Summary for BRCA2 (NES ID: 169)
Full Name
Breast cancer type 2 susceptibility protein UniProt
Alternative Names
Fanconi anemia group D1 protein
Organism
Homo sapiens (Human)
Experimental Evidence for CRM1-mediated Export
Mutations That Affect Nuclear Export
*highlighted yellow in the full sequence
L1384A, L1384A/L1387A Ref.1A CRM1-mediated nuclear export signal governs cytoplasmic localization of BRCA2 and is essential for centrosomal localization of BRCA2., Han et al., Oncogene, 2008 Mutations That Affect CRM1 Binding
Unknown
Functional Export Signals
*shown as underlined residues in the full sequence
1383DLSDLTFLEVA1393 Ref.1A CRM1-mediated nuclear export signal governs cytoplasmic localization of BRCA2 and is essential for centrosomal localization of BRCA2., Han et al., Oncogene, 2008 Secondary Structure of Export Signal
Unknown
Other Residues Important for Export
Unknown
Sequence
Show FASTA Format
>gi|14424438|sp|P51587.2|BRCA2_HUMAN RecName: Full=Breast cancer type 2 susceptibility protein; AltName: Full=Fanconi anemia group D1 protein MPIGSKERPTFFEIFKTRCNKADLGPISLNWFEELSSEAPPYNSEPAEESEHKNNNYEPNLFKTPQRKPS YNQLASTPIIFKEQGLTLPLYQSPVKELDKFKLDLGRNVPNSRHKSLRTVKTKMDQADDVSCPLLNSCLS ESPVVLQCTHVTPQRDKSVVCGSLFHTPKFVKGRQTPKHISESLGAEVDPDMSWSSSLATPPTLSSTVLI VRNEEASETVFPHDTTANVKSYFSNHDESLKKNDRFIASVTDSENTNQREAASHGFGKTSGNSFKVNSCK DHIGKSMPNVLEDEVYETVVDTSEEDSFSLCFSKCRTKNLQKVRTSKTRKKIFHEANADECEKSKNQVKE KYSFVSEVEPNDTDPLDSNVAHQKPFESGSDKISKEVVPSLACEWSQLTLSGLNGAQMEKIPLLHISSCD QNISEKDLLDTENKRKKDFLTSENSLPRISSLPKSEKPLNEETVVNKRDEEQHLESHTDCILAVKQAISG TSPVASSFQGIKKSIFRIRESPKETFNASFSGHMTDPNFKKETEASESGLEIHTVCSQKEDSLCPNLIDN GSWPATTTQNSVALKNAGLISTLKKKTNKFIYAIHDETSYKGKKIPKDQKSELINCSAQFEANAFEAPLT FANADSGLLHSSVKRSCSQNDSEEPTLSLTSSFGTILRKCSRNETCSNNTVISQDLDYKEAKCNKEKLQL FITPEADSLSCLQEGQCENDPKSKKVSDIKEEVLAAACHPVQHSKVEYSDTDFQSQKSLLYDHENASTLI LTPTSKDVLSNLVMISRGKESYKMSDKLKGNNYESDVELTKNIPMEKNQDVCALNENYKNVELLPPEKYM RVASPSRKVQFNQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKELH ETDLTCVNEPIFKNSTMVLYGDTGDKQATQVSIKKDLVYVLAEENKNSVKQHIKMTLGQDLKSDISLNID KIPEKNNDYMNKWAGLLGPISNHSFGGSFRTASNKEIKLSEHNIKKSKMFFKDIEEQYPTSLACVEIVNT LALDNQKKLSKPQSINTVSAHLQSSVVVSDCKNSHITPQMLFSKQDFNSNHNLTPSQKAEITELSTILEE SGSQFEFTQFRKPSYILQKSTFEVPENQMTILKTTSEECRDADLHVIMNAPSIGQVDSSKQFEGTVEIKR KFAGLLKNDCNKSASGYLTDENEVGFRGFYSAHGTKLNVSTEALQKAVKLFSDIENISEETSAEVHPISL SSSKCHDSVVSMFKIENHNDKTVSEKNNKCQLILQNNIEMTTGTFVEEITENYKRNTENEDNKYTAASRN SHNLEFDGSDSSKNDTVCIHKDETDLLFTDQHNICLKLSGQFMKEGNTQIKEDLSDLTFLEVAKAQEACH GNTSNKEQLTATKTEQNIKDFETSDTFFQTASGKNISVAKESFNKIVNFFDQKPEELHNFSLNSELHSDI RKNKMDILSYEETDIVKHKILKESVPVGTGNQLVTFQGQPERDEKIKEPTLLGFHTASGKKVKIAKESLD KVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDLELACETIEITAAPKCKEMQNSLNNDKNLVSIETV VPPKLLSDNLCRQTENLKTSKSIFLKVKVHENVEKETAKSPATCYTNQSPYSVIENSALAFYTSCSRKTS VSQTSLLEAKKWLREGIFDGQPERINTADYVGNYLYENNSNSTIAENDKNHLSEKQDTYLSNSSMSNSYS YHSDEVYNDSGYLSKNKLDSGIEPVLKNVEDQKNTSFSKVISNVKDANAYPQTVNEDICVEELVTSSSPC KNKNAAIKLSISNSNNFEVGPPAFRIASGKIVCVSHETIKKVKDIFTDSFSKVIKENNENKSKICQTKIM AGCYEALDDSEDILHNSLDNDECSTHSHKVFADIQSEEILQHNQNMSGLEKVSKISPCDVSLETSDICKC SIGKLHKSVSSANTCGIFSTASGKSVQVSDASLQNARQVFSEIEDSTKQVFSKVLFKSNEHSDQLTREEN TAIRTPEHLISQKGFSYNVVNSSAFSGFSTASGKQVSILESSLHKVKGVLEEFDLIRTEHSLHYSPTSRQ NVSKILPRVDKRNPEHCVNSEMEKTCSKEFKLSNNLNVEGGSSENNHSIKVSPYLSQFQQDKQQLVLGTK VSLVENIHVLGKEQASPKNVKMEIGKTETFSDVPVKTNIEVCSTYSKDSENYFETEAVEIAKAFMEDDEL TDSKLPSHATHSLFTCPENEEMVLSNSRIGKRRGEPLILVGEPSIKRNLLNEFDRIIENQEKSLKASKST PDGTIKDRRLFMHHVSLEPITCVPFRTTKERQEIQNPNFTAPGQEFLSKSHLYEHLTLEKSSSNLAVSGH PFYQVSATRNEKMRHLITTGRPTKVFVPPFKTKSHFHRVEQCVRNINLEENRQKQNIDGHGSDDSKNKIN DNEIHQFNKNNSNQAAAVTFTKCEEEPLDLITSLQNARDIQDMRIKKKQRQRVFPQPGSLYLAKTSTLPR ISLKAAVGGQVPSACSHKQLYTYGVSKHCIKINSKNAESFQFHTEDYFGKESLWTGKGIQLADGGWLIPS NDGKAGKEEFYRALCDTPGVDPKLISRIWVYNHYRWIIWKLAAMECAFPKEFANRCLSPERVLLQLKYRY DTEIDRSRRSAIKKIMERDDTAAKTLVLCVSDIISLSANISETSSNKTSSADTQKVAIIELTDGWYAVKA QLDPPLLAVLKNGRLTVGQKIILHGAELVGSPDACTPLEAPESLMLKISANSTRPARWYTKLGFFPDPRP FPLPLSSLFSDGGNVGCVDVIIQRAYPIQWMEKTSSGLYIFRNEREEEKEAAKYVEAQQKRLEALFTKIQ EEFEEHEENTTKPYLPSRALTRQQVRALQDGAELYEAVKNAADPAYLEGYFSEEQLRALNNHRQMLNDKK QAQIQLEIRKAMESAEQKEQGLSRDVTTVWKLRIVSYSKKEKDSVILSIWRPSSDLYSLLTEGKRYRIYH LATSKSKSKSERANIQLAATKKTQYQQLPVSDEILFQIYQPREPLHFSKFLDPDFQPSCSEVDLIGFVVS VVKKTGLAPFVYLSDECYNLLAIKFWIDLNEDIIKPHMLIAASNLQWRPESKSGLLTLFAGDFSVFSASP KEGHFQETFNKMKNTVENIDILCNEAENKLMHILHANDPKWSTPTKDCTSGPYTAQIIPGTGNKLLMSSP NCEIYYQSPLSLCMAKRKSVSTPVSAQMTSKSCKGEKEIDDQKNCKKRRALDFLSRLPLPPPVSPICTFV SPAAQKAFQPPRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIADEELALINTQALLSGSTGEK QFISVSESTRTAPTSSEDYLRLKRRCTTSLIKEQESSQASTEECEKNKQDTITTKKYIShow Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2) Conf: 999887888157876301375765868988266731279999999822235865577989 Pred: CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC AA: MPIGSKERPTFFEIFKTRCNKADLGPISLNWFEELSSEAPPYNSEPAEESEHKNNNYEPN 10 20 30 40 50 60 Conf: 768889896420013664110126987789889411000112026998778866652201 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHH AA: LFKTPQRKPSYNQLASTPIIFKEQGLTLPLYQSPVKELDKFKLDLGRNVPNSRHKSLRTV 70 80 90 100 110 120 Conf: 112455656557785332257963222344476778853358876674445777898644 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: KTKMDQADDVSCPLLNSCLSESPVVLQCTHVTPQRDKSVVCGSLFHTPKFVKGRQTPKHI 130 140 150 160 170 180 Conf: 212378449999844456899987717999536874445567786126731334663434 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCC AA: SESLGAEVDPDMSWSSSLATPPTLSSTVLIVRNEEASETVFPHDTTANVKSYFSNHDESL 190 200 210 220 230 240 Conf: 447863445455534312322016888666895334576221158699975332212236 Pred: CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: KKNDRFIASVTDSENTNQREAASHGFGKTSGNSFKVNSCKDHIGKSMPNVLEDEVYETVV 250 260 270 280 290 300 Conf: 998788532110135433432223552220100101332223111221012344445799 Pred: CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCC AA: DTSEEDSFSLCFSKCRTKNLQKVRTSKTRKKIFHEANADECEKSKNQVKEKYSFVSEVEP 310 320 330 340 350 360 Conf: 999998888788987778986511233479988777677679885422112357889543 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: NDTDPLDSNVAHQKPFESGSDKISKEVVPSLACEWSQLTLSGLNGAQMEKIPLLHISSCD 370 380 390 400 410 420 Conf: 357530011000012245444678788877999888765533101346643235775432 Pred: CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: QNISEKDLLDTENKRKKDFLTSENSLPRISSLPKSEKPLNEETVVNKRDEEQHLESHTDC 430 440 450 460 470 480 Conf: 311211344787755630123430367026942223332346666888765200124586 Pred: CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: ILAVKQAISGTSPVASSFQGIKKSIFRIRESPKETFNASFSGHMTDPNFKKETEASESGL 490 500 510 520 530 540 Conf: 544422357799998878899967643223422343444321123577206840684222 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC AA: EIHTVCSQKEDSLCPNLIDNGSWPATTTQNSVALKNAGLISTLKKKTNKFIYAIHDETSY 550 560 570 580 590 600 Conf: 456878323345567763333353336610002676886401220026899999942235 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC AA: KGKKIPKDQKSELINCSAQFEANAFEAPLTFANADSGLLHSSVKRSCSQNDSEEPTLSLT 610 620 630 640 650 660 Conf: 643221135689887679830304675045320122336555746787754333556679 Pred: CCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: SSFGTILRKCSRNETCSNNTVISQDLDYKEAKCNKEKLQLFITPEADSLSCLQEGQCEND 670 680 690 700 710 720 Conf: 997556532100010034567555333498400236664567888753212579888698 Pred: CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: PKSKKVSDIKEEVLAAACHPVQHSKVEYSDTDFQSQKSLLYDHENASTLILTPTSKDVLS 730 740 750 760 770 780 Conf: 905740576452433213654565452311165688865212103465677668932511 Pred: CCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCE AA: NLVMISRGKESYKMSDKLKGNNYESDVELTKNIPMEKNQDVCALNENYKNVELLPPEKYM 790 800 810 820 830 840 Conf: 504895321123455427861541210015532007998766568998610232245564 Pred: ECCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCC AA: RVASPSRKVQFNQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNN 850 860 870 880 890 900 Conf: 344785333344688655564468710101488832001112000102002212000001 