NESdb

E4 34-kDa protein (Human Adenovirus C) UniProt

None

Human Adenovirus C

Inhibit or inhibited by other CRM1 cargos ^{Ref.1Nuclear export of the E1B 55-kDa and E4 34-kDa adenoviral oncoproteins mediated by a rev-like signal sequence, Dobbelstein et al., EMBO J, 1997}

*highlighted yellow in the full sequence

L90A/I92A ^{Ref.1Nuclear export of the E1B 55-kDa and E4 34-kDa adenoviral oncoproteins mediated by a rev-like signal sequence, Dobbelstein et al., EMBO J, 1997}

Unknown

*shown as underlined residues in the full sequence

⁸³MVLTREELVI⁹² ^{Ref.1Nuclear export of the E1B 55-kDa and E4 34-kDa adenoviral oncoproteins mediated by a rev-like signal sequence, Dobbelstein et al., EMBO J, 1997}

Unknown

Show FASTA Format

>gi|75549231|sp|Q6VGT3|Q6VGT3_9ADEN E4 orf 6
MTTSGVPFGMTLRPTRSRLSRRTPYSRDRLPPFETETRATILEDHPLLPECNTLTMHNVSYVRGLPCSVG
FTLIQEWVVPWDMVLTREELVILRKCMHVCLCCANIDIMTSMMIHGYESWALHCHCSSPGSLQCIAGGQV
LASWFRMVVDGAMFNQRFIWYREVVNYNMPKEVMFMSSVFMRGRHLIYLRLWYDGHVGSVVPAMSFGYSA
LHCGILNNIVVLCCSYCADLSEIRVRCCARRTRRLMLRAVRIIAEETTAMLYSCRTERRRQQFIRALLQH
HRPILMHDYDSTPM

Show Domain Info by CDD

Show Secondary Structure by PSIPRED

    	# PSIPRED HFORMAT (PSIPRED V3.2)

Conf: 987787500001022222124799988999999763323212469987678877883204
Pred: CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
  AA: MTTSGVPFGMTLRPTRSRLSRRTPYSRDRLPPFETETRATILEDHPLLPECNTLTMHNVS
              10        20        30        40        50        60


Conf: 761888653200000011368556797999986215543211432210112001198448
Pred: EEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCEECCCCEE
  AA: YVRGLPCSVGFTLIQEWVVPWDMVLTREELVILRKCMHVCLCCANIDIMTSMMIHGYESW
              70        80        90       100       110       120


Conf: 998307998840132005899999999851121022002346675058996169978588
Pred: EEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEEE
  AA: ALHCHCSSPGSLQCIAGGQVLASWFRMVVDGAMFNQRFIWYREVVNYNMPKEVMFMSSVF
             130       140       150       160       170       180


Conf: 828689999984124222312335776213551324839999718889962466988999
Pred: ECCEEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHH
  AA: MRGRHLIYLRLWYDGHVGSVVPAMSFGYSALHCGILNNIVVLCCSYCADLSEIRVRCCAR
             190       200       210       220       230       240


Conf: 999999999999840425566520568999999999996178820156889999
Pred: HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
  AA: RTRRLMLRAVRIIAEETTAMLYSCRTERRRQQFIRALLQHHRPILMHDYDSTPM
             250       260       270       280       290

