Show FASTA Format
>gi|3914060|sp|O43196.1|MSH5_HUMAN RecName: Full=MutS protein homolog 5; Short=hMSH5
MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSD
STIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQEHREPKRPEIIFLPSVDFGL
EISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDYNVSVPILG
FKKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHD
LGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDAC
RSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALL
GDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQN
GRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDA
IFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC
PHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVAR
GKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
Show Domain Info by CDD
Show Secondary Structure by PSIPRED
# PSIPRED HFORMAT (PSIPRED V3.2)
Conf: 988899999998999999998999999999999987401100011248489999981996
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEECCCE
AA: MASLGANPRRTPQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGY
10 20 30 40 50 60
Conf: 899999855873999104799873789999984139988996699872699984100343
Pred: EEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCC
AA: LGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQ
70 80 90 100 110 120
Conf: 687999954884889998968689999669988878300000121000233336974689
Pred: CCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
AA: EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV
130 140 150 160 170 180
Conf: 988599999842126632367877666320388645794877186877510121477886
Pred: HHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHHHHHCCCCCCCCC
AA: RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPS
190 200 210 220 230 240
Conf: 222358976654086455214893589999988521159968996499999996179999
Pred: CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCH
AA: VYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNL
250 260 270 280 290 300
Conf: 999999994079999789999983399996779999999999799999994097140899
Pred: HHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AA: DMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLF
310 320 330 340 350 360
Conf: 999986203299999976221347764235792746799953799998872980899999
Pred: HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHHH
AA: RDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEV
370 380 390 400 410 420
Conf: 999984449999930499965515999972899999888766677799853374222568
Pred: HHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCC
AA: ARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRS
430 440 450 460 470 480
Conf: 022437854159577799999999999999999879999999999999978989999999
Pred: HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AA: ARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAAR
490 500 510 520 530 540
Conf: 879999730279980687268863022156995458754479999469982799789628
Pred: HCCCCCCEECCCCCEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHH
AA: DYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSI
550 560 570 580 590 600
Conf: 899799999985307744778771145450302566564333664446776699999997
Pred: HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
AA: YLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVN
610 620 630 640 650 660
Conf: 055762466402598998132499999999999832999980998145033310699999
Pred: CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCCCCC
AA: NATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQ
670 680 690 700 710 720
Conf: 997236999999839918997511348888508999999669998999999999999975
Pred: CCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
AA: GPLVQYLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS
730 740 750 760 770 780
Conf: 999720002555877899999999998448999974076544364322210039
Pred: CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
AA: GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL
790 800 810 820 830
Show Conservation Score by AL2CO
1 M -1.000 *
2 A -1.000 *
3 S -1.000 *
4 L -1.000 *
5 G -1.000 *
6 A -1.000 *
7 N -1.000 *
8 P -1.000 *
9 R -1.000 *
10 R -1.000 *
11 T -1.000 *
12 P -1.000 *
13 Q -1.000 *
14 G -1.000 *
15 P -1.000 *
16 R -1.000 *
17 P -1.000 *
18 G -1.000 *
19 A -1.000 *
20 A -1.000 *
21 S -1.000 *
22 S -1.000 *
23 G -1.000 *
24 F -1.000 *
25 P -1.000 *
26 S -1.000 *
27 P -1.000 *
28 A -1.000 *
29 P -1.000 *
30 V -1.000 *
31 P -1.000 *
32 G -1.000 *
33 P -1.000 *
34 R -1.000 *
35 E -1.000 *
36 A -1.000 *
37 E -1.000 *
38 E -1.000 *
39 E -1.000 *
40 E -1.000 *
41 V -1.000 *
42 E -1.000 *
43 E -1.000 *
44 E -0.054
45 E -0.310
46 E -0.687
47 L -0.735
48 A -0.531
49 E -0.360
50 I 0.065
51 H -0.162
52 L 0.118
53 C 0.313
54 V -0.083
55 L -0.794
56 W -1.128
57 N -1.094
58 S -0.627
59 G -0.789
60 Y -1.038
61 L -0.338
62 G 1.587
63 I 0.130
64 A 0.675
65 Y -0.298
66 Y -0.209
67 D 1.810
68 T -0.122
69 S -0.181
70 D 0.234
71 S 0.070
72 T -0.306
73 I 0.281
74 H -0.983
75 F -0.252
76 M -0.329
77 P -0.425
78 D -0.763
79 A -1.065
80 P -1.082
81 D -0.817
82 H -0.964
83 E -0.936
84 S -1.058
85 L -1.057
86 K -0.792
87 L -0.938
88 L -0.265
89 Q -1.049
90 R -0.742
91 V -0.194
92 L 0.057
93 D -0.969
94 E -0.325
95 I -0.191
96 N -0.685
97 P 2.125
98 Q -0.337
99 S 0.409
100 V 0.599
101 V 0.924
102 T -0.291
103 S -0.550
104 A -0.699
105 K -0.860
106 Q -1.098
107 D -0.763
108 E -0.819
109 N -1.076
110 M -0.906
111 T -1.046
112 R -0.932
113 F -1.123
114 L -0.649
115 G -0.876
116 K -0.936
117 L -1.050
118 A -1.139
119 S -1.074
120 Q -0.954
121 E -1.153
122 H -1.047
123 R -1.132
124 E -1.084
125 P -1.027
126 K -1.140
127 R -1.011
128 P -1.048
129 E -1.135
130 I -0.886
131 I -0.917
132 F -1.116
133 L -0.824
134 P -0.546
135 S -1.012
136 V -1.101
137 D -1.062
138 F -0.048
139 G -0.785
140 L -0.991
141 E -0.853
142 I -1.016
143 S -0.450
144 K -1.039
145 Q -0.866
146 R -0.783
147 L -0.400
148 L -0.680
149 S -1.000 *
150 G -1.000 *
151 N -1.000 *
152 Y -1.000 *