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHCCC AA: LALGNTKELHETDLTCVNEPIFKNSTMVLYGDTGDKQATQVSIKKDLVYVLAEENKNSVK 910 920 930 940 950 960 Conf: 132113577557555323345799787421245566688876777864223589964541 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC AA: QHIKMTLGQDLKSDISLNIDKIPEKNNDYMNKWAGLLGPISNHSFGGSFRTASNKEIKLS 970 980 990 1000 1010 1020 Conf: 346686546588431016897660687504421000003999887754421321449715 Pred: HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCEEECCEEEEC AA: EHNIKKSKMFFKDIEEQYPTSLACVEIVNTLALDNQKKLSKPQSINTVSAHLQSSVVVSD 1030 1040 1050 1060 1070 1080 Conf: 999877887333334768367899034768978310100159986422235885311237 Pred: CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC AA: CKNSHITPQMLFSKQDFNSNHNLTPSQKAEITELSTILEESGSQFEFTQFRKPSYILQKS 1090 1100 1110 1120 1130 1140 Conf: 878787775334699732357887543579977765786221222222100100204576 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC AA: TFEVPENQMTILKTTSEECRDADLHVIMNAPSIGQVDSSKQFEGTVEIKRKFAGLLKNDC 1150 1160 1170 1180 1190 1200 Conf: 778864468876555454113678522236999999961013233465345454378988 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC AA: NKSASGYLTDENEVGFRGFYSAHGTKLNVSTEALQKAVKLFSDIENISEETSAEVHPISL 1210 1220 1230 1240 1250 1260 Conf: 998866884230100236887766334531120236623444332011122223458666 Pred: CCCCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: SSSKCHDSVVSMFKIENHNDKTVSEKNNKCQLILQNNIEMTTGTFVEEITENYKRNTENE 1270 1280 1290 1300 1310 1320 Conf: 676655555665777667878999844751478987654224544344433234456433 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: DNKYTAASRNSHNLEFDGSDSSKNDTVCIHKDETDLLFTDQHNICLKLSGQFMKEGNTQI 1330 1340 1350 1360 1370 1380 Conf: 335785304577520001347789832468210000134568898760015899810217 Pred: CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECH AA: KEDLSDLTFLEVAKAQEACHGNTSNKEQLTATKTEQNIKDFETSDTFFQTASGKNISVAK 1390 1400 1410 1420 1430 1440 Conf: 879977620145842213576774433235578555566322100000101346766678 Pred: HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: ESFNKIVNFFDQKPEELHNFSLNSELHSDIRKNKMDILSYEETDIVKHKILKESVPVGTG 1450 1460 1470 1480 1490 1500 Conf: 852222488322223578864400024899607438789999863310013988644445 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCC AA: NQLVTFQGQPERDEKIKEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFS 1510 1520 1530 1540 1550 1560 Conf: 421101111112341022101221157621343101225777654433457996765221 Pred: CCCCCCCCCCCCCCCHHHHEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC AA: HQWAKTLKYREACKDLELACETIEITAAPKCKEMQNSLNNDKNLVSIETVVPPKLLSDNL 1570 1580 1590 1600 1610 1620 Conf: 123356555443000011023310000269875235899875345751103124885211 Pred: CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC AA: CRQTENLKTSKSIFLKVKVHENVEKETAKSPATCYTNQSPYSVIENSALAFYTSCSRKTS 1630 1640 1650 1660 1670 1680 Conf: 132239999964101346898433355544587655777886322465687874444445 Pred: CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: VSQTSLLEAKKWLREGIFDGQPERINTADYVGNYLYENNSNSTIAENDKNHLSEKQDTYL 1690 1700 1710 1720 1730 1740 Conf: 789987875444665434645444466677754433445777777554333322237779 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: SNSSMSNSYSYHSDEVYNDSGYLSKNKLDSGIEPVLKNVEDQKNTSFSKVISNVKDANAY 1750 1760 1770 1780 1790 1800 Conf: 777541000122357998675622221011246888756999146228957998236699 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCEEEECHHHHH AA: PQTVNEDICVEELVTSSSPCKNKNAAIKLSISNSNNFEVGPPAFRIASGKIVCVSHETIK 1810 1820 1830 1840 1850 1860 Conf: 999871135542112224457877642010344322488654458898978764334554 Pred: HHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: KVKDIFTDSFSKVIKENNENKSKICQTKIMAGCYEALDDSEDILHNSLDNDECSTHSHKV 1870 1880 1890 1900 1910 1920 Conf: 456622575711367654443347898656644544322444664554478886675104 Pred: CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: FADIQSEEILQHNQNMSGLEKVSKISPCDVSLETSDICKCSIGKLHKSVSSANTCGIFST 1930 1940 1950 1960 1970 1980 Conf: 799826719999999999885210353333201123457566332212333434776324 