Show Conservation Score by AL2CO

1     M      -1.000    *
2     T      -1.000    *
3     T      -1.000    *
4     S      -1.000    *
5     G      -1.000    *
6     V      -1.000    *
7     P      -1.000    *
8     F      -1.000    *
9     G      -1.000    *
10    M      -1.000    *
11    T      -1.000    *
12    L      -1.000    *
13    R      -1.000    *
14    P      -1.000    *
15    T      -1.000    *
16    R      -1.000    *
17    S      -1.000    *
18    R      -1.000    *
19    L      -1.000    *
20    S      -1.000    *
21    R      -1.000    *
22    R      -1.000    *
23    T      -1.000    *
24    P      -1.000    *
25    Y      -1.000    *
26    S      -1.000    *
27    R      -1.000    *
28    D      -1.000    *
29    R      -1.000    *
30    L      -1.000    *
31    P      -1.000    *
32    P      -1.000    *
33    F      -1.000    *
34    E      -1.000    *
35    T      -1.000    *
36    E      -1.000    *
37    T      -1.000    *
38    R      -1.000    *
39    A      -1.000    *
40    T      -1.000    *
41    I      -1.000    *
42    L      -1.000    *
43    E      -1.000    *
44    D      -1.000    *
45    H      -1.000    *
46    P      -1.000    *
47    L      -1.000    *
48    L      -1.000    *
49    P       0.210
50    E       1.165
51    C       2.729
52    N      -0.567
53    T      -0.337
54    L      -0.903
55    T      -0.395
56    M      -0.542
57    H       2.160
58    N      -1.134
59    V       0.010
60    S      -0.427
61    Y      -0.758
62    V       1.201
63    R      -0.062
64    G       0.136
65    L      -0.598
66    P      -0.304
67    C      -0.126
68    S       0.216
69    V       0.097
70    G      -0.392
71    F       1.973
72    T       0.120
73    L      -0.186
74    I      -0.528
75    Q      -0.357
76    E       1.405
77    W       0.091
78    V       1.982
79    V       0.994
80    P       1.034
81    W       1.737
82    D      -0.654
83    M      -1.204
84    V       0.415
85    L       1.565
86    T      -0.444
87    R      -0.846
88    E      -0.619
89    E       1.318
90    L      -1.078
91    V      -0.575
92    I       0.338
93    L       0.645
94    R      -0.284
95    K      -1.500
96    C      -0.575
97    M      -0.339
98    H      -0.590
99    V      -0.547
100   C       0.602
101   L      -0.309
102   C       0.030
103   C      -0.223
104   A      -0.508
105   N      -1.036
106   I       0.028
107   D      -1.026
108   I      -0.618
109   M      -1.201
110   T      -1.086
111   S      -1.085
112   M      -0.913
113   M      -1.243
114   I      -0.006
115   H      -0.519
116   G       0.079
117   Y      -1.076
118   E       0.014
119   S      -0.821
120   W       1.975
121   A      -1.303
122   L       0.757
123   H       1.210
124   C       2.729
125   H       2.192
126   C       2.030
127   S      -1.036
128   S      -0.276
129   P      -0.050
130   G      -0.507
131   S       1.578
132   L       2.729
133   Q       0.606
134   C       1.329
135   I      -0.119
136   A       1.325
137   G       0.611
138   G      -0.297
139   Q      -0.910
140   V       0.186
141   L       0.009
142   A      -0.732
143   S      -1.420
144   W       0.061
145   F       0.325
146   R      -0.158
147   M      -0.415
148   V      -0.450
149   V       0.991
150   D      -1.350
151   G       2.197
152   A      -0.125
153   M      -1.218
154   F       0.090
155   N       2.004
156   Q      -0.790
157   R      -0.732
158   F      -0.005
159   I      -0.120
160   W      -0.107
161   Y       1.345
162   R       2.202
163   E      -0.222
164   V      -0.902
165   V       0.674
166   N       2.004
167   Y      -1.144
168   N      -1.129
169   M      -0.579
170   P      -0.499
171   K      -0.613
172   E       0.053
173   V       0.377
174   M      -0.801
175   F       1.931
176   M       0.485
177   S       1.712
178   S       2.729
179   V       0.144
180   F      -0.107
181   M      -0.313
182   R       0.387
183   G       0.238
184   R      -0.448
185   H       2.729
186   L       1.154
187   I       0.977
188   Y       1.225
189   L       0.312
190   R       0.214
191   L       0.134
192   W      -1.394
193   Y      -0.247
194   D      -0.403
195   G      -1.152
196   H      -0.656
197   V      -0.345
198   G      -1.306
199   S      -1.146
200   V      -0.506
201   V      -0.549
202   P      -0.502
203   A      -1.230
204   M      -0.421
205   S      -0.478
206   F      -0.311
207   G       0.657
208   Y      -0.932
209   S      -0.217
210   A      -0.543
211   L      -0.478
212   H      -0.974
213   C      -0.906
214   G       1.422
215   I      -1.150
216   L      -0.367
217   N      -0.058
218   N      -0.759
219   I      -0.395
220   V       0.730
221   V       1.635
222   L       0.911
223   C      -0.557
224   C       2.729
225   S      -0.813
226   Y      -0.366
227   C       2.729
228   A      -0.482
229   D      -0.577
230   L      -0.311
231   S      -0.438
232   E      -0.144
233   I      -0.880
234   R      -0.179
235   V      -0.279
236   R      -0.235
237   C      -0.479
238   C       2.729
239   A       1.347
240   R      -0.496
241   R       1.193
242   T       0.280
243   R       1.074
244   R      -0.857
245   L      -0.288
246   M       0.604
247   L      -0.737
248   R      -0.327
249   A      -0.239
250   V      -0.504
251   R      -0.958
252   I      -0.421
253   I       0.155
254   A      -0.995
255   E      -0.545
256   E      -1.374
257   T      -0.607
258   T      -0.782
259   A      -1.259
260   M      -0.894
261   L      -0.314
262   Y      -1.330
263   S      -0.481
264   C       0.497
265   R      -0.508
266   T      -0.963
267   E       0.932
268   R      -0.436
269   R      -0.993
270   R       1.738
271   Q       1.055
272   Q      -0.363
273   F      -0.826
274   I       0.782
275   R      -0.751
276   A      -0.669
277   L      -0.158
278   L      -0.368
279   Q      -1.111
280   H      -0.212
281   H      -0.605
282   R      -0.649
283   P       0.140
284   I      -0.184
285   L      -0.190
286   M      -0.009
287   H      -0.653
288   D      -0.614
289   Y       1.854
290   D       0.812
291   S      -1.000    *
292   T      -1.000    *
293   P      -1.000    *
294   M      -1.000    *
* gap fraction no less than  0.50; conservation set to M-S
  M: mean;  S: standard deviation

