Bovine herpesvirus infected cell protein 27
UniProt
Show FASTA Format
>gi|82048083|sp|Q01354|Q01354_9ALPH BICP27
MADPEIATLSTASESDDLSLFGSDREEDDEAPSLAPALRSVVGQVRKRKLEGAEDEPMPAEPPGEGAASG
DGGPAEAPPARRARVRPRRPRRRPRRRQPAGEQRSRGPAAKREAALATSSHGGGGAAARSIGSSLRLARS
LAEAAQRATAERVTAVFAGARLDLMRPVQNGGFRAAGVSPWAAVLDFGAEQFVPEGRRVTWETLMFHGRD
LYRMFEVRPHAAQAARALRDLVLRSANLVDALASADECLTWCKFIATKNLRLRTKDPIVATAGAVLENLR
LKLAPFLRCYLRGRGLPSLEELCAARRLSLATCPASYMFVMLARLSRAVRSGAECVPLLEVTVGDAPFEE
YIPGTCVAGLIDALDTHKQACDSMTCKLVANFTLVPVYMHGKYFYCNEIF
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 987321013578877875431378877899999851113210000015589999999999
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC
AA: MADPEIATLSTASESDDLSLFGSDREEDDEAPSLAPALRSVVGQVRKRKLEGAEDEPMPA
10 20 30 40 50 60
Conf: 999999999999999999863356899999889999999843323699502565430799
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
AA: EPPGEGAASGDGGPAEAPPARRARVRPRRPRRRPRRRQPAGEQRSRGPAAKREAALATSS
70 80 90 100 110 120
Conf: 999999888711579998439999879888987776644332204644688744689998
Pred: CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
AA: HGGGGAAARSIGSSLRLARSLAEAAQRATAERVTAVFAGARLDLMRPVQNGGFRAAGVSP
130 140 150 160 170 180
Conf: 412303568887412346797899973575666320472489999999999980264999
Pred: CHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHH
AA: WAAVLDFGAEQFVPEGRRVTWETLMFHGRDLYRMFEVRPHAAQAARALRDLVLRSANLVD
190 200 210 220 230 240
Conf: 997305669999999870887888980552179999999860043403032689999989
Pred: HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHH
AA: ALASADECLTWCKFIATKNLRLRTKDPIVATAGAVLENLRLKLAPFLRCYLRGRGLPSLE
250 260 270 280 290 300
Conf: 899631034544611679999999999973288512353455699776644570345538
Pred: HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AA: ELCAARRLSLATCPASYMFVMLARLSRAVRSGAECVPLLEVTVGDAPFEEYIPGTCVAGL
310 320 330 340 350 360
Conf: 9999997751474332325500124330101123315689
Pred: HHHHHHHHHHCCCCCCCEEECCCCCCCEEECCEEECCCCC
AA: IDALDTHKQACDSMTCKLVANFTLVPVYMHGKYFYCNEIF
370 380 390 400
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 D -1.000 *
4 P -1.000 *
5 E -1.000 *
6 I -1.000 *
7 A -1.000 *
8 T -1.000 *
9 L -1.000 *
10 S -1.000 *
11 T -1.000 *
12 A -1.000 *
13 S -1.000 *
14 E -1.000 *
15 S -1.000 *
16 D -1.000 *
17 D -1.000 *
18 L -1.000 *
19 S -1.000 *
20 L -1.000 *
21 F -1.000 *
22 G -1.000 *
23 S -1.000 *
24 D -1.000 *
25 R -1.000 *
26 E -1.000 *
27 E -1.000 *
28 D -1.000 *
29 D -1.000 *
30 E -1.000 *
31 A -1.000 *
32 P -1.000 *
33 S -1.000 *
34 L -1.000 *
35 A -1.000 *
36 P -1.000 *
37 A -1.000 *
38 L -1.000 *
39 R -1.000 *
40 S -1.000 *
41 V -1.000 *
42 V -1.000 *
43 G -1.000 *
44 Q -1.000 *
45 V -1.000 *
46 R -1.000 *
47 K -1.000 *
48 R -1.000 *
49 K -1.000 *
50 L -1.000 *
51 E -1.000 *
52 G -1.000 *
53 A -1.000 *
54 E -1.000 *
55 D -1.000 *
56 E -1.000 *
57 P -1.000 *
58 M -1.000 *
59 P -1.000 *
60 A -1.000 *
61 E -1.000 *
62 P -1.000 *
63 P -1.000 *