Pred: CCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: ASGKSVQVSDASLQNARQVFSEIEDSTKQVFSKVLFKSNEHSDQLTREENTAIRTPEHLI 1990 2000 2010 2020 2030 2040 Conf: 657877664468899974478999156628799999996853101235554445888757 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC AA: SQKGFSYNVVNSSAFSGFSTASGKQVSILESSLHKVKGVLEEFDLIRTEHSLHYSPTSRQ 2050 2060 2070 2080 2090 2100 Conf: 644335755568985323452100122333345676656686788776333788400011 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: NVSKILPRVDKRNPEHCVNSEMEKTCSKEFKLSNNLNVEGGSSENNHSIKVSPYLSQFQQ 2110 2120 2130 2140 2150 2160 Conf: 222201333110110111246655677542333565444457987765322455532213 Pred: CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH AA: DKQQLVLGTKVSLVENIHVLGKEQASPKNVKMEIGKTETFSDVPVKTNIEVCSTYSKDSE 2170 2180 2190 2200 2210 2220 Conf: 457666899997512689889999999778666778870110024344675447875455 Pred: HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC AA: NYFETEAVEIAKAFMEDDELTDSKLPSHATHSLFTCPENEEMVLSNSRIGKRRGEPLILV 2230 2240 2250 2260 2270 2280 Conf: 999701331145543201333332233458874212333433443234334598877434 Pred: CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: GEPSIKRNLLNEFDRIIENQEKSLKASKSTPDGTIKDRRLFMHHVSLEPITCVPFRTTKE 2290 2300 2310 2320 2330 2340 Conf: 332238987889864347563333443456788888778995445555222233443578 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: RQEIQNPNFTAPGQEFLSKSHLYEHLTLEKSSSNLAVSGHPFYQVSATRNEKMRHLITTG 2350 2360 2370 2380 2390 2400 Conf: 866543388776877654310002453000012356689998898875576423334668 Pred: CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: RPTKVFVPPFKTKSHFHRVEQCVRNINLEENRQKQNIDGHGSDDSKNKINDNEIHQFNKN 2410 2420 2430 2440 2450 2460 Conf: 873112100357778842455688988877778762023553345774414402489997 Pred: CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC AA: NSNQAAAVTFTKCEEEPLDLITSLQNARDIQDMRIKKKQRQRVFPQPGSLYLAKTSTLPR 2470 2480 2490 2500 2510 2520 Conf: 517643049999978965677179772220112234553374036876855334587700 Pred: CHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC AA: ISLKAAVGGQVPSACSHKQLYTYGVSKHCIKINSKNAESFQFHTEDYFGKESLWTGKGIQ 2530 2540 2550 2560 2570 2580 Conf: 379954304999876589999998619999988779989999999999988476522871 Pred: CCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC AA: LADGGWLIPSNDGKAGKEEFYRALCDTPGVDPKLISRIWVYNHYRWIIWKLAAMECAFPK 2590 2600 2610 2620 2630 2640 Conf: 201768898999999999999830235434989987128743452889998742288786 Pred: CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC AA: EFANRCLSPERVLLQLKYRYDTEIDRSRRSAIKKIMERDDTAAKTLVLCVSDIISLSANI 2650 2660 2670 2680 2690 2700 Conf: 668778888757664209999400168742119989999990997744179996030028 Pred: CCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCC AA: SETSSNKTSSADTQKVAIIELTDGWYAVKAQLDPPLLAVLKNGRLTVGQKIILHGAELVG 2710 2720 2730 2740 2750 2760 Conf: 999789877898227999721200265569867778999854235742369976724999 Pred: CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE AA: SPDACTPLEAPESLMLKISANSTRPARWYTKLGFFPDPRPFPLPLSSLFSDGGNVGCVDV 2770 2780 2790 2800 2810 2820 Conf: 999872442566527986212697899999999999999999999999999998731026 Pred: EEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AA: IIQRAYPIQWMEKTSSGLYIFRNEREEEKEAAKYVEAQQKRLEALFTKIQEEFEEHEENT 2830 2840 2850 2860 2870 2880 Conf: 999887753227764017767999999970899455630279999999999999855999 Pred: CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH AA: TKPYLPSRALTRQQVRALQDGAELYEAVKNAADPAYLEGYFSEEQLRALNNHRQMLNDKK 2890 2900 2910 2920 2930 2940 Conf: 999999999999998853049986722999999973347888589999973891446675 Pred: HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCHHHHHHH AA: QAQIQLEIRKAMESAEQKEQGLSRDVTTVWKLRIVSYSKKEKDSVILSIWRPSSDLYSLL 2950 2960 2970 2980 2990 3000 Conf: 069599999765358888786520899304674325445773422037988642013777 Pred: CCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCCCCC AA: TEGKRYRIYHLATSKSKSKSERANIQLAATKKTQYQQLPVSDEILFQIYQPREPLHFSKF 3010 3020 3030 3040 3050 3060 Conf: 