153 S -1.000 *
154 F -1.000 *
155 I -1.000 *
156 P -1.000 *
157 D -1.000 *
158 A -1.000 *
159 M -1.000 *
160 T -1.000 *
161 A -0.902
162 T -0.843
163 E -0.415
164 K -0.458
165 I -0.859
166 L -1.104
167 F -0.931
168 L -0.239
169 S -0.716
170 S -0.508
171 I -0.477
172 I -0.431
173 P -0.773
174 F -0.937
175 D -0.480
176 C -0.950
177 L -0.808
178 L -1.113
179 T -0.358
180 V -0.230
181 R -0.879
182 A 0.741
183 L 0.136
184 G 0.494
185 G -0.338
186 L 0.439
187 L 0.586
188 K -1.022
189 F 0.924
190 L 0.672
191 G -0.975
192 R -0.674
193 R -0.353
194 R 0.484
195 I -1.000 *
196 G -1.000 *
197 V -1.000 *
198 E -1.000 *
199 L -1.000 *
200 E -1.000 *
201 D -1.000 *
202 Y -0.838
203 N -0.741
204 V -0.940
205 S -0.903
206 V -0.885
207 P -0.662
208 I 0.265
209 L -0.770
210 G -0.852
211 F 0.078
212 K -0.939
213 K -0.936
214 F -0.403
215 M -1.015
216 L -0.863
217 T -0.688
218 H -0.537
219 L -0.717
220 V 0.279
221 N -1.126
222 I 0.879
223 D 0.854
224 Q -1.067
225 D -0.924
226 T 0.342
227 Y -0.575
228 S -0.393
229 V 0.156
230 L 1.964
231 Q 0.750
232 I 0.755
233 F -0.047
234 K -0.445
235 S -0.366
236 E -0.807
237 S -0.567
238 H -0.236
239 P -1.000 *
240 S -1.000 *
241 V -1.000 *
242 Y -1.000 *
243 K -1.000 *
244 V -1.000 *
245 A -1.000 *
246 S -1.000 *
247 G -1.000 *
248 L -0.845
249 K -0.699
250 E -0.562
251 G -0.372
252 L -0.748
253 S 0.676
254 L 1.201
255 F -0.100
256 G -0.375
257 I 0.088
258 L 0.738
259 N 1.469
260 R -0.614
261 C 1.124
262 H -0.791
263 C 1.287
264 K 0.490
265 W -0.108
266 G 2.482
267 E -0.063
268 K 0.758
269 L -0.535
270 L 1.212
271 R 0.543
272 L -0.732
273 W -0.100
274 F 0.390
275 T -0.812
276 R -0.627
277 P 2.884
278 T 0.549
279 H -0.385
280 D -0.573
281 L -0.804
282 G -0.957
283 E -0.856
284 L 1.261
285 S -0.934
286 S -0.776
287 R 2.884
288 L 0.761
289 D -0.391
290 V -0.378
291 I 1.313
292 Q -0.281
293 F -0.791
294 F 0.770
295 L -0.570
296 L -1.000 *
297 P -0.839
298 Q -0.700
299 N -0.678
300 L -1.002
301 D -0.993
302 M -0.944
303 A -0.667
304 Q -1.033
305 M -0.911
306 L 0.289
307 H -1.018
308 R -0.731
309 L -1.002
310 L 0.681
311 G -0.737
312 H -0.883
313 I 0.279
314 K -0.425
315 N 1.511
316 V 0.690
317 P 0.763
318 L 0.109
319 I 0.931
320 L -0.308
321 K -0.334
322 R 1.290
323 M 0.004
324 K -0.596
325 L -0.601
326 S -0.597
327 H -0.646
328 T -0.179
329 K -0.096
330 V 0.113
331 S 0.345
332 D 1.202
333 W -0.013
334 Q -0.795
335 V -0.583
336 L 0.687
337 Y -0.618
338 K -1.026
339 T 0.489
340 V 0.206
341 Y -1.001
342 S -0.948
343 A 0.169
344 L -0.820
345 G -0.926
346 L 0.755
347 R -0.840
348 D -1.017
349 A -0.814
350 C -0.173
351 R -0.675
352 S -0.851
353 L -0.843
354 P -0.919
355 Q -0.706
356 S -0.946
357 I -1.063
358 Q -0.841
359 L -0.910
360 F -0.652
361 R -1.004
362 D -0.773
363 I -0.905
364 A -1.073
365 Q -0.920
366 E -0.828
367 F -0.576
368 S -1.000 *
369 D -0.500
370 D -0.955
371 L -0.565
372 H -1.027
373 H -0.972
374 I -0.091
375 A -1.065
376 S -0.860
377 L -0.559
378 I -0.176
379 G -0.742