al2co - The parameters are:

Input alignment file - 17.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation -  0.50

        10         20         30         40         50         60 MTTSGVPFGM TLRPTRSRLS RRTPYSRDRL PPFETETRAT ILEDHPLLPE CNTLTMHNVS 
        70         80         90        100        110        120 
YVRGLPCSVG FTLIQEWVVP WDMVLTREEL VILRKCMHVC LCCANIDIMT SMMIHGYESW 
       130        140        150        160        170        180 ALHCHCSSPG SLQCIAGGQV LASWFRMVVD GAMFNQRFIW YREVVNYNMP KEVMFMSSVF 
       190        200        210        220        230        240 MRGRHLIYLR LWYDGHVGSV VPAMSFGYSA LHCGILNNIV VLCCSYCADL SEIRVRCCAR 
       250        260        270        280        290            RTRRLMLRAV RIIAEETTAM LYSCRTERRR QQFIRALLQH HRPILMHDYD STPM

Not Available

E4-34kD and E1B-55kD promote the export of adenovirus mRNA. Dobbelstein et al. showed that the complex of the two proteins shuttles between the nucleus and the cytoplasm. The shuttling occurs only when the two proteins form a complex. E4-34kD contains an NES signal (83-92), as well as a nuclear retention signal (234-251). The nuclear retnetion signal is masked when E1B forms a complex.

[1]. "Nuclear export of the E1B 55-kDa and E4 34-kDa adenoviral oncoproteins mediated by a rev-like signal sequence"
Dobbelstein, M., Roth, J., Kimberly, W.T., Levine, A.J., Shenk, T. (1997) EMBO J, 16:4276-4284 PubMed

Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus. Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.

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