799888898864289999999238885318999848733899998035774655778699 Pred: CCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCEE AA: LDPDFQPSCSEVDLIGFVVSVVKKTGLAPFVYLSDECYNLLAIKFWIDLNEDIIKPHMLI 3070 3080 3090 3100 3110 3120 Conf: 994131226887784069921303583399732589999999999884999999999999 Pred: EEECCEECCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AA: AASNLQWRPESKSGLLTLFAGDFSVFSASPKEGHFQETFNKMKNTVENIDILCNEAENKL 3130 3140 3150 3160 3170 3180 Conf: 988103999987898778999998763469998644578876654569852012588664 Pred: HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AA: MHILHANDPKWSTPTKDCTSGPYTAQIIPGTGNKLLMSSPNCEIYYQSPLSLCMAKRKSV 3190 3200 3210 3220 3230 3240 Conf: 333443335765689876787034566744542215999999884211239443301799 Pred: CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCC AA: STPVSAQMTSKSCKGEKEIDDQKNCKKRRALDFLSRLPLPPPVSPICTFVSPAAQKAFQP 3250 3260 3270 3280 3290 3300 Conf: 975798765766645789998884332334687668876511211001010024998887 Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC AA: PRSCGTKYETPIKKKELNSPQMTPFKKFNEISLLESNSIADEELALINTQALLSGSTGEK 3310 3320 3330 3340 3350 3360 Conf: 4345688878889996111002488874026542045212588641145301120379 Pred: CCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHCCCCCHHHCCCC AA: QFISVSESTRTAPTSSEDYLRLKRRCTTSLIKEQESSQASTEECEKNKQDTITTKKYI 3370 3380 3390 3400 3410Show Conservation Score by AL2CO
1 M 2.795 2 P 0.513 3 I -0.633 4 G 0.499 5 S -0.154 6 K 0.559 7 E 0.280 8 R 1.974 9 P 1.102 10 T 0.944 11 F 2.031 12 F 1.477 13 E 1.991 14 I 1.411 15 F 2.795 16 K 0.997 17 T 0.498 18 R 1.207 19 C 2.795 20 N 0.667 21 K -0.236 22 A 1.229 23 D 2.795 24 L 2.134 25 G 2.795 26 P 2.795 27 I 1.803 28 S 2.795 29 L 2.136 30 N 1.557 31 W 2.795 32 F 2.795 33 E 1.612 34 E 2.795 35 L 2.795 36 S 1.063 37 S 0.778 38 E 2.795 39 A 2.795 40 P 0.779 41 P 1.468 42 Y 0.691 43 N 0.281 44 S 0.223 45 E 0.971 46 P -0.585 47 A -0.190 48 E 1.392 49 E 0.964 50 S -0.225 51 E 1.161 52 H 0.490 53 K 0.854 54 N -0.490 55 N -0.659 56 N -0.214 57 Y -0.433 58 E 1.332 59 P 0.298 60 N 0.368 61 L -0.470 62 F 1.568 63 K 2.795 64 T 2.795 65 P 2.795 66 Q 1.212 67 R 0.525 68 K 1.569 69 P 0.658 70 S 0.097 71 Y 1.421 72 N 0.211 73 Q 1.046 74 L 1.569 75 A 1.952 76 S 2.795 77 T 2.795 78 P 2.795 79 I 0.696 80 I 0.734 81 F 2.795 82 K 1.033 83 E 1.342 84 Q 1.282 85 G 0.721 86 L -0.688 87 T 0.276 88 L 0.158 89 P -0.115 90 L 0.136 91 Y -0.104 92 Q 0.051 93 S 2.136 94 P 1.616 95 V -0.338 96 K 0.514 97 E 1.374 98 L 0.324 99 D -0.176 100 K -0.219 101 F -0.486 102 K 0.450 103 L -0.432 104 D -0.482 105 L -0.119 106 G 0.589 107 R 0.128 108 N -0.339 109 V -0.801 110 P -0.344 111 N 0.286 112 S -0.229 113 R -0.205 114 H -0.076 115 K -0.219 116 S 0.623 117 L -0.133 118 R -0.431 119 T -0.857 120 V -0.496 121 K 0.851 122 T 0.211 123 K 0.959 124 M -0.143 125 D 0.059 126 Q 0.638 127 A 0.129 128 D -0.721 129 D 0.617 130 V 0.492 131 S -0.263 132 C 0.419 133 P 0.956 134 L 0.618 135 L 0.209 136 N -0.245 137 S 0.128 138 C 0.316 139 L 1.002 140 S 0.509 141 E 0.013 142 S 2.135 143 P 1.990 144 V -0.314 145 V -0.208 146 L 1.035 147 Q 0.987 148 C -0.666 149 T -0.172 150 H -0.306 151 V -0.368 152 T 1.496 153 P 2.139 154 Q 1.618 155 R 1.408 156 D -0.213 157 K 0.874 158 S 1.312 159 V 0.941 160 V -0.467 161 C 0.546 162 G 2.795 163 S 0.969 164 L 2.140 165 F 1.617 166 H 0.408 167 T 1.954 168 P 2.795 169 K 1.476 170 F 1.304 171 V -0.501 172 K 1.712 173 G 0.545 174 R -1.000 * 175 Q 1.030 176 T 2.795 177 P 0.728 178 K 1.083 179 H 0.668 180 I 2.795 181 S 1.619 182 E 2.795 183 S 2.027 184 L 2.795 185 G 2.795 186 A 1.858 187 E 2.795 188 V 1.621 189 D 2.795 190 P 1.888 191 D 1.920 192 M 2.795 193 S 2.795 194 W 2.795 195 S 1.839 196 S 2.795 197 S 2.795 198 L 2.795 199 A 2.795 200 T 2.795 201 P 2.795 202 P 2.795 203 T 2.139 204 L 2.139 205 S 0.975 206 S 0.888 207 T 2.795 208 V 1.613 209 L 1.730 210 I 1.789 211 V 0.966 212 R 1.373 213 N 0.286 214 E 0.452 215 E 0.832 216 A -0.251 217 S -0.205 218 E -0.047 219 T -0.517 220 V -0.175 