64 G -1.000 *
65 E -1.000 *
66 G -1.000 *
67 A -1.000 *
68 A -1.000 *
69 S -1.000 *
70 G -1.000 *
71 D -1.000 *
72 G -1.000 *
73 G -1.000 *
74 P -1.000 *
75 A -1.000 *
76 E -1.000 *
77 A -1.000 *
78 P -1.000 *
79 P -1.000 *
80 A -1.000 *
81 R -1.000 *
82 R -0.707
83 A -0.446
84 R 1.515
85 V -1.120
86 R -0.588
87 P -1.259
88 R 0.017
89 R -1.121
90 P -0.204
91 R -0.024
92 R -1.095
93 R 0.206
94 P -1.669
95 R -0.817
96 R -0.407
97 R -0.783
98 Q -1.398
99 P -0.335
100 A -0.729
101 G -1.183
102 E -1.083
103 Q -0.511
104 R -0.432
105 S -0.687
106 R -0.409
107 G -1.407
108 P -0.689
109 A -0.823
110 A -1.042
111 K -1.147
112 R -0.904
113 E -0.998
114 A -0.995
115 A -0.774
116 L -1.224
117 A -1.349
118 T -1.023
119 S -0.180
120 S -1.360
121 H -1.073
122 G -1.065
123 G -0.633
124 G -0.519
125 G -0.617
126 A -0.649
127 A -0.740
128 A -1.018
129 R -0.547
130 S -0.522
131 I -0.945
132 G -0.579
133 S -1.052
134 S -1.032
135 L -0.579
136 R 0.107
137 L -0.329
138 A -1.392
139 R -0.485
140 S -0.707
141 L -1.051
142 A -0.516
143 E -0.674
144 A -0.401
145 A -0.983
146 Q -0.784
147 R -0.169
148 A -0.657
149 T -1.078
150 A -0.843
151 E -0.083
152 R 0.822
153 V -0.316
154 T -0.771
155 A -0.507
156 V -0.655
157 F 0.625
158 A -1.198
159 G -0.501
160 A -0.860
161 R -0.594
162 L -1.386
163 D -0.862
164 L 0.127
165 M -1.441
166 R -1.214
167 P -0.467
168 V 0.297
169 Q -1.190
170 N -0.648
171 G -1.188
172 G -0.313
173 F 0.585
174 R -0.355
175 A -0.122
176 A -0.174
177 G -0.891
178 V -0.617
179 S -0.273
180 P 0.067
181 W 0.541
182 A 0.107
183 A 0.098
184 V -0.007
185 L 1.009
186 D -0.676
187 F -0.161
188 G -0.153
189 A -1.150
190 E -0.678
191 Q -1.183
192 F -0.281
193 V -0.580
194 P -0.005
195 E -0.531
196 G -0.044
197 R -0.295
198 R -0.222
199 V 0.222
200 T 1.190
201 W 2.131
202 E -0.632
203 T -0.350
204 L 1.350
205 M -0.147
206 F -1.497
207 H -0.117
208 G 1.357
209 R -0.273
210 D -0.711
211 L 2.840
212 Y 0.569
213 R 0.074
214 M 0.300
215 F 1.998
216 E -0.262
217 V -0.613
218 R -0.325
219 P -0.344
220 H -0.979
221 A -0.305
222 A -0.018
223 Q -0.874
224 A -0.615
225 A 0.867
226 R 0.002
227 A -0.068
228 L 0.058
229 R 2.840
230 D -0.073
231 L -0.825
232 V 0.480
233 L 1.230
234 R 0.480
235 S 0.521
236 A 1.137
237 N 0.571
238 L 1.703
239 V -0.610
240 D 0.382
241 A 1.085
242 L 1.287
243 A 0.728
244 S 0.901
245 A 0.801
246 D 1.658
247 E 2.840
248 C 0.111
249 L 1.215
250 T 0.275
251 W 2.840
252 C 0.014
253 K 1.201
254 F 0.002
255 I -0.035
256 A -0.540
257 T -1.063
258 K -0.365
259 N -0.337
260 L 1.431
261 R 0.460
262 L 1.225
263 R -1.004
264 T 0.589
265 K -0.685
266 D 1.953
267 P 1.854
268 I 2.127
269 V 0.449
270 A -0.198
271 T 0.763
272 A 0.369
273 G -0.979
274 A 1.178
275 V 1.184
276 L 0.711
277 E 0.300
278 N 0.224
279 L 1.500
280 R -0.382
281 L 0.646
282 K 1.115
283 L 2.131
284 A 0.224
285 P 0.995
286 F 0.474
287 L 0.087
288 R -0.370
289 C 2.840
290 Y -0.109
291 L 0.929
292 R -0.907