380 K -0.732
381 V -0.382
382 V -0.172
383 D -0.958
384 F -0.547
385 E -0.015
386 G -0.211
387 S -0.632
388 L -0.649
389 A -0.433
390 E -0.739
391 N -0.349
392 R -0.027
393 F -0.216
394 T -0.400
395 V 0.773
396 L -0.096
397 P -0.812
398 N 0.320
399 I 0.302
400 D 0.140
401 P -0.670
402 E -0.686
403 I 0.617
404 D 1.836
405 E -0.740
406 K -0.068
407 K -0.319
408 R -0.900
409 R -0.592
410 L -0.677
411 M -0.948
412 G -0.239
413 L 0.291
414 P -0.596
415 S -0.395
416 F -0.051
417 L 0.905
418 T -0.673
419 E -0.380
420 V 0.533
421 A 0.161
422 R -0.891
423 K -0.715
424 E 0.732
425 L -0.244
426 E -0.068
427 N -0.429
428 L -1.000 *
429 D -1.000 *
430 S -0.298
431 R -0.472
432 I 0.535
433 P -0.455
434 S -0.471
435 C 0.722
436 S 0.276
437 V 1.152
438 I -0.303
439 Y 1.383
440 I 0.396
441 P 0.035
442 L -0.053
443 I 0.583
444 G 2.137
445 F 2.009
446 L 0.562
447 L 0.790
448 S -0.006
449 I 0.918
450 P 0.269
451 R 0.456
452 L -0.454
453 P -0.526
454 S -0.711
455 M -0.745
456 V -0.815
457 E -0.398
458 A 0.103
459 S -0.716
460 D -0.333
461 F -0.304
462 E -0.609
463 I 0.179
464 N -0.430
465 G -0.357
466 L -1.000 *
467 D -1.000 *
468 F -1.000 *
469 M -0.784
470 F 0.057
471 L 0.020
472 S -0.207
473 E -0.173
474 E -0.368
475 K -0.231
476 L 0.595
477 H 1.129
478 Y 1.948
479 R -0.100
480 S 0.621
481 A -0.257
482 R 0.182
483 T 1.602
484 K 0.143
485 E -0.291
486 L -0.300
487 D 0.933
488 A -0.497
489 L -0.639
490 L 0.626
491 G 0.088
492 D 0.163
493 L 0.544
494 H -0.460
495 C -0.268
496 E 0.265
497 I -0.209
498 R -0.999
499 D -0.711
500 Q -0.270
501 E 2.475
502 T -0.874
503 L -0.587
504 L -0.158
505 M 0.455
506 Y -0.929
507 Q -0.464
508 L 0.778
509 Q -0.177
510 C -0.861
511 Q -1.003
512 V 0.362
513 L -0.851
514 A -0.819
515 R -0.616
516 A -0.388
517 A -0.934
518 V -0.945
519 L 0.719
520 T -0.454
521 R -0.860
522 V -0.399
523 L 0.162
524 D -0.859
525 L -0.886
526 A 0.396
527 S 1.048
528 R -1.012
529 L 0.450
530 D 2.884
531 V 0.270
532 L 0.228
533 L -0.703
534 A 0.434
535 L 1.091
536 A 0.615
537 S -1.016
538 A -0.414
539 A 1.492
540 R -0.968
541 D -0.802
542 Y -0.415
543 G -0.519
544 Y 1.778
545 S -0.394
546 R 0.187
547 P 2.884
548 R -0.791
549 Y 0.551
550 S -0.811
551 P -0.751
552 Q -0.540
553 V -0.785
554 L -1.070
555 G -0.864
556 V 0.880
557 R -0.862
558 I 1.104
559 Q -0.575
560 N -0.113
561 G 1.656
562 R 1.827
563 H 2.884
564 P 1.723
565 L 1.176
566 M 0.513
567 E 1.445
568 L -0.589
569 C -0.885
570 A -0.890
571 R -0.405
572 T -0.989
573 F 1.985
574 V 1.650
575 P -0.078
576 N 2.884
577 S 0.680
578 T -0.055
579 E -1.008
580 C 0.300
581 G -0.287
582 G -1.016
583 D -0.731
584 K -0.819
585 G -0.822
586 R -0.732
587 V -0.475
588 K -0.781
589 V 1.032
590 I 1.287
591 T 2.476
592 G 2.884
593 P 2.145
594 N 2.884
595 S 0.937
596 S 1.199
597 G 2.884
598 K 2.884
599 S 2.884
600 I 0.591
601 Y 0.631
602 L 1.196
603 K 1.700
604 Q 1.542
605 V 0.194
606 G 1.658
607 L 1.327
608 I 0.614
609 T 0.352
610 F 0.629
611 M 1.940
612 A 0.916