221 F -0.201 222 P 0.565 223 H -0.536 224 D 0.981 225 T -0.082 226 T -0.173 227 A -0.154 228 N -0.522 229 V 0.035 230 K 0.218 231 S -0.446 232 Y -0.255 233 F 0.930 234 S 0.138 235 N 0.029 236 H -0.122 237 D 0.510 238 E 0.295 239 S -0.227 240 L 0.357 241 K -0.634 242 K -0.143 243 N 0.632 244 D -0.321 245 R -0.938 246 F -0.601 247 I -0.124 248 A -0.014 249 S 1.097 250 V 0.287 251 T -0.034 252 D 0.030 253 S 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333 F -0.000 334 H -0.456 335 E 0.265 336 A -0.519 337 N -0.554 338 A -0.268 339 D -0.147 340 E -0.574 341 C -0.105 342 E -0.290 343 K 0.526 344 S -0.456 345 K -0.293 346 N -0.994 347 Q -0.896 348 V -0.819 349 K -0.667 350 E -0.631 351 K 0.268 352 Y -1.076 353 S 0.242 354 F -0.427 355 V -0.609 356 S -0.797 357 E 0.110 358 V -0.108 359 E -0.020 360 P -0.284 361 N -0.571 362 D -0.672 363 T -0.198 364 D -0.722 365 P -0.524 366 L 0.011 367 D -0.600 368 S -0.459 369 N -0.295 370 V -0.057 371 A -1.016 372 H -0.785 373 Q -0.154 374 K 0.262 375 P -0.411 376 F -0.772 377 E -0.387 378 S -0.079 379 G -0.721 380 S 0.597 381 D -0.194 382 K -0.425 383 I -0.686 384 S -0.262 385 K -0.004 386 E 0.625 387 V -0.926 388 V 0.014 389 P -0.202 390 S 0.655 391 L 0.393 392 A -0.158 393 C 0.035 394 E -0.125 395 W 0.685 396 S 1.205 397 Q 0.677 398 L 1.127 399 T -0.026 400 L 0.695 401 S 2.145 402 G 0.309 403 L 0.837 404 N 0.275 405 G -0.049 406 A 0.164 407 Q 0.325 408 M -0.265 409 E 0.114 410 K 0.564 411 I -0.046 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-0.412 3159 F -0.279 3160 N -0.511 3161 K -0.098 3162 M 0.383 3163 K 1.355 3164 N -0.530 3165 T -0.314 3166 V 0.638 3167 E 0.900 3168 N -0.060 3169 I -1.092 3170 D -0.825 3171 I -1.250 3172 L 1.094 3173 C -0.011 3174 N -0.798 3175 E -0.478 3176 A 0.853 3177 E 0.301 3178 N -0.802 3179 K 1.268 3180 L 1.346 3181 M -0.452 3182 H -0.848 3183 I 0.223 3184 L 0.647 3185 H -0.940 3186 A -0.670 3187 N -0.306 3188 D -1.193 3189 P -0.238 3190 K -0.569 3191 W -1.010 3192 S -0.482 3193 T -0.349 3194 P -0.112 3195 T -0.536 3196 K 0.043 3197 D -0.783 3198 C -0.716 3199 T -0.871 3200 S -0.474 3201 G -0.683 3202 P -0.367 3203 Y -1.128 3204 T -0.164 3205 A -0.687 3206 Q -0.565 3207 I -0.751 3208 I -1.332 3209 P -0.382 3210 G -0.784 3211 T -0.606 3212 G -0.603 3213 N -0.664 3214 K -1.092 3215 L -0.968 3216 L -1.191 3217 M -0.420 3218 S -0.667 3219 S -0.580 3220 P -0.276 3221 N -0.873 3222 C -1.118 3223 E -0.483 3224 I -0.398 3225 Y -0.641 3226 Y -0.092 3227 Q -0.131 3228 S -0.102 3229 P 0.169 3230 L -0.311 3231 S -0.358 3232 L -0.911 3233 C -0.657 3234 M -0.983 3235 A -0.873 3236 K -0.622 3237 R -0.729 3238 K -0.295 3239 S -0.177 3240 V -0.797 3241 S -0.739 3242 T -0.181 3243 P 0.109 3244 V -0.903 3245 S -0.330 3246 A -0.373 3247 Q -0.675 3248 M -0.692 3249 T -0.118 3250 S -0.560 3251 K -0.523 3252 S -0.557 3253 C -0.142 3254 K -1.095 3255 G -0.988 3256 E -0.666 3257 K -1.006 3258 E -0.737 3259 I -1.020 3260 D -0.031 3261 D -0.122 3262 Q 0.426 3263 K 1.445 3264 N 0.076 3265 C -0.352 3266 K 0.911 3267 K 1.346 3268 R 1.004 3269 R 1.333 3270 A 0.983 3271 L 0.425 3272 D 1.189 3273 F 1.097 3274 L 2.142 3275 S 0.993 3276 R 0.870 3277 L 1.072 3278 P 2.795 3279 L 0.397 3280 P 2.795 3281 P 2.143 3282 P 0.751 3283 V 0.840 3284 S 0.618 3285 P 2.063 3286 I 0.411 3287 C -0.036 3288 T 0.341 3289 F -0.031 3290 V 0.883 3291 S 1.465 3292 P 0.706 3293 A 0.544 3294 A 0.693 3295 Q 1.158 3296 K 1.456 3297 A 1.400 3298 F 2.143 3299 Q 0.554 3300 P 1.627 3301 P 2.795 3302 R 2.143 3303 S 0.066 3304 C 0.317 3305 G -0.202 3306 T -0.831 3307 K -0.163 3308 Y -0.904 3309 E -0.698 3310 T -0.385 3311 P -0.345 3312 I -0.953 3313 K -0.207 3314 K -0.819 3315 K -0.653 3316 E -0.763 3317 L -1.009 3318 N -1.015 3319 S -0.781 3320 P -0.508 3321 Q -1.163 3322 M -1.070 3323 T -0.574 3324 P -0.193 3325 F -0.777 3326 K -0.400 3327 K -0.679 3328 F -1.142 3329 N -0.345 3330 E -0.319 3331 I -0.352 3332 S -0.870 3333 L -0.261 3334 L -0.226 3335 E 0.718 3336 S -1.094 