAAT-binding complex is one of the two iron-regulated proteins that control iron homostatis in S. pombe. Mercier et al. showed that Php4 accumulates into the nucleus in response to low levels of iron and relocalizes to the cytoplasm when iron is repleted.
[1]. "Both Php4 function and subcellular localization are regulated by iron via a multistep mechanism involving the glutaredoxin Grx4 and the exportin Crm1."
Mercier A, Labbe S (2009)
J Biol Chem,
284:20249-62
PubMed
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