293 G -0.846
294 R -0.054
295 G 0.334
296 L -0.758
297 P -0.413
298 S -0.289
299 L 0.643
300 E -0.471
301 E 1.015
302 L 0.292
303 C 0.702
304 A -0.331
305 A -0.228
306 R -0.339
307 R 0.498
308 L 0.082
309 S -0.498
310 L 0.813
311 A 0.962
312 T -0.393
313 C 0.603
314 P -0.452
315 A 0.179
316 S 1.168
317 Y 0.297
318 M -0.609
319 F 1.190
320 V 0.695
321 M -0.378
322 L 0.511
323 A 0.356
324 R 0.989
325 L 0.608
326 S 0.090
327 R -0.245
328 A -0.653
329 V 0.291
330 R -1.062
331 S -0.259
332 G 0.071
333 A -0.887
334 E -0.896
335 C -1.201
336 V 0.250
337 P -1.005
338 L -0.744
339 L -1.379
340 E -0.839
341 V -0.062
342 T -0.609
343 V -0.878
344 G -0.701
345 D -0.890
346 A -0.626
347 P -1.094
348 F 0.065
349 E -1.061
350 E -0.588
351 Y 2.840
352 I -0.347
353 P 2.840
354 G 2.840
355 T -0.082
356 C 1.500
357 V -0.282
358 A 0.024
359 G 0.753
360 L -0.072
361 I -0.002
362 D -0.155
363 A -0.142
364 L 0.934
365 D 0.152
366 T 0.189
367 H 2.840
368 K -0.634
369 Q -0.365
370 A -0.874
371 C 2.840
372 D -0.380
373 S -0.510
374 M -1.228
375 T -0.607
376 C 2.840
377 K -0.835
378 L 0.759
379 V 0.502
380 A -0.139
381 N -0.253
382 F -0.657
383 T -0.053
384 L 0.145
385 V -0.095
386 P 1.036
387 V -0.636
388 Y 0.915
389 M -0.645
390 H 1.325
391 G 2.840
392 K 1.816
393 Y 1.749
394 F 2.071
395 Y 0.406
396 C 2.840
397 N 1.168
398 E -0.600
399 I 0.240
400 F 2.840
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 176.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MADPEIATLS TASESDDLSL FGSDREEDDE APSLAPALRS VVGQVRKRKL EGAEDEPMPA
70 80 90 100 110 120
EPPGEGAASG DGGPAEAPPA RRARVRPRRP RRRPRRRQPA GEQRSRGPAA KREAALATSS
130 140 150 160 170 180
HGGGGAAARS IGSSLRLARS LAEAAQRATA ERVTAVFAGA RLDLMRPVQN GGFRAAGVSP
190 200 210 220 230 240
WAAVLDFGAE QFVPEGRRVT WETLMFHGRD LYRMFEVRPH AAQAARALRD LVLRSANLVD
250 260 270 280 290 300
ALASADECLT WCKFIATKNL RLRTKDPIVA TAGAVLENLR LKLAPFLRCY LRGRGLPSLE
310 320 330 340 350 360
ELCAARRLSL ATCPASYMFV MLARLSRAVR SGAECVPLLE VTVGDAPFEE YIPGTCVAGL
370 380 390 400
IDALDTHKQA CDSMTCKLVA NFTLVPVYMH GKYFYCNEIF
Bovine herpesvirus type-1 (BHV-1)infected cell protein 27 (BICP27) is a nucleolar protein and has both a nuclear localizaiton signal as well as a nucleolar localization signals. An early protein with postranscriptional roles, BICP27 has been shown to partake in continuous nucleo-cytoplasmic shuttling. The shuttling activities of some viral proteins depend on virus-encoded cofacts, but BICP27 shuttling occurs in the absence of a viral infection. All single-leucine mutations lost shuttling activity, therefore indicating that each one is critical for export.
[1]. "Characterization of the nuclear import and export mechanisms of bovine herpesvirus-1 infected cell protein 27."
Ding Q, Guo H, Lin F, Pan W, Ye B, Zheng AC. (2010)
Virus Res,
149:95-103
PubMed
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by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.