613 L 1.109
614 V 0.209
615 G 2.884
616 S 1.350
617 F 0.962
618 V 2.051
619 P 2.339
620 A 1.885
621 E -0.163
622 E -0.794
623 A 1.596
624 E -0.654
625 I 1.093
626 G 0.546
627 A -0.292
628 V 0.192
629 D 2.476
630 A 0.370
631 I 1.628
632 F 2.108
633 T 1.369
634 R 1.402
635 I 1.098
636 H 1.246
637 S 0.926
638 C -0.476
639 E 1.454
640 S 0.179
641 I 1.073
642 S 0.092
643 L -0.455
644 G 1.053
645 L 0.205
646 S 2.884
647 T 1.996
648 F 2.884
649 M 1.522
650 I 0.676
651 D 1.966
652 L 1.368
653 N -0.472
654 Q 1.957
655 V 0.192
656 A 0.991
657 K -0.656
658 A 1.149
659 V 1.165
660 N -0.180
661 N -0.287
662 A 0.230
663 T 1.018
664 A -0.657
665 Q 0.031
666 S 2.884
667 L 1.542
668 V 1.114
669 L 1.400
670 I 0.746
671 D 2.884
672 E 2.884
673 F 1.025
674 G 2.884
675 K 1.966
676 G 2.884
677 T 2.884
678 N 0.604
679 T 1.629
680 V 0.111
681 D 2.884
682 G 2.884
683 L 0.520
684 A 1.469
685 L 1.939
686 L 1.704
687 A -0.124
688 A 1.525
689 V 0.296
690 L 0.274
691 R 0.560
692 H 0.620
693 W 0.279
694 L -0.517
695 A -0.671
696 R -0.968
697 G -0.958
698 P -1.086
699 T -1.007
700 C -0.508
701 P 0.303
702 H 0.351
703 I 0.672
704 F 0.887
705 V 0.698
706 A 1.391
707 T 2.476
708 N 1.841
709 F 1.561
710 L 0.751
711 S 0.455
712 L 1.285
713 V -0.092
714 Q -0.414
715 L -0.067
716 Q -0.418
717 L -0.807
718 L -0.643
719 P -0.807
720 Q -0.563
721 G -0.546
722 P -0.502
723 L -0.774
724 V 0.808
725 Q -0.513
726 Y 0.895
727 L 0.184
728 T -0.083
729 M 0.691
730 E -0.170
731 T 0.403
732 C -0.722
733 E -0.338
734 D -1.068
735 G -0.445
736 N -0.078
737 D -0.210
738 L 1.216
739 V 0.291
740 F 2.474
741 F 0.894
742 Y 1.385
743 Q 0.437
744 V 1.378
745 C -0.568
746 E -0.219
747 G 2.884
748 V -0.533
749 A 0.505
750 K -0.375
751 A -0.531
752 S 2.444
753 H 0.774
754 A 2.018
755 S 0.463
756 H 0.138
757 T 0.889
758 A 1.400
759 A -0.451
760 Q 0.389
761 A 2.229
762 G 1.986
763 L 0.798
764 P 1.540
765 D -0.866
766 K -1.072
767 L 1.068
768 V 0.876
769 A -0.747
770 R 0.826
771 G 1.492
772 K -0.824
773 E -0.665
774 V 0.968
775 S 0.085
776 D -0.875
777 L -0.893
778 I 0.070
779 R -0.703
780 S -0.579
781 G -0.714
782 K -0.727
783 P -1.047
784 I -0.919
785 K -0.973
786 P -0.961
787 V -1.066
788 K -1.020
789 D -0.962
790 L -1.023
791 L -1.052
792 K -0.991
793 K -1.079
794 N -1.020
795 Q -0.961
796 M -1.014
797 E -0.832
798 N -1.106
799 C -1.132
800 Q -0.926
801 T -1.019
802 L -0.994
803 V -0.972
804 D -0.929
805 K -0.872
806 F -0.866
807 M -0.972
808 K -0.653
809 L -0.811
810 D -0.676
811 L -0.826
812 E -0.937
813 D -0.389
814 P -0.805
815 N -0.754
816 L -0.389
817 D 0.175
818 L 0.372
819 N -0.637
820 V -0.802
821 F 0.348
822 M 0.172
823 S -0.320
824 Q -0.558
825 E 0.152
826 V 0.120
827 L 0.627
828 P -0.445
829 A -0.695
830 A 0.812
831 T -0.852
832 S -0.176
833 I 1.164
834 L -1.000 *
* gap fraction no less than 0.50; conservation set to M-S
M: mean; S: standard deviation
al2co - The parameters are:
Input alignment file - 177.paln
Output conservation - STDOUT