3337 N 0.571 3338 S 0.438 3339 I 1.708 3340 A 0.588 3341 D 2.795 3342 E 2.795 3343 E 2.795 3344 L 2.142 3345 A 2.147 3346 L 0.659 3347 I 1.851 3348 N 1.286 3349 T 2.795 3350 Q 2.144 3351 A 0.354 3352 L 1.485 3353 L -0.640 3354 S -0.658 3355 G -0.385 3356 S 0.234 3357 T -0.396 3358 G 0.021 3359 E 0.247 3360 K -0.046 3361 Q -0.506 3362 F -0.664 3363 I -1.159 3364 S -0.445 3365 V -0.532 3366 S -0.463 3367 E -0.196 3368 S -0.615 3369 T -0.247 3370 R -0.471 3371 T 0.288 3372 A -0.585 3373 P -0.086 3374 T -0.512 3375 S -1.353 3376 S -0.561 3377 E -0.492 3378 D -0.226 3379 Y -1.222 3380 L -0.219 3381 R -0.295 3382 L -0.573 3383 K -0.266 3384 R -0.271 3385 R -0.584 3386 C -0.454 3387 T -0.786 3388 T -0.829 3389 S -0.006 3390 L -0.514 3391 I -1.138 3392 K -0.461 3393 E -0.321 3394 Q -0.557 3395 E -0.656 3396 S -0.645 3397 S 0.202 3398 Q -0.474 3399 A -0.554 3400 S -0.446 3401 T -0.195 3402 E -0.203 3403 E -0.295 3404 C -1.005 3405 E -0.182 3406 K -0.301 3407 N -0.823 3408 K -0.920 3409 Q 0.781 3410 D 1.108 3411 T 0.220 3412 I -0.430 3413 T -0.725 3414 T -0.645 3415 K 0.469 3416 K -1.000 * 3417 Y -1.000 * 3418 I -1.000 * * gap fraction no less than 0.50; conservation set to M-S M: mean; S: standard deviation al2co - The parameters are: Input alignment file - 169.paln Output conservation - STDOUT Weighting scheme - independent-count based Conservation calculation method - entropy-based Window size - 1 Conservation normalized to zero mean and unity variance Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60MPIGSKERPT FFEIFKTRCN KADLGPISLN WFEELSSEAP PYNSEPAEES EHKNNNYEPN70 80 90 100 110 120LFKTPQRKPS YNQLASTPII FKEQGLTLPL YQSPVKELDK FKLDLGRNVP NSRHKSLRTV130 140 150 160 170 180KTKMDQADDV SCPLLNSCLS ESPVVLQCTH VTPQRDKSVV CGSLFHTPKF VKGRQTPKHI190 200 210 220 230 240SESLGAEVDP DMSWSSSLAT PPTLSSTVLI VRNEEASETV FPHDTTANVK SYFSNHDESL250 260 270 280 290 300KKNDRFIASV TDSENTNQRE AASHGFGKTS GNSFKVNSCK DHIGKSMPNV LEDEVYETVV310 320 330 340 350 360DTSEEDSFSL CFSKCRTKNL QKVRTSKTRK KIFHEANADE CEKSKNQVKE KYSFVSEVEP370 380 390 400 410 420NDTDPLDSNV AHQKPFESGS DKISKEVVPS LACEWSQLTL SGLNGAQMEK IPLLHISSCD430 440 450 460 470 480QNISEKDLLD TENKRKKDFL TSENSLPRIS SLPKSEKPLN EETVVNKRDE EQHLESHTDC490 500 510 520 530 540ILAVKQAISG TSPVASSFQG IKKSIFRIRE SPKETFNASF SGHMTDPNFK KETEASESGL550 560 570 580 590 600EIHTVCSQKE DSLCPNLIDN GSWPATTTQN SVALKNAGLI STLKKKTNKF IYAIHDETSY610 620 630 640 650 660KGKKIPKDQK SELINCSAQF EANAFEAPLT FANADSGLLH SSVKRSCSQN DSEEPTLSLT670 680 690 700 710 720SSFGTILRKC SRNETCSNNT VISQDLDYKE AKCNKEKLQL FITPEADSLS CLQEGQCEND730 740 750 760 770 780PKSKKVSDIK EEVLAAACHP VQHSKVEYSD TDFQSQKSLL YDHENASTLI LTPTSKDVLS790 800 810 820 830 840NLVMISRGKE SYKMSDKLKG NNYESDVELT KNIPMEKNQD VCALNENYKN VELLPPEKYM850 860 870 880 890 900RVASPSRKVQ FNQNTNLRVI QKNQEETTSI SKITVNPDSE ELFSDNENNF VFQVANERNN910 920 930 940 950 960LALGNTKELH ETDLTCVNEP IFKNSTMVLY GDTGDKQATQ VSIKKDLVYV LAEENKNSVK970 980 990 1000 1010 1020QHIKMTLGQD LKSDISLNID KIPEKNNDYM NKWAGLLGPI SNHSFGGSFR TASNKEIKLS1030 1040 1050 1060 1070 1080EHNIKKSKMF FKDIEEQYPT SLACVEIVNT LALDNQKKLS KPQSINTVSA HLQSSVVVSD1090 1100 1110 1120 1130 1140CKNSHITPQM LFSKQDFNSN HNLTPSQKAE ITELSTILEE SGSQFEFTQF RKPSYILQKS1150 1160 1170 1180 1190 1200TFEVPENQMT ILKTTSEECR DADLHVIMNA PSIGQVDSSK QFEGTVEIKR KFAGLLKNDC1210 1220 1230 1240 1250 1260NKSASGYLTD ENEVGFRGFY SAHGTKLNVS TEALQKAVKL FSDIENISEE TSAEVHPISL1270 1280 1290 1300 1310 1320SSSKCHDSVV SMFKIENHND KTVSEKNNKC QLILQNNIEM TTGTFVEEIT ENYKRNTENE1330 1340 1350 1360 1370 1380DNKYTAASRN SHNLEFDGSD SSKNDTVCIH KDETDLLFTD QHNICLKLSG QFMKEGNTQI1390 1400 1410 1420 1430 1440KEDLSDLTFL EVAKAQEACH GNTSNKEQLT ATKTEQNIKD FETSDTFFQT ASGKNISVAK1450 1460 1470 1480 1490 1500ESFNKIVNFF DQKPEELHNF SLNSELHSDI RKNKMDILSY EETDIVKHKI LKESVPVGTG1510 1520 1530 1540 1550 1560NQLVTFQGQP ERDEKIKEPT LLGFHTASGK KVKIAKESLD KVKNLFDEKE QGTSEITSFS1570 1580 1590 1600 1610 1620HQWAKTLKYR EACKDLELAC ETIEITAAPK CKEMQNSLNN DKNLVSIETV VPPKLLSDNL1630 1640 1650 1660 1670 1680CRQTENLKTS KSIFLKVKVH ENVEKETAKS PATCYTNQSP YSVIENSALA FYTSCSRKTS1690 1700 1710 1720 1730 1740VSQTSLLEAK KWLREGIFDG QPERINTADY VGNYLYENNS NSTIAENDKN HLSEKQDTYL1750 1760 1770 1780 1790 1800SNSSMSNSYS YHSDEVYNDS GYLSKNKLDS GIEPVLKNVE DQKNTSFSKV ISNVKDANAY1810 1820 1830 1840 1850 1860PQTVNEDICV EELVTSSSPC KNKNAAIKLS ISNSNNFEVG PPAFRIASGK IVCVSHETIK1870 1880 1890 1900 1910 1920KVKDIFTDSF SKVIKENNEN KSKICQTKIM AGCYEALDDS EDILHNSLDN DECSTHSHKV1930 1940 1950 1960 1970 1980FADIQSEEIL QHNQNMSGLE KVSKISPCDV SLETSDICKC SIGKLHKSVS SANTCGIFST1990 2000 2010 2020 2030 2040ASGKSVQVSD ASLQNARQVF SEIEDSTKQV FSKVLFKSNE HSDQLTREEN TAIRTPEHLI2050 2060 2070 2080 2090 2100SQKGFSYNVV NSSAFSGFST ASGKQVSILE SSLHKVKGVL EEFDLIRTEH SLHYSPTSRQ2110 2120 2130 2140 2150 2160NVSKILPRVD KRNPEHCVNS EMEKTCSKEF KLSNNLNVEG GSSENNHSIK VSPYLSQFQQ2170 2180 2190 2200 2210 2220DKQQLVLGTK VSLVENIHVL GKEQASPKNV KMEIGKTETF SDVPVKTNIE VCSTYSKDSE2230 2240 2250 2260 2270 2280NYFETEAVEI AKAFMEDDEL TDSKLPSHAT HSLFTCPENE EMVLSNSRIG KRRGEPLILV2290 2300 2310 2320 2330 2340GEPSIKRNLL NEFDRIIENQ EKSLKASKST PDGTIKDRRL FMHHVSLEPI TCVPFRTTKE2350 2360 2370 2380 2390 2400RQEIQNPNFT APGQEFLSKS HLYEHLTLEK SSSNLAVSGH PFYQVSATRN EKMRHLITTG2410 2420 2430 2440 2450 2460RPTKVFVPPF KTKSHFHRVE QCVRNINLEE NRQKQNIDGH GSDDSKNKIN DNEIHQFNKN2470 2480 2490 2500 2510 2520NSNQAAAVTF TKCEEEPLDL ITSLQNARDI QDMRIKKKQR QRVFPQPGSL YLAKTSTLPR2530 2540 2550 2560 2570 2580ISLKAAVGGQ VPSACSHKQL YTYGVSKHCI KINSKNAESF QFHTEDYFGK ESLWTGKGIQ2590 2600 2610 2620 2630 2640LADGGWLIPS NDGKAGKEEF YRALCDTPGV DPKLISRIWV YNHYRWIIWK LAAMECAFPK2650 2660 2670 2680 2690 2700EFANRCLSPE RVLLQLKYRY DTEIDRSRRS AIKKIMERDD TAAKTLVLCV SDIISLSANI2710 2720 2730 2740 2750 2760SETSSNKTSS ADTQKVAIIE LTDGWYAVKA QLDPPLLAVL KNGRLTVGQK IILHGAELVG2770 2780 2790 2800 2810 2820SPDACTPLEA PESLMLKISA NSTRPARWYT KLGFFPDPRP FPLPLSSLFS DGGNVGCVDV2830 2840 2850 2860 2870 2880IIQRAYPIQW MEKTSSGLYI FRNEREEEKE AAKYVEAQQK RLEALFTKIQ EEFEEHEENT2890 2900 2910 2920 2930 2940TKPYLPSRAL TRQQVRALQD GAELYEAVKN AADPAYLEGY FSEEQLRALN NHRQMLNDKK2950 2960 2970 2980 2990 3000QAQIQLEIRK AMESAEQKEQ GLSRDVTTVW KLRIVSYSKK EKDSVILSIW RPSSDLYSLL3010 3020 3030 3040 3050 3060TEGKRYRIYH LATSKSKSKS ERANIQLAAT KKTQYQQLPV SDEILFQIYQ PREPLHFSKF3070 3080 3090 3100 3110 3120LDPDFQPSCS EVDLIGFVVS VVKKTGLAPF VYLSDECYNL LAIKFWIDLN EDIIKPHMLI3130 3140 3150 3160 3170 3180AASNLQWRPE SKSGLLTLFA GDFSVFSASP KEGHFQETFN KMKNTVENID ILCNEAENKL3190 3200 3210 3220 3230 3240MHILHANDPK WSTPTKDCTS GPYTAQIIPG TGNKLLMSSP NCEIYYQSPL SLCMAKRKSV3250 3260 3270 3280 3290 3300STPVSAQMTS KSCKGEKEID DQKNCKKRRA LDFLSRLPLP PPVSPICTFV SPAAQKAFQP3310 3320 3330 3340 3350 3360PRSCGTKYET PIKKKELNSP QMTPFKKFNE ISLLESNSIA DEELALINTQ ALLSGSTGEK3370 3380 3390 3400 3410QFISVSESTR TAPTSSEDYL RLKRRCTTSL IKEQESSQAS TEECEKNKQD TITTKKYI
3D Structures in PDB
Not Available
Comments
Breast cancer susceptibility gene BRCA2 plays a key role in breast and ovarian cancer predisposition. Although it predominantly localizes in the nucleas and plays significant roles in DNA double-strand break repair, it has been known be involved in nucleo-cytoplasmic shuttling. In specific, BRCA2 contains a centrosomal localization signal and is found in the centrosomes during the S and early M phases of the cell cycle. The BRCA2 NES contributes to its centrosomal localization since the protein exists first in the nucleus before translocation. Results suggest that disruption of the NES function by genetic changes results in deregulation of BRCA2 export, which ultimately leads to centrosome disorder.
References
[1]. "A CRM1-mediated nuclear export signal governs cytoplasmic localization of BRCA2 and is essential for centrosomal localization of BRCA2."
Han X, Saito H, Miki Y, Nakanishi A. (2008) Oncogene, 27:2969-77 PubMed
Han X, Saito H, Miki Y, Nakanishi A. (2008) Oncogene, 27:2969-77 PubMed
User Input
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
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