Weighting scheme - independent-count based
Conservation calculation method - entropy-based
Window size - 1
Conservation normalized to zero mean and unity variance
Gap fraction to suppress calculation - 0.50
10 20 30 40 50 60
MASLGANPRR TPQGPRPGAA SSGFPSPAPV PGPREAEEEE VEEEEELAEI HLCVLWNSGY
70 80 90 100 110 120
LGIAYYDTSD STIHFMPDAP DHESLKLLQR VLDEINPQSV VTSAKQDENM TRFLGKLASQ
130 140 150 160 170 180
EHREPKRPEI IFLPSVDFGL EISKQRLLSG NYSFIPDAMT ATEKILFLSS IIPFDCLLTV
190 200 210 220 230 240
RALGGLLKFL GRRRIGVELE DYNVSVPILG FKKFMLTHLV NIDQDTYSVL QIFKSESHPS
250 260 270 280 290 300
VYKVASGLKE GLSLFGILNR CHCKWGEKLL RLWFTRPTHD LGELSSRLDV IQFFLLPQNL
310 320 330 340 350 360
DMAQMLHRLL GHIKNVPLIL KRMKLSHTKV SDWQVLYKTV YSALGLRDAC RSLPQSIQLF
370 380 390 400 410 420
RDIAQEFSDD LHHIASLIGK VVDFEGSLAE NRFTVLPNID PEIDEKKRRL MGLPSFLTEV
430 440 450 460 470 480
ARKELENLDS RIPSCSVIYI PLIGFLLSIP RLPSMVEASD FEINGLDFMF LSEEKLHYRS
490 500 510 520 530 540
ARTKELDALL GDLHCEIRDQ ETLLMYQLQC QVLARAAVLT RVLDLASRLD VLLALASAAR
550 560 570 580 590 600
DYGYSRPRYS PQVLGVRIQN GRHPLMELCA RTFVPNSTEC GGDKGRVKVI TGPNSSGKSI
610 620 630 640 650 660
YLKQVGLITF MALVGSFVPA EEAEIGAVDA IFTRIHSCES ISLGLSTFMI DLNQVAKAVN
670 680 690 700 710 720
NATAQSLVLI DEFGKGTNTV DGLALLAAVL RHWLARGPTC PHIFVATNFL SLVQLQLLPQ
730 740 750 760 770 780
GPLVQYLTME TCEDGNDLVF FYQVCEGVAK ASHASHTAAQ AGLPDKLVAR GKEVSDLIRS
790 800 810 820 830
GKPIKPVKDL LKKNQMENCQ TLVDKFMKLD LEDPNLDLNV FMSQEVLPAA TSIL
Mut-S homologous protein 5 (MSH5), in a heterodimer with MSH4, is essential for the processing and/or stabilization of meiotic DNA recombination intermediates. While hMSH4 exhibits a limited expression profile, hMSH5 is involved in various cellular processes and interacts with other proteins.
Although the putative carboxy-terminus NES of amino acids 802-811 was not itself tested for sufficiency, a mutant deletion of the four critical residues (Mutant 7) was inserted into Rev(1.4)-GFP control and exhibited limited export acitivity. Mutant 7 was also unable to interact with hMSH4, whereas mutagenesis of hMSH5 NLS did not affect interaction between hMSH4 and hMSH5. This further verified that the NES is located in the hMSH4-binding domain towards the carboxy-terminus of hMSH5. hMSH5 is found to be less stable and to have a shorter half-life in the nucleus due to degradation by nuclear proteosome 26S.
[1]. "hMSH5 is a nucleocytoplasmic shuttling protein whose stability depends on its subcellular localization."
Lahaye F, Lespinasse F, Staccini P, Palin L, Paquis-Flucklinger V, Santucci-Darmanin S. (2010)
Nucleic Acids Res,
38:3655-71
PubMed
Accurate identification of NESs is difficult because many sequences in the genome match the NES consensus.
Therefore, some published NESs may be mistakenly identified. Please help us improve the accuracy of NESdb
by providing either a positive or negative flag for the NES in this entry. Supporting comments are